Search Results - Velankar, Sameer

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  1. 1
    The Protein Data Bank in Europe (PDBe): bringing structure to biology

    The Protein Data Bank in Europe (PDBe): bringing structure to biology by Velankar, Sameer, Kleywegt, Gerard J.

    Published 2011
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  2. 2
    Whither structural biologists?

    Whither structural biologists? by Kleywegt, Gerard J., Velankar, Sameer

    Published 2022
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  3. 3
    Implementing an X-ray validation pipeline for the Protein Data Bank

    Implementing an X-ray validation pipeline for the Protein Data Bank by Gore, Swanand, Velankar, Sameer, Kleywegt, Gerard J.

    Published 2012
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  4. 4
    Structural biology data archiving – where we are and what lies ahead

    Structural biology data archiving – where we are and what lies ahead by Kleywegt, Gerard J., Velankar, Sameer, Patwardhan, Ardan

    Published 2018
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  5. 5
    The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank

    The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank by Westbrook, John D., Shao, Chenghua, Feng, Zukang, Zhuravleva, Marina, Velankar, Sameer, Young, Jasmine

    Published 2015
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  6. 6
    The role of structural bioinformatics resources in the era of integrative structural biology

    The role of structural bioinformatics resources in the era of integrative structural biology by Gutmanas, Aleksandras, Oldfield, Thomas J., Patwardhan, Ardan, Sen, Sanchayita, Velankar, Sameer, Kleywegt, Gerard J.

    Published 2013
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  7. 7
    Finding enzyme cofactors in Protein Data Bank

    Finding enzyme cofactors in Protein Data Bank by Mukhopadhyay, Abhik, Borkakoti, Neera, Pravda, Lukáš, Tyzack, Jonathan D, Thornton, Janet M, Velankar, Sameer

    Published 2019
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  8. 8
    Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs

    Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs by Sen, Neeladri, Anishchenko, Ivan, Bordin, Nicola, Sillitoe, Ian, Velankar, Sameer, Baker, David, Orengo, Christine

    Published 2022
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  9. 9
    Automatic annotation of protein residues in published papers

    Automatic annotation of protein residues in published papers by Firth, Robert, Talo, Francesco, Venkatesan, Aravind, Mukhopadhyay, Abhik, McEntyre, Johanna, Velankar, Sameer, Morris, Chris

    Published 2019
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  10. 10
    BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management

    BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management by Sehnal, David, Bittrich, Sebastian, Velankar, Sameer, Koča, Jaroslav, Svobodová, Radka, Burley, Stephen K., Rose, Alexander S.

    Published 2020
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  11. 11
    High-performance macromolecular data delivery and visualization for the web

    High-performance macromolecular data delivery and visualization for the web by Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav

    Published 2020
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  12. 12
    High-performance macromolecular data delivery and visualization for the web. Corrigendum

    High-performance macromolecular data delivery and visualization for the web. Corrigendum by Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav

    Published 2021
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  13. 13
    THE ARCHIVING AND DISSEMINATION OF BIOLOGICAL STRUCTURE DATA

    THE ARCHIVING AND DISSEMINATION OF BIOLOGICAL STRUCTURE DATA by Berman, Helen M., Burley, Stephen K., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

    Published 2016
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  14. 14
    Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive

    Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive by Burley, Stephen K., Berman, Helen M., Kleywegt, Gerard J., Markley, John L., Nakamura, Haruki, Velankar, Sameer

    Published 2017
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  15. 15
    Validation of ligands in macromolecular structures determined by X-ray crystallography

    Validation of ligands in macromolecular structures determined by X-ray crystallography by Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer

    Published 2018
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  16. 16
    Worldwide Protein Data Bank validation information: usage and trends

    Worldwide Protein Data Bank validation information: usage and trends by Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer

    Published 2018
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  17. 17
    SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins

    SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins by Dana, Jose M, Gutmanas, Aleksandras, Tyagi, Nidhi, Qi, Guoying, O’Donovan, Claire, Martin, Maria, Velankar, Sameer

    Published 2019
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  18. 18
    PDBeCIF: an open-source mmCIF/CIF parsing and processing package

    PDBeCIF: an open-source mmCIF/CIF parsing and processing package by van Ginkel, Glen, Pravda, Lukáš, Dana, José M., Varadi, Mihaly, Keller, Peter, Anyango, Stephen, Velankar, Sameer

    Published 2021
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  19. 19
    The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies

    The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies by Waman, Vaishali P, Sen, Neeladri, Varadi, Mihaly, Daina, Antoine, Wodak, Shoshana J, Zoete, Vincent, Velankar, Sameer, Orengo, Christine

    Published 2020
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  20. 20
    New restraints and validation approaches for nucleic acid structures in PDB-REDO

    New restraints and validation approaches for nucleic acid structures in PDB-REDO by de Vries, Ida, Kwakman, Tim, Lu, Xiang-Jun, Hekkelman, Maarten L., Deshpande, Mandar, Velankar, Sameer, Perrakis, Anastassis, Joosten, Robbie P.

    Published 2021
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