Search Results - Vezzi, Francesco

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  1. 1
    Feature-by-Feature – Evaluating De Novo Sequence Assembly

    Feature-by-Feature – Evaluating De Novo Sequence Assembly by Vezzi, Francesco, Narzisi, Giuseppe, Mishra, Bud

    Published 2012
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  2. 2
    GapFiller: a de novo assembly approach to fill the gap within paired reads

    GapFiller: a de novo assembly approach to fill the gap within paired reads by Nadalin, Francesca, Vezzi, Francesco, Policriti, Alberto

    Published 2012
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  3. 3
    Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons

    Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons by Vezzi, Francesco, Narzisi, Giuseppe, Mishra, Bud

    Published 2012
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  4. 4
    Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2

    Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2 by Prezza, Nicola, Vezzi, Francesco, Käller, Max, Policriti, Alberto

    Published 2016
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  5. 5
    GAM-NGS: genomic assemblies merger for next generation sequencing

    GAM-NGS: genomic assemblies merger for next generation sequencing by Vicedomini, Riccardo, Vezzi, Francesco, Scalabrin, Simone, Arvestad, Lars, Policriti, Alberto

    Published 2013
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  6. 6
    BESST - Efficient scaffolding of large fragmented assemblies

    BESST - Efficient scaffolding of large fragmented assemblies by Sahlin, Kristoffer, Vezzi, Francesco, Nystedt, Björn, Lundeberg, Joakim, Arvestad, Lars

    Published 2014
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  7. 7
    TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data

    TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data by Eisfeldt, Jesper, Vezzi, Francesco, Olason, Pall, Nilsson, Daniel, Lindstrand, Anna

    Published 2017
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  8. 8
    Recommendations on e-infrastructures for next-generation sequencing

    Recommendations on e-infrastructures for next-generation sequencing by Spjuth, Ola, Bongcam-Rudloff, Erik, Dahlberg, Johan, Dahlö, Martin, Kallio, Aleksi, Pireddu, Luca, Vezzi, Francesco, Korpelainen, Eija

    Published 2016
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  9. 9
    Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

    Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly by Celorio-Mancera, Maria de la Paz, Wheat, Christopher W., Huss, Mikael, Vezzi, Francesco, Neethiraj, Ramprasad, Reimegård, Johan, Nylin, Sören, Janz, Niklas

    Published 2016
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  10. 10
    Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women

    Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women by Engström, Karin, Wojdacz, Tomasz K., Marabita, Francesco, Ewels, Philip, Käller, Max, Vezzi, Francesco, Prezza, Nicola, Gruselius, Joel, Vahter, Marie, Broberg, Karin

    Published 2016
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  11. 11
    Comprehensive structural variation genome map of individuals carrying complex chromosomal rearrangements

    Comprehensive structural variation genome map of individuals carrying complex chromosomal rearrangements by Eisfeldt, Jesper, Pettersson, Maria, Vezzi, Francesco, Wincent, Josephine, Käller, Max, Gruselius, Joel, Nilsson, Daniel, Syk Lundberg, Elisabeth, Carvalho, Claudia M. B., Lindstrand, Anna

    Published 2019
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  12. 12
    Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

    Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools by Alexeyenko, Andrey, Nystedt, Björn, Vezzi, Francesco, Sherwood, Ellen, Ye, Rosa, Knudsen, Bjarne, Simonsen, Martin, Turner, Benjamin, de Jong, Pieter, Wu, Cheng-Cang, Lundeberg, Joakim

    Published 2014
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  13. 13
    High-resolution detection of chromosomal rearrangements in leukemias through mate pair whole genome sequencing

    High-resolution detection of chromosomal rearrangements in leukemias through mate pair whole genome sequencing by Tran, Anh Nhi, Taylan, Fulya, Zachariadis, Vasilios, Ivanov Öfverholm, Ingegerd, Lindstrand, Anna, Vezzi, Francesco, Lötstedt, Britta, Nordenskjöld, Magnus, Nordgren, Ann, Nilsson, Daniel, Barbany, Gisela

    Published 2018
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  14. 14
    De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data

    De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data by Ameur, Adam, Che, Huiwen, Martin, Marcel, Bunikis, Ignas, Dahlberg, Johan, Höijer, Ida, Häggqvist, Susana, Vezzi, Francesco, Nordlund, Jessica, Olason, Pall, Feuk, Lars, Gyllensten, Ulf

    Published 2018
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  15. 15
    Whole genome sequencing of cytogenetically balanced chromosome translocations identifies potentially pathological gene disruptions and highlights the importance of microhomology in the mechanism of formation

    Whole genome sequencing of cytogenetically balanced chromosome translocations identifies potentially pathological gene disruptions and highlights the importance of microhomology in... by Nilsson, Daniel, Pettersson, Maria, Gustavsson, Peter, Förster, Alisa, Hofmeister, Wolfgang, Wincent, Josephine, Zachariadis, Vasilios, Anderlid, Britt-Marie, Nordgren, Ann, Mäkitie, Outi, Wirta, Valtteri, Käller, Max, Vezzi, Francesco, Lupski, James R, Nordenskjöld, Magnus, Lundberg, Elisabeth Syk, Carvalho, Claudia M. B., Lindstrand, Anna

    Published 2016
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  16. 16
    Replicative and non-replicative mechanisms in the formation of clustered CNVs are indicated by whole genome characterization

    Replicative and non-replicative mechanisms in the formation of clustered CNVs are indicated by whole genome characterization by Nazaryan-Petersen, Lusine, Eisfeldt, Jesper, Pettersson, Maria, Lundin, Johanna, Nilsson, Daniel, Wincent, Josephine, Lieden, Agne, Lovmar, Lovisa, Ottosson, Jesper, Gacic, Jelena, Mäkitie, Outi, Nordgren, Ann, Vezzi, Francesco, Wirta, Valtteri, Käller, Max, Hjortshøj, Tina Duelund, Jespersgaard, Cathrine, Houssari, Rayan, Pignata, Laura, Bak, Mads, Tommerup, Niels, Lundberg, Elisabeth Syk, Tümer, Zeynep, Lindstrand, Anna

    Published 2018
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  17. 17
    SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

    SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population by Ameur, Adam, Dahlberg, Johan, Olason, Pall, Vezzi, Francesco, Karlsson, Robert, Martin, Marcel, Viklund, Johan, Kähäri, Andreas Kusalananda, Lundin, Pär, Che, Huiwen, Thutkawkorapin, Jessada, Eisfeldt, Jesper, Lampa, Samuel, Dahlberg, Mats, Hagberg, Jonas, Jareborg, Niclas, Liljedahl, Ulrika, Jonasson, Inger, Johansson, Åsa, Feuk, Lars, Lundeberg, Joakim, Syvänen, Ann-Christine, Lundin, Sverker, Nilsson, Daniel, Nystedt, Björn, Magnusson, Patrik KE, Gyllensten, Ulf

    Published 2017
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  18. 18
    Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

    Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species by Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F

    Published 2013
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