Bilaketaren emaitzak - Vergara, Ismael A

Large synteny blocks revealed between Caenorhabditis elegans and Caenorhabditis briggsae genomes using OrthoCluster nork Vergara, Ismael A, Chen, Nansheng

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CooVar: Co-occurring variant analyzer nork Vergara, Ismael A, Frech, Christian, Chen, Nansheng

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Using the Generic Synteny Browser (GBrowse_syn) nork McKay, Sheldon J., Vergara, Ismael A., Stajich, Jason E.

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StAR: a simple tool for the statistical comparison of ROC curves nork Vergara, Ismael A, Norambuena, Tomás, Ferrada, Evandro, Slater, Alex W, Melo, Francisco

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Transcriptome-Wide Detection of Differentially Expressed Coding and Non-Coding Transcripts and Their Clinical Significance in Prostate Cancer nork Erho, Nicholas, Buerki, Christine, Triche, Timothy J., Davicioni, Elai, Vergara, Ismael A.

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Identification of novel transcripts with differential dorso-ventral expression in Xenopus gastrula using serial analysis of gene expression nork Faunes, Fernando, Sánchez, Natalia, Castellanos, Javier, Vergara, Ismael A, Melo, Francisco, Larraín, Juan

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OrthoClusterDB: an online platform for synteny blocks nork Ng, Man-Ping, Vergara, Ismael A, Frech, Christian, Chen, Qingkang, Zeng, Xinghuo, Pei, Jian, Chen, Nansheng

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Adaptive Evolution of Geobacter sulfurreducens in Coculture with Pseudomonas aeruginosa nork Semenec, Lucie, Vergara, Ismael A., Laloo, Andrew E., Petrovski, Steve, Bond, Philip L., Franks, Ashley E.

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Quantitative Trait Locus (QTL) Mapping Reveals a Role for Unstudied Genes in Aspergillus Virulence nork Christians, Julian K., Cheema, Manjinder S., Vergara, Ismael A., Watt, Cortney A., Pinto, Linda J., Chen, Nansheng, Moore, Margo M.

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Polymorphic segmental duplication in the nematode Caenorhabditis elegans nork Vergara, Ismael A, Mah, Allan K, Huang, Jim C, Tarailo-Graovac, Maja, Johnsen, Robert C, Baillie, David L, Chen, Nansheng

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Genomic “Dark Matter” in Prostate Cancer: Exploring the Clinical Utility of ncRNA as Biomarkers nork Vergara, Ismael A., Erho, Nicholas, Triche, Timothy J., Ghadessi, Mercedeh, Crisan, Anamaria, Sierocinski, Thomas, Black, Peter C., Buerki, Christine, Davicioni, Elai

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RNA-seq analysis of the C. briggsae transcriptome nork Uyar, Bora, Chu, Jeffrey S.C., Vergara, Ismael A., Chua, Shu Yi, Jones, Martin R., Wong, Tammy, Baillie, David L., Chen, Nansheng

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Genome-wide variations in a natural isolate of the nematode Caenorhabditis elegans nork Vergara, Ismael A, Tarailo-Graovac, Maja, Frech, Christian, Wang, Jun, Qin, Zhaozhao, Zhang, Ting, She, Rong, Chu, Jeffrey SC, Wang, Ke, Chen, Nansheng

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The lncRNAs PCGEM1 and PRNCR1 are not implicated in castration resistant prostate cancer nork Prensner, John R., Sahu, Anirban, Iyer, Matthew K., Malik, Rohit, Chandler, Benjamin, Asangani, Irfan A., Poliakov, Anton, Vergara, Ismael A., Alshalalfa, Mohammed, Jenkins, Robert B., Davicioni, Elai, Feng, Felix Y., Chinnaiyan, Arul M.

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Discovery and Validation of Novel Expression Signature for Postcystectomy Recurrence in High-Risk Bladder Cancer nork Mitra, Anirban P., Lam, Lucia L., Ghadessi, Mercedeh, Erho, Nicholas, Vergara, Ismael A., Alshalalfa, Mohammed, Buerki, Christine, Haddad, Zaid, Sierocinski, Thomas, Triche, Timothy J., Skinner, Eila C., Davicioni, Elai, Daneshmand, Siamak, Black, Peter C.

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Metabolomic profiling identifies biochemical pathways associated with castrate resistant prostate cancer nork Kaushik, Akash K, Vareed, Shaiju K, Basu, Sumanta, Putluri, Vasanta, Putluri, Nagireddy, Panzitt, Katrin, Brennan, Christine A, Chinnaiyan, Arul M, Vergara, Ismael A., Erho, Nicholas, Weigel, Nancy L, Mitsiades, Nicholas, Shojaie, Ali, Palapattu, Ganesh, Michailidis, George, Sreekumar, Arun

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Tissue-resident memory T cells from a metastatic vaginal melanoma patient are tumor-responsive T cells and increase after anti-PD-1 treatment nork Pizzolla, Angela, Keam, Simon Paul, Vergara, Ismael A, Caramia, Franco, Thio, Niko, Wang, Minyu, Kocovski, Nikolce, Tantalo, Daniela, Jabbari, Jafar, Au-Yeung, George, Sandhu, Shahneen, Gyorki, David E, Weppler, Alison, Perdicchio, Maurizio, McArthur, Grant A, Papenfuss, Anthony T, Neeson, Paul Joseph

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Secreted protein, acidic and rich in cysteine-like 1 (SPARCL1) is down regulated in aggressive prostate cancers and is prognostic for poor clinical outcome nork Hurley, Paula J., Marchionni, Luigi, Simons, Brian W., Ross, Ashley E., Peskoe, Sarah B., Miller, Rebecca M., Erho, Nicholas, Vergara, Ismael A., Ghadessi, Mercedeh, Huang, Zhenhua, Gurel, Bora, Park, Ben Ho, Davicioni, Elai, Jenkins, Robert B., Platz, Elizabeth A., Berman, David M., Schaeffer, Edward M.

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Higher proportions of CD39+ tumor-resident cytotoxic T cells predict recurrence-free survival in patients with stage III melanoma treated with adjuvant immunotherapy nork Attrill, Grace Heloise, Owen, Carina N, Ahmed, Tasnia, Vergara, Ismael A, Colebatch, Andrew J, Conway, Jordan W, Nahar, Kazi J, Thompson, John F, Pires da Silva, Ines, Carlino, Matteo S, Menzies, Alexander M, Lo, Serigne, Palendira, Umaimainthan, Scolyer, Richard A, Long, Georgina V, Wilmott, James S

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Discovery and Validation of a Prostate Cancer Genomic Classifier that Predicts Early Metastasis Following Radical Prostatectomy nork Erho, Nicholas, Crisan, Anamaria, Vergara, Ismael A., Mitra, Anirban P., Ghadessi, Mercedeh, Buerki, Christine, Bergstralh, Eric J., Kollmeyer, Thomas, Fink, Stephanie, Haddad, Zaid, Zimmermann, Benedikt, Sierocinski, Thomas, Ballman, Karla V., Triche, Timothy J., Black, Peter C., Karnes, R. Jeffrey, Klee, George, Davicioni, Elai, Jenkins, Robert B.

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