Ohcanbohtosat - Velankar, Sameer

The Protein Data Bank in Europe (PDBe): bringing structure to biology Dahkki Velankar, Sameer, Kleywegt, Gerard J.

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Whither structural biologists? Dahkki Kleywegt, Gerard J., Velankar, Sameer

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Implementing an X-ray validation pipeline for the Protein Data Bank Dahkki Gore, Swanand, Velankar, Sameer, Kleywegt, Gerard J.

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Structural biology data archiving – where we are and what lies ahead Dahkki Kleywegt, Gerard J., Velankar, Sameer, Patwardhan, Ardan

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The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank Dahkki Westbrook, John D., Shao, Chenghua, Feng, Zukang, Zhuravleva, Marina, Velankar, Sameer, Young, Jasmine

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The role of structural bioinformatics resources in the era of integrative structural biology Dahkki Gutmanas, Aleksandras, Oldfield, Thomas J., Patwardhan, Ardan, Sen, Sanchayita, Velankar, Sameer, Kleywegt, Gerard J.

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Finding enzyme cofactors in Protein Data Bank Dahkki Mukhopadhyay, Abhik, Borkakoti, Neera, Pravda, Lukáš, Tyzack, Jonathan D, Thornton, Janet M, Velankar, Sameer

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Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs Dahkki Sen, Neeladri, Anishchenko, Ivan, Bordin, Nicola, Sillitoe, Ian, Velankar, Sameer, Baker, David, Orengo, Christine

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Automatic annotation of protein residues in published papers Dahkki Firth, Robert, Talo, Francesco, Venkatesan, Aravind, Mukhopadhyay, Abhik, McEntyre, Johanna, Velankar, Sameer, Morris, Chris

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BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management Dahkki Sehnal, David, Bittrich, Sebastian, Velankar, Sameer, Koča, Jaroslav, Svobodová, Radka, Burley, Stephen K., Rose, Alexander S.

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High-performance macromolecular data delivery and visualization for the web Dahkki Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav

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High-performance macromolecular data delivery and visualization for the web. Corrigendum Dahkki Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav

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THE ARCHIVING AND DISSEMINATION OF BIOLOGICAL STRUCTURE DATA Dahkki Berman, Helen M., Burley, Stephen K., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

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Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive Dahkki Burley, Stephen K., Berman, Helen M., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

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Validation of ligands in macromolecular structures determined by X-ray crystallography Dahkki Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer

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Worldwide Protein Data Bank validation information: usage and trends Dahkki Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer

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SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins Dahkki Dana, Jose M, Gutmanas, Aleksandras, Tyagi, Nidhi, Qi, Guoying, O’Donovan, Claire, Martin, Maria, Velankar, Sameer

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PDBeCIF: an open-source mmCIF/CIF parsing and processing package Dahkki van Ginkel, Glen, Pravda, Lukáš, Dana, José M., Varadi, Mihaly, Keller, Peter, Anyango, Stephen, Velankar, Sameer

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The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies Dahkki Waman, Vaishali P, Sen, Neeladri, Varadi, Mihaly, Daina, Antoine, Wodak, Shoshana J, Zoete, Vincent, Velankar, Sameer, Orengo, Christine

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New restraints and validation approaches for nucleic acid structures in PDB-REDO Dahkki de Vries, Ida, Kwakman, Tim, Lu, Xiang-Jun, Hekkelman, Maarten L., Deshpande, Mandar, Velankar, Sameer, Perrakis, Anastassis, Joosten, Robbie P.

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