Ngā hua rapu - Turpaz, Yaron

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues mā Dundas, Joe, Ouyang, Zheng, Tseng, Jeffery, Binkowski, Andrew, Turpaz, Yaron, Liang, Jie

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Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA mā Thompson, Karol L, Pine, P Scott, Rosenzweig, Barry A, Turpaz, Yaron, Retief, Jacques

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Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping... mā Gardina, Paul J, Lo, Ken C, Lee, Walter, Cowell, John K, Turpaz, Yaron

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Overlay Tool(©) for aCGHViewer(©): An Analysis Module Built for aCGHViewer(©) used to Perform Comparisons of Data Derived from Different Microarray Platforms mā Lo, Ken C., Shankar, Ganesh, Turpaz, Yaron, Bailey, Dione, Rossi, Michael R., Burkhardt, Tania, Liang, Ping, Cowell, John K.

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The blood DNA virome in 8,000 humans mā Moustafa, Ahmed, Xie, Chao, Kirkness, Ewen, Biggs, William, Wong, Emily, Turpaz, Yaron, Bloom, Kenneth, Delwart, Eric, Nelson, Karen E., Venter, J. Craig, Telenti, Amalio

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DNA Copy Number Analysis in Gastrointestinal Stromal Tumors Using Gene Expression Microarrays mā Antonescu, Cristina R., Wu, Kai, Xing, Guoliang Leon, Cao, Manqiu, Turpaz, Yaron, Leversha, Margaret A., Hubbell, Earl, Maki, Robert G., Miyada, C. Garrett, Pillai, Raji

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The DNA Architectural Protein HMGB1 Facilitates RTA-Mediated Viral Gene Expression in Gamma-2 Herpesviruses mā Jung Song, Moon, Hwang, Seungmin, Wong, Wendy, Round, June, Martinez-Guzman, DeeAnn, Turpaz, Yaron, Liang, Jie, Wong, Ben, Johnson, Reid C., Carey, Michael, Sun, Ren

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Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array mā Gardina, Paul J, Clark, Tyson A, Shimada, Brian, Staples, Michelle K, Yang, Qing, Veitch, James, Schweitzer, Anthony, Awad, Tarif, Sugnet, Charles, Dee, Suzanne, Davies, Christopher, Williams, Alan, Turpaz, Yaron

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Cistrome: an integrative platform for transcriptional regulation studies mā Liu, Tao, Ortiz, Jorge A, Taing, Len, Meyer, Clifford A, Lee, Bernett, Zhang, Yong, Shin, Hyunjin, Wong, Swee S, Ma, Jian, Lei, Ying, Pape, Utz J, Poidinger, Michael, Chen, Yiwen, Yeung, Kevin, Brown, Myles, Turpaz, Yaron, Liu, X Shirley

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Fast and accurate HLA typing from short-read next-generation sequence data with xHLA mā Xie, Chao, Yeo, Zhen Xuan, Wong, Marie, Piper, Jason, Long, Tao, Kirkness, Ewen F., Biggs, William H., Bloom, Ken, Spellman, Stephen, Vierra-Green, Cynthia, Brady, Colleen, Scheuermann, Richard H., Telenti, Amalio, Howard, Sally, Brewerton, Suzanne, Turpaz, Yaron, Venter, J. Craig

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Massively parallel pathogen identification using high‐density microarrays mā Berthet, Nicolas, Dickinson, Philip, Filliol, Ingrid, Reinhardt, Anita K., Batejat, Christophe, Vallaeys, Tatiana, Kong, Katherine A., Davies, Christopher, Lee, Walter, Zhang, Shenglan, Turpaz, Yaron, Heym, Beate, Coralie, Gilberte, Dacheux, Laurent, Burguière, Ana Maria, Bourhy, Hervé, Old, Iain G., Manuguerra, Jean‐Claude, Cole, Stewart T., Kennedy, Giulia C.

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CYP4F2 genetic variant alters required warfarin dose mā Caldwell, Michael D., Awad, Tarif, Johnson, Julie A., Gage, Brian F., Falkowski, Mat, Gardina, Paul, Hubbard, Jason, Turpaz, Yaron, Langaee, Taimour Y., Eby, Charles, King, Cristi R., Brower, Amy, Schmelzer, John R., Glurich, Ingrid, Vidaillet, Humberto J., Yale, Steven H., Qi Zhang, Kai, Berg, Richard L., Burmester, James K.

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A gene expression signature of CD34(+) cells to predict major cytogenetic response in chronic-phase chronic myeloid leukemia patients treated with imatinib mā McWeeney, Shannon K., Pemberton, Lucy C., Loriaux, Marc M., Vartanian, Kristina, Willis, Stephanie G., Yochum, Gregory, Wilmot, Beth, Turpaz, Yaron, Pillai, Raji, Druker, Brian J., Snead, Jennifer L., MacPartlin, Mary, O'Brien, Stephen G., Melo, Junia V., Lange, Thoralf, Harrington, Christina A., Deininger, Michael W. N.

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Deep sequencing of 10,000 human genomes mā Telenti, Amalio, Pierce, Levi C. T., Biggs, William H., di Iulio, Julia, Wong, Emily H. M., Fabani, Martin M., Kirkness, Ewen F., Moustafa, Ahmed, Shah, Naisha, Xie, Chao, Brewerton, Suzanne C., Bulsara, Nadeem, Garner, Chad, Metzker, Gary, Sandoval, Efren, Perkins, Brad A., Och, Franz J., Turpaz, Yaron, Venter, J. Craig

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Using RNA sample titrations to assess microarray platform performance and normalization techniques mā Shippy, Richard, Fulmer-Smentek, Stephanie, Jensen, Roderick V, Jones, Wendell D, Wolber, Paul K, Johnson, Charles D, Pine, P Scott, Boysen, Cecilie, Guo, Xu, Chudin, Eugene, Sun, Yongming Andrew, Willey, James C, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Setterquist, Robert A, Wilson, Mike, Lucas, Anne Bergstrom, Novoradovskaya, Natalia, Papallo, Adam, Turpaz, Yaron, Baker, Shawn C, Warrington, Janet A, Shi, Leming, Herman, Damir

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Use of a mixed tissue RNA design for performance assessments on multiple microarray formats mā Thompson, Karol L., Rosenzweig, Barry A., Pine, P. Scott, Retief, Jacques, Turpaz, Yaron, Afshari, Cynthia A., Hamadeh, Hisham K., Damore, Michael A., Boedigheimer, Michael, Blomme, Eric, Ciurlionis, Rita, Waring, Jeffrey F., Fuscoe, James C., Paules, Richard, Tucker, Charles J., Fare, Thomas, Coffey, Ernest M., He, Yudong, Collins, Patrick J., Jarnagin, Kurt, Fujimoto, Susan, Ganter, Brigitte, Kiser, Gretchen, Kaysser-Kranich, Tamma, Sina, Joseph, Sistare, Frank D.

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Identification of individuals by trait prediction using whole-genome sequencing data mā Lippert, Christoph, Sabatini, Riccardo, Maher, M. Cyrus, Kang, Eun Yong, Lee, Seunghak, Arikan, Okan, Harley, Alena, Bernal, Axel, Garst, Peter, Lavrenko, Victor, Yocum, Ken, Wong, Theodore, Zhu, Mingfu, Yang, Wen-Yun, Chang, Chris, Lu, Tim, Lee, Charlie W. H., Hicks, Barry, Ramakrishnan, Smriti, Tang, Haibao, Xie, Chao, Piper, Jason, Brewerton, Suzanne, Turpaz, Yaron, Telenti, Amalio, Roby, Rhonda K., Och, Franz J., Venter, J. Craig

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Precision medicine screening using whole-genome sequencing and advanced imaging to identify disease risk in adults mā Perkins, Bradley A., Caskey, C. Thomas, Brar, Pamila, Dec, Eric, Karow, David S., Kahn, Andrew M., Hou, Ying-Chen Claire, Shah, Naisha, Boeldt, Debbie, Coughlin, Erin, Hands, Gabby, Lavrenko, Victor, Yu, James, Procko, Andrea, Appis, Julia, Dale, Anders M., Guo, Lining, Jönsson, Thomas J., Wittmann, Bryan M., Bartha, Istvan, Ramakrishnan, Smriti, Bernal, Axel, Brewer, James B., Brewerton, Suzanne, Biggs, William H., Turpaz, Yaron, Venter, J. Craig

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The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies mā Shi, Leming, Jones, Wendell D, Jensen, Roderick V, Harris, Stephen C, Perkins, Roger G, Goodsaid, Federico M, Guo, Lei, Croner, Lisa J, Boysen, Cecilie, Fang, Hong, Qian, Feng, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick J, Fan, Xiao-hui, Frueh, Felix W, Fuscoe, James C, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest S, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron L, Puri, Raj K, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue Jane, Warrington, Janet A, Willey, James C, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Wolfinger, Russell D, Tong, Weida

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