Ngā hua rapu kaituhi

1

The Protein Data Bank in Europe (PDBe): bringing structure to biology mā Velankar, Sameer, Kleywegt, Gerard J.

I whakaputaina 2011

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2

Whither structural biologists? mā Kleywegt, Gerard J., Velankar, Sameer

I whakaputaina 2022

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3

Implementing an X-ray validation pipeline for the Protein Data Bank mā Gore, Swanand, Velankar, Sameer, Kleywegt, Gerard J.

I whakaputaina 2012

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4

Structural biology data archiving – where we are and what lies ahead mā Kleywegt, Gerard J., Velankar, Sameer, Patwardhan, Ardan

I whakaputaina 2018

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5

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank mā Westbrook, John D., Shao, Chenghua, Feng, Zukang, Zhuravleva, Marina, Velankar, Sameer, Young, Jasmine

I whakaputaina 2015

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6

The role of structural bioinformatics resources in the era of integrative structural biology mā Gutmanas, Aleksandras, Oldfield, Thomas J., Patwardhan, Ardan, Sen, Sanchayita, Velankar, Sameer, Kleywegt, Gerard J.

I whakaputaina 2013

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7

Finding enzyme cofactors in Protein Data Bank mā Mukhopadhyay, Abhik, Borkakoti, Neera, Pravda, Lukáš, Tyzack, Jonathan D, Thornton, Janet M, Velankar, Sameer

I whakaputaina 2019

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8

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs mā Sen, Neeladri, Anishchenko, Ivan, Bordin, Nicola, Sillitoe, Ian, Velankar, Sameer, Baker, David, Orengo, Christine

I whakaputaina 2022

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9

Automatic annotation of protein residues in published papers mā Firth, Robert, Talo, Francesco, Venkatesan, Aravind, Mukhopadhyay, Abhik, McEntyre, Johanna, Velankar, Sameer, Morris, Chris

I whakaputaina 2019

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
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10

BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management mā Sehnal, David, Bittrich, Sebastian, Velankar, Sameer, Koča, Jaroslav, Svobodová, Radka, Burley, Stephen K., Rose, Alexander S.

I whakaputaina 2020

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11

High-performance macromolecular data delivery and visualization for the web mā Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav

I whakaputaina 2020

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12

High-performance macromolecular data delivery and visualization for the web. Corrigendum mā Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav

I whakaputaina 2021

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13

THE ARCHIVING AND DISSEMINATION OF BIOLOGICAL STRUCTURE DATA mā Berman, Helen M., Burley, Stephen K., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

I whakaputaina 2016

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14

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive mā Burley, Stephen K., Berman, Helen M., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

I whakaputaina 2017

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15

Validation of ligands in macromolecular structures determined by X-ray crystallography mā Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer

I whakaputaina 2018

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
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16

Worldwide Protein Data Bank validation information: usage and trends mā Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer

I whakaputaina 2018

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
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17

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins mā Dana, Jose M, Gutmanas, Aleksandras, Tyagi, Nidhi, Qi, Guoying, O’Donovan, Claire, Martin, Maria, Velankar, Sameer

I whakaputaina 2019

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
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18

PDBeCIF: an open-source mmCIF/CIF parsing and processing package mā van Ginkel, Glen, Pravda, Lukáš, Dana, José M., Varadi, Mihaly, Keller, Peter, Anyango, Stephen, Velankar, Sameer

I whakaputaina 2021

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
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19

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies mā Waman, Vaishali P, Sen, Neeladri, Varadi, Mihaly, Daina, Antoine, Wodak, Shoshana J, Zoete, Vincent, Velankar, Sameer, Orengo, Christine

I whakaputaina 2020

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20

New restraints and validation approaches for nucleic acid structures in PDB-REDO mā de Vries, Ida, Kwakman, Tim, Lu, Xiang-Jun, Hekkelman, Maarten L., Deshpande, Mandar, Velankar, Sameer, Perrakis, Anastassis, Joosten, Robbie P.

I whakaputaina 2021

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Ngā hua rapu - Velankar, Sameer

The Protein Data Bank in Europe (PDBe): bringing structure to biology mā Velankar, Sameer, Kleywegt, Gerard J.

Whither structural biologists? mā Kleywegt, Gerard J., Velankar, Sameer

Implementing an X-ray validation pipeline for the Protein Data Bank mā Gore, Swanand, Velankar, Sameer, Kleywegt, Gerard J.

Structural biology data archiving – where we are and what lies ahead mā Kleywegt, Gerard J., Velankar, Sameer, Patwardhan, Ardan

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank mā Westbrook, John D., Shao, Chenghua, Feng, Zukang, Zhuravleva, Marina, Velankar, Sameer, Young, Jasmine

The role of structural bioinformatics resources in the era of integrative structural biology mā Gutmanas, Aleksandras, Oldfield, Thomas J., Patwardhan, Ardan, Sen, Sanchayita, Velankar, Sameer, Kleywegt, Gerard J.

Finding enzyme cofactors in Protein Data Bank mā Mukhopadhyay, Abhik, Borkakoti, Neera, Pravda, Lukáš, Tyzack, Jonathan D, Thornton, Janet M, Velankar, Sameer

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs mā Sen, Neeladri, Anishchenko, Ivan, Bordin, Nicola, Sillitoe, Ian, Velankar, Sameer, Baker, David, Orengo, Christine

Automatic annotation of protein residues in published papers mā Firth, Robert, Talo, Francesco, Venkatesan, Aravind, Mukhopadhyay, Abhik, McEntyre, Johanna, Velankar, Sameer, Morris, Chris

BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management mā Sehnal, David, Bittrich, Sebastian, Velankar, Sameer, Koča, Jaroslav, Svobodová, Radka, Burley, Stephen K., Rose, Alexander S.

High-performance macromolecular data delivery and visualization for the web mā Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav

High-performance macromolecular data delivery and visualization for the web. Corrigendum mā Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav

THE ARCHIVING AND DISSEMINATION OF BIOLOGICAL STRUCTURE DATA mā Berman, Helen M., Burley, Stephen K., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive mā Burley, Stephen K., Berman, Helen M., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

Validation of ligands in macromolecular structures determined by X-ray crystallography mā Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer

Worldwide Protein Data Bank validation information: usage and trends mā Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins mā Dana, Jose M, Gutmanas, Aleksandras, Tyagi, Nidhi, Qi, Guoying, O’Donovan, Claire, Martin, Maria, Velankar, Sameer

PDBeCIF: an open-source mmCIF/CIF parsing and processing package mā van Ginkel, Glen, Pravda, Lukáš, Dana, José M., Varadi, Mihaly, Keller, Peter, Anyango, Stephen, Velankar, Sameer

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies mā Waman, Vaishali P, Sen, Neeladri, Varadi, Mihaly, Daina, Antoine, Wodak, Shoshana J, Zoete, Vincent, Velankar, Sameer, Orengo, Christine

New restraints and validation approaches for nucleic acid structures in PDB-REDO mā de Vries, Ida, Kwakman, Tim, Lu, Xiang-Jun, Hekkelman, Maarten L., Deshpande, Mandar, Velankar, Sameer, Perrakis, Anastassis, Joosten, Robbie P.

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