Rezultaty - Várnai, Csilla

Efficient Parameter Estimation of Generalizable Coarse-Grained Protein Force Fields Using Contrastive Divergence: A Maximum Likelihood Approach od Várnai, Csilla, Burkoff, Nikolas S., Wild, David L.

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Improving protein-protein interaction prediction using evolutionary information from low-quality MSAs od Várnai, Csilla, Burkoff, Nikolas S., Wild, David L.

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Exploring the Energy Landscapes of Protein Folding Simulations with Bayesian Computation od Burkoff, Nikolas S., Várnai, Csilla, Wells, Stephen A., Wild, David L.

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Comparison of Hi-C results using in-solution versus in-nucleus ligation od Nagano, Takashi, Várnai, Csilla, Schoenfelder, Stefan, Javierre, Biola-Maria, Wingett, Steven W., Fraser, Peter

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Cell-cycle dynamics of chromosomal organisation at single-cell resolution od Nagano, Takashi, Lubling, Yaniv, Várnai, Csilla, Dudley, Carmel, Leung, Wing, Baran, Yael, Mendelson-Cohen, Netta, Wingett, Steven, Fraser, Peter, Tanay, Amos

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Widespread reorganisation of pluripotent factor binding and gene regulatory interactions between human pluripotent states od Chovanec, Peter, Collier, Amanda J., Krueger, Christel, Várnai, Csilla, Semprich, Claudia I., Schoenfelder, Stefan, Corcoran, Anne E., Rugg-Gunn, Peter J.

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CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data od Cairns, Jonathan, Freire-Pritchett, Paula, Wingett, Steven W., Várnai, Csilla, Dimond, Andrew, Plagnol, Vincent, Zerbino, Daniel, Schoenfelder, Stefan, Javierre, Biola-Maria, Osborne, Cameron, Fraser, Peter, Spivakov, Mikhail

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Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells od Freire-Pritchett, Paula, Schoenfelder, Stefan, Várnai, Csilla, Wingett, Steven W, Cairns, Jonathan, Collier, Amanda J, García-Vílchez, Raquel, Furlan-Magaril, Mayra, Osborne, Cameron S, Fraser, Peter, Rugg-Gunn, Peter J, Spivakov, Mikhail

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Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis od Groves, Ian J., Drane, Emma L. A., Michalski, Marco, Monahan, Jack M., Scarpini, Cinzia G., Smith, Stephen P., Bussotti, Giovanni, Várnai, Csilla, Schoenfelder, Stefan, Fraser, Peter, Enright, Anton J., Coleman, Nicholas

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The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle od Furlan-Magaril, Mayra, Ando-Kuri, Masami, Arzate-Mejía, Rodrigo G., Morf, Jörg, Cairns, Jonathan, Román-Figueroa, Abraham, Tenorio-Hernández, Luis, Poot-Hernández, A. César, Andrews, Simon, Várnai, Csilla, Virk, Boo, Wingett, Steven W., Fraser, Peter

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Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins od Wutz, Gordana, Várnai, Csilla, Nagasaka, Kota, Cisneros, David A, Stocsits, Roman R, Tang, Wen, Schoenfelder, Stefan, Jessberger, Gregor, Muhar, Matthias, Hossain, M Julius, Walther, Nike, Koch, Birgit, Kueblbeck, Moritz, Ellenberg, Jan, Zuber, Johannes, Fraser, Peter, Peters, Jan‐Michael

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Severity of COVID-19 in children with cancer: Report from the United Kingdom Paediatric Coronavirus Cancer Monitoring Project od Millen, Gerard C., Arnold, Roland, Cazier, Jean-Baptiste, Curley, Helen, Feltbower, Richard G., Gamble, Ashley, Glaser, Adam W., Grundy, Richard G., Lee, Lennard Y. W., McCabe, Martin G., Phillips, Robert S., Stiller, Charles A., Várnai, Csilla, Kearns, Pamela R.

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COVID-19 in children with haematological malignancies od Millen, Gerard Cathal, Arnold, Roland, Cazier, Jean-Baptiste, Curley, Helen, Feltbower, Richard, Gamble, Ashley, Glaser, Adam, Grundy, Richard G, Kirton, Laura, Lee, Lennard Y W, McCabe, Martin G, Palles, Claire, Phillips, Bob, Stiller, Charles A, Varnai, Csilla, Kearns, Pamela

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Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells od Koohy, Hashem, Bolland, Daniel J., Matheson, Louise S., Schoenfelder, Stefan, Stellato, Claudia, Dimond, Andrew, Várnai, Csilla, Chovanec, Peter, Chessa, Tamara, Denizot, Jeremy, Manzano Garcia, Raquel, Wingett, Steven W., Freire-Pritchett, Paula, Nagano, Takashi, Hawkins, Phillip, Stephens, Len, Elderkin, Sarah, Spivakov, Mikhail, Fraser, Peter, Corcoran, Anne E., Varga-Weisz, Patrick D.

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ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesin(STAG1) from WAPL od Wutz, Gordana, Ladurner, Rene, St Hilaire, Brian Glenn, Stocsits, Roman R, Nagasaka, Kota, Pignard, Benoit, Sanborn, Adrian, Tang, Wen, Várnai, Csilla, Ivanov, Miroslav P, Schoenfelder, Stefan, van der Lelij, Petra, Huang, Xingfan, Dürnberger, Gerhard, Roitinger, Elisabeth, Mechtler, Karl, Davidson, Iain Finley, Fraser, Peter, Lieberman-Aiden, Erez, Peters, Jan-Michael

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Mortality Among Adults With Cancer Undergoing Chemotherapy or Immunotherapy and Infected With COVID-19 od Várnai, Csilla, Palles, Claire, Arnold, Roland, Curley, Helen M., Purshouse, Karin, Cheng, Vinton W. T., Booth, Stephen, Campton, Naomi A., Collins, Graham P., Hughes, Daniel J., Kulasekararaj, Austin G., Lee, Alvin J. X., Olsson-Brown, Anna C., Sharma-Oates, Archana, Van Hemelrijck, Mieke, Lee, Lennard Y. W., Kerr, Rachel, Middleton, Gary, Cazier, Jean-Baptiste

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Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters od Javierre, Biola M., Burren, Oliver S., Wilder, Steven P., Kreuzhuber, Roman, Hill, Steven M., Sewitz, Sven, Cairns, Jonathan, Wingett, Steven W., Várnai, Csilla, Thiecke, Michiel J., Burden, Frances, Farrow, Samantha, Cutler, Antony J., Rehnström, Karola, Downes, Kate, Grassi, Luigi, Kostadima, Myrto, Freire-Pritchett, Paula, Wang, Fan, Stunnenberg, Hendrik G., Todd, John A., Zerbino, Daniel R., Stegle, Oliver, Ouwehand, Willem H., Frontini, Mattia, Wallace, Chris, Spivakov, Mikhail, Fraser, Peter

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Key findings from the UKCCMP cohort of 877 patients with haematological malignancy and COVID‐19: disease control as an important factor relative to recent chemotherapy or anti‐CD20... od Booth, Stephen, Curley, Helen M., Varnai, Csilla, Arnold, Roland, Lee, Lennard Y. W., Campton, Naomi A., Cook, Gordon, Purshouse, Karin, Aries, James, Innes, Andrew, Cook, Lucy B., Tomkins, Oliver, Oram, Helen S., Tilby, Michael, Kulasekararaj, Austin, Wrench, David, Dolly, Saoirse, Newsom‐Davies, Tom, Pettengell, Ruth, Gault, Abigail, Moody, Sam, Mittal, Sajjan, Altohami, Mohammed, Tillet, Tania, Illingworth, Jack, Mukherjee, Leena, Apperly, Jane, Ashcroft, John, Rabin, Neil, Carmichael, Jonathan, Cazier, Jean‐Baptiste, Kerr, Rachel, Middleton, Gary, Collins, Graham P., Palles, Claire

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COVID-19 mortality in patients with cancer on chemotherapy or other anticancer treatments: a prospective cohort study od Lee, Lennard YW, Cazier, Jean-Baptiste, Angelis, Vasileios, Arnold, Roland, Bisht, Vartika, Campton, Naomi A, Chackathayil, Julia, Cheng, Vinton WT, Curley, Helen M, Fittall, Matthew W, Freeman-Mills, Luke, Gennatas, Spyridon, Goel, Anshita, Hartley, Simon, Hughes, Daniel J, Kerr, David, Lee, Alvin JX, Lee, Rebecca J, McGrath, Sophie E, Middleton, Christopher P, Murugaesu, Nirupa, Newsom-Davis, Thomas, Okines, Alicia FC, Olsson-Brown, Anna C, Palles, Claire, Pan, Yi, Pettengell, Ruth, Powles, Thomas, Protheroe, Emily A, Purshouse, Karin, Sharma-Oates, Archana, Sivakumar, Shivan, Smith, Ashley J, Starkey, Thomas, Turnbull, Chris D, Várnai, Csilla, Yousaf, Nadia, Kerr, Rachel, Middleton, Gary

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COVID-19 prevalence and mortality in patients with cancer and the effect of primary tumour subtype and patient demographics: a prospective cohort study od Lee, Lennard Y W, Cazier, Jean-Baptiste, Starkey, Thomas, Briggs, Sarah E W, Arnold, Roland, Bisht, Vartika, Booth, Stephen, Campton, Naomi A, Cheng, Vinton W T, Collins, Graham, Curley, Helen M, Earwaker, Philip, Fittall, Matthew W, Gennatas, Spyridon, Goel, Anshita, Hartley, Simon, Hughes, Daniel J, Kerr, David, Lee, Alvin J X, Lee, Rebecca J, Lee, Siow Ming, Mckenzie, Hayley, Middleton, Chris P, Murugaesu, Nirupa, Newsom-Davis, Tom, Olsson-Brown, Anna C, Palles, Claire, Powles, Thomas, Protheroe, Emily A, Purshouse, Karin, Sharma-Oates, Archana, Sivakumar, Shivan, Smith, Ashley J, Topping, Oliver, Turnbull, Chris D, Várnai, Csilla, Briggs, Adam D M, Middleton, Gary, Kerr, Rachel

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