Search Results - Tobias Rausch

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  1. 1
    Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files

    Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files by Tobias Rausch, Markus Hsi-Yang Fritz, Andreas Untergasser, Vladimı́r Beneš

    Published 2020
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  2. 2
    Crossovers are regulated by a conserved and disordered synaptonemal complex domain

    Crossovers are regulated by a conserved and disordered synaptonemal complex domain by Ana Rita Rodrigues Neves, Ivana Čavka, Tobias Rausch, Simone Köhler

    Published 2025
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  3. 3
    Alfred: interactive multi-sample BAM alignment statistics, feature counting and feature annotation for long- and short-read sequencing

    Alfred: interactive multi-sample BAM alignment statistics, feature counting and feature annotation for long- and short-read sequencing by Tobias Rausch, Markus Hsi-Yang Fritz, Jan O. Korbel, Vladimı́r Beneš

    Published 2018
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  4. 4
    RazerS—fast read mapping with sensitivity control

    RazerS—fast read mapping with sensitivity control by David Weese, Anne‐Katrin Emde, Tobias Rausch, Andreas Gogol‐Döring, Knut Reinert

    Published 2009
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  5. 5
    DELLY: structural variant discovery by integrated paired-end and split-read analysis

    DELLY: structural variant discovery by integrated paired-end and split-read analysis by Tobias Rausch, Thomas Zichner, Andreas Schlattl, Adrian M. Stütz, Vladimı́r Beneš, Jan O. Korbel

    Published 2012
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  6. 6
    VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing

    VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing by Davide Bolognini, Ashley D. Sanders, Jan O. Korbel, Alberto Magi, Vladimı́r Beneš, Tobias Rausch

    Published 2019
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  7. 7
    Identification of cytokine-induced modulation of microRNA expression and secretion as measured by a novel microRNA specific qPCR assay

    Identification of cytokine-induced modulation of microRNA expression and secretion as measured by a novel microRNA specific qPCR assay by Vladimı́r Beneš, Paul Collier, Claus Kordes, Jens Stolte, Tobias Rausch, Martina U. Muckentaler, Dieter Häussinger, M. Castoldi

    Published 2015
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  8. 8
    Impact of genomic structural variation in <i>Drosophila melanogaster</i> based on population-scale sequencing

    Impact of genomic structural variation in <i>Drosophila melanogaster</i> based on population-scale sequencing by Thomas Zichner, David Garfield, Tobias Rausch, Adrian M. Stütz, Enrico Cannavò, M Braun, Eileen E. M. Furlong, Jan O. Korbel

    Published 2012
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  9. 9
    A highly soluble Sleeping Beauty transposase improves control of gene insertion

    A highly soluble Sleeping Beauty transposase improves control of gene insertion by Irma Querques, Andreas Mades, Cecilia Zuliani, Csaba Miskey, Miriam Alb, Esther Grueso, Markus Machwirth, Tobias Rausch, Hermann Einsele, Zoltán Ivics, Michael Hudecek, O. Barábas

    Published 2019
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  10. 10
    <i>JUNB</i>, <i>DUSP2</i>, <i>SGK1</i>, <i>SOCS1</i> and <i>CREBBP</i> are frequently mutated in T-cell/histiocyte-rich large B-cell lymphoma

    <i>JUNB</i>, <i>DUSP2</i>, <i>SGK1</i>, <i>SOCS1</i> and <i>CREBBP</i> are frequently mutated in T-cell/histiocyte-rich large B-cell lymphoma by Bianca Schuhmacher, Julia Bein, Tobias Rausch, Vladimı́r Beneš, Thomas Tousseyn, Martine Vornanen, Maurilio Ponzoni, Lorenz Thurner, Randy D. Gascoyne, Christian Steidl, Ralf Küppers, Martin‐Leo Hansmann, Sylvia Hartmann

    Published 2018
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  11. 11
    Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes

    Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes by Jana Ebler, Peter Ebert, Wayne E. Clarke, Tobias Rausch, Peter A. Audano, Torsten Houwaart, Yafei Mao, Jan O. Korbel, Evan E. Eichler, Michael C. Zody, Alexander Dilthey, Tobias Marschall

    Published 2022
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  12. 12
    Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures

    Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures by Tobias Rausch, René Snajder, Adrien Léger, Milena Simović, Mădălina Giurgiu, Laura Villacorta, Anton G. Henssen, Stefan Fröhling, Oliver Stegle, Ewan Birney, Marc Jan Bonder, Aurélie Ernst, Jan O. Korbel

    Published 2023
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  13. 13
    Long-read sequencing and structural variant characterization in 1,019 samples from the 1000 Genomes Project

    Long-read sequencing and structural variant characterization in 1,019 samples from the 1000 Genomes Project by Siegfried Schloissnig, Samarendra Pani, Bernardo Rodríguez–Martín, Jana Ebler, Carsten Hain, Vasiliki Tsapalou, Arda Söylev, Patrick Hüther, Hufsah Ashraf, Timofey Prodanov, Mila Asparuhova, Sarah Hunt, Tobias Rausch, Tobias Marschall, Jan O. Korbel

    Published 2024
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  14. 14
    Identification of novel follicular dendritic cell sarcoma markers, FDCSP and SRGN, by whole transcriptome sequencing

    Identification of novel follicular dendritic cell sarcoma markers, FDCSP and SRGN, by whole transcriptome sequencing by Luisa Lorenzi, Claudia Döring, Tobias Rausch, Vladimı́r Beneš, Silvia Lonardi, Mattia Bugatti, Elı́as Campo, José Cabeçadas, Ingrid Simonitsch‐Klupp, Anita Borges, Jay B. Mehta, Claudio Agostinelli, Stefano Pileri, Fabio Facchetti, Martin‐Leo Hansmann, Sylvia Hartmann

    Published 2017
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  15. 15
    Genomic insights into the pathogenesis of Epstein–Barr virus-associated diffuse large B-cell lymphoma by whole-genome and targeted amplicon sequencing

    Genomic insights into the pathogenesis of Epstein–Barr virus-associated diffuse large B-cell lymphoma by whole-genome and targeted amplicon sequencing by Niklas Gebauer, Axel Künstner, Julius Ketzer, Hanno M. Witte, Tobias Rausch, Vladimı́r Beneš, Jürgen Zimmermann, Judith Gebauer, Hartmut Merz, Veronica Bernard, Lana Harder, Katharina Ratjen, Stefan Gesk, Wolfgang Peter, Yannik Busch, Peter Trojok, Nikolas von Bubnoff, Harald Biersack, Hauke Busch, Alfred C. Feller

    Published 2021
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  16. 16
    Identification of a genetically defined ultra-high-risk group in relapsed pediatric T-lymphoblastic leukemia

    Identification of a genetically defined ultra-high-risk group in relapsed pediatric T-lymphoblastic leukemia by Paulina Richter‐Pechańska, Joachim B. Kunz, Jana Hof, M Zimmermann, Tobias Rausch, Obul Reddy Bandapalli, Ekaterina A. Orlova, Greta Scapinello, Judit C. Sági, Martin Stanulla, Martin Schrappe, Gunnar Cario, Renate Kirschner‐Schwabe, Cornelia Eckert, Vladimı́r Beneš, Jan O. Korbel, Martina U. Muckenthaler, Andreas E. Kulozik

    Published 2017
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  17. 17
    Cell-type-specific consequences of mosaic structural variants in hematopoietic stem and progenitor cells

    Cell-type-specific consequences of mosaic structural variants in hematopoietic stem and progenitor cells by Karen Grimes, Hyobin Jeong, Amanda Amoah, Nuo Xu, Julian Niemann, Benjamin Raeder, Patrick Hasenfeld, Catherine Brasseur, Tobias Rausch, Eva Benito, Johann-Christoph Jann, Daniel Nowak, Ramiz Emini, Markus Hoenicka, Andreas Liebold, Anthony D. Ho, Shimin Shuai, Hartmut Geiger, Ashley D. Sanders, Jan O. Korbel

    Published 2024
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  18. 18
    Unveiling the intriguing relationship: oncogenic <scp><i>KRAS</i></scp>, morphological shifts, and mutational complexity in pancreatic mucinous cystic neoplasms

    Unveiling the intriguing relationship: oncogenic <scp><i>KRAS</i></scp>, morphological shifts, and mutational complexity in pancreatic mucinous cystic neoplasms by Schulte, A. Beck, Ralf Marienfeld, Ninel Azoitei, Thomas F.E. Barth, Alica K. Beutel, Vladimı́r Beneš, Markus W. Büchler, Nadine T. Gaisa, Katja Kilani, Nathalia A. Giese, Christoph Michalski, Peter Möller, Lukas Perkhofer, Tobias Rausch, Stefan Repky, Élodie Roger, Jeanette Scheible, Thomas Seufferlein, Peter Schirmacher, Berger, Thilo Hackert, Alexander Kleger

    Published 2025
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  19. 19
    Neutralizing antibody response against the B.1.617.2 (delta) and the B.1.1.529 (omicron) variants after a third mRNA SARS-CoV-2 vaccine dose in kidney transplant recipients

    Neutralizing antibody response against the B.1.617.2 (delta) and the B.1.1.529 (omicron) variants after a third mRNA SARS-CoV-2 vaccine dose in kidney transplant recipients by Louise Benning, Christian Morath, Marie Bartenschlager, Heeyoung Kim, Marvin Reineke, Jörg Beimler, Mirabel Buylaert, Christian Nußhag, Florian Kälble, Paula Reichel, Maximilian Töllner, Matthias Schaier, Katrin Klein, Vladimı́r Beneš, Tobias Rausch, Susanne Rieger, Maximilian Stich, Burkhard Tönshoff, Niklas Weidner, Paul Schnitzler, Martin Zeier, Caner Süsal, Thuong Hien Tran, Ralf Bartenschlager, Claudius Speer

    Published 2022
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  20. 20
    Functional analysis of structural variants in single cells using Strand-seq

    Functional analysis of structural variants in single cells using Strand-seq by Hyobin Jeong, Karen Grimes, Kerstin K. Rauwolf, Peter‐Martin Bruch, Tobias Rausch, Patrick Hasenfeld, Eva Benito, Tobias Roider, Radhakrishnan Sabarinathan, David Porubský, Sophie A. Herbst, Büşra Erarslan-Uysal, Johann-Christoph Jann, Tobias Marschall, Daniel Nowak, Jean‐Pierre Bourquin, Andreas E. Kulozik, Sascha Dietrich, Beat Bornhäuser, Ashley D. Sanders, Jan O. Korbel

    Published 2022
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