Search Results - Vasilis Ntranos

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  1. 1
    The barcode, UMI, set format and BUStools

    The barcode, UMI, set format and BUStools by Páll Melsted, Vasilis Ntranos, Lior Pachter

    Published 2019
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  2. 2
    Determining sequencing depth in a single-cell RNA-seq experiment

    Determining sequencing depth in a single-cell RNA-seq experiment by Martin Jinye Zhang, Vasilis Ntranos, David Tse

    Published 2020
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  3. 3
    A discriminative learning approach to differential expression analysis for single-cell RNA-seq

    A discriminative learning approach to differential expression analysis for single-cell RNA-seq by Vasilis Ntranos, Lynn Yi, Páll Melsted, Lior Pachter

    Published 2019
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  4. 4
    Genome-wide prediction of disease variants with a deep protein language model

    Genome-wide prediction of disease variants with a deep protein language model by Nadav Brandes, Grant Goldman, Charlotte H. Wang, Chun Ye, Vasilis Ntranos

    Published 2022
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  5. 5
    Genome-wide prediction of disease variant effects with a deep protein language model

    Genome-wide prediction of disease variant effects with a deep protein language model by Nadav Brandes, Grant Goldman, Charlotte H. Wang, Chun Ye, Vasilis Ntranos

    Published 2023
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  6. 6
    Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts

    Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts by Vasilis Ntranos, Govinda M. Kamath, Jesse M. Zhang, Lior Pachter, David Tse

    Published 2016
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  7. 7
    Targeted Elimination of Senescent Beta Cells Prevents Type 1 Diabetes

    Targeted Elimination of Senescent Beta Cells Prevents Type 1 Diabetes by Peter J. Thompson, Ajit Shah, Vasilis Ntranos, Frédéric Van Gool, Mark A. Atkinson, Anil Bhushan

    Published 2019
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  8. 8
    Sox9 regulates alternative splicing and pancreatic beta cell function

    Sox9 regulates alternative splicing and pancreatic beta cell function by Sapna Puri, Hasna Maachi, Gopika G. Nair, Holger A. Russ, Richard Chen, Pamela Pulimeno, Zachary Cutts, Vasilis Ntranos, Matthias Hebrok

    Published 2024
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  9. 9
    Investigating the sources of variable impact of pathogenic variants in monogenic metabolic conditions

    Investigating the sources of variable impact of pathogenic variants in monogenic metabolic conditions by Angela Wei, Richard Border, Boyang Fu, Sinéad Cullina, Nadav Brandes, Seon-Kyeong Jang, Sriram Sankararaman, Eimear E. Kenny, Miriam S. Udler, Vasilis Ntranos, Noah Zaitlen, Valerie A. Arboleda

    Published 2025
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  10. 10
    Phenotypic pleiotropy of missense variants in human B cell-confinement receptor P2RY8

    Phenotypic pleiotropy of missense variants in human B cell-confinement receptor P2RY8 by Taylor N. LaFlam, Christian B. Billesbølle, Tuan Dinh, Finn D. Wolfreys, Erick Lu, Tomas Matteson, Jinping An, Ying Xu, Ashutosh Singhal, Nadav Brandes, Vasilis Ntranos, Aashish Manglik, Jason G. Cyster, Chun Ye

    Published 2025
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  11. 11
    Single-cell transcriptional profiling of human thymic stroma uncovers novel cellular heterogeneity in the thymic medulla

    Single-cell transcriptional profiling of human thymic stroma uncovers novel cellular heterogeneity in the thymic medulla by Jhoanne L. Bautista, Nathan T. Cramer, Corey N. Miller, Jessica Chavez, David I. Berrios, Lauren Byrnes, Joe Germino, Vasilis Ntranos, Julie B. Sneddon, Trevor D. Burt, James M. Gardner, Chun Ye, Mark S. Anderson, Audrey V. Parent

    Published 2021
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  12. 12
    Single-cell multiomics defines tolerogenic extrathymic Aire-expressing populations with unique homology to thymic epithelium

    Single-cell multiomics defines tolerogenic extrathymic Aire-expressing populations with unique homology to thymic epithelium by Jiaxi Wang, Caleb A. Lareau, Jhoanne L. Bautista, Alexander R. Gupta, Katalin Sándor, Joe Germino, Yajie Yin, Matthew P. Arvedson, Gabriella C. Reeder, Nathan T. Cramer, Fang Xie, Vasilis Ntranos, Ansuman T. Satpathy, Mark S. Anderson, James M. Gardner

    Published 2021
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  13. 13
    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types by Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S. Adkins, Andrew Aldridge, Seth A. Ament, António Pinto‐Duarte, Anna Bartlett, M. Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Tommaso Biancalani, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Heather H. Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L. Dougherty, Wayne I. Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle Giglio, Jeff Goldy, Mike Hawrylycz, Hector Roux de Bézieux, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jonathan Crabtree, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem Nadaf, Joseph R. Nery, Sheng-Yong Niu, Joshua Orvis, Julia Osteen, Thanh Pham, Olivier Poirion, Sebastian Preißl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline Rivkin, Kimberly A. Smith, Kelly Street, Josef Šulc, Thuc Nghi Nguyen, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Valentine Svensson, Charles Vanderburg, Vasilis Ntranos, Cindy T. J. van Velthoven, Xinxin Wang, Owen White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel

    Published 2020
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  14. 14
    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

    A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex by Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew Aldridge, Seth A. Ament, Anna Bartlett, M. Margarita Behrens, Koen Van Den Berge, Darren Bertagnolli, Hector Roux de Bézieux, Tommaso Biancalani, A. Sina Booeshaghi, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Jonathan Crabtree, Heather H. Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L. Dougherty, Wayne I. Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle Giglio, Jeff Goldy, Mike Hawrylycz, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem Nadaf, Joseph R. Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia Osteen, Thanh Pham, António Pinto‐Duarte, Olivier Poirion, Sebastian Preißl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline Rivkin, Kimberly A. Smith, Kelly Street, Josef Šulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles Vanderburg, Cindy T. J. van Velthoven, Xinxin Wang, Owen White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel

    Published 2021
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