Search Results - Tobias Marschall

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  1. 1
    Efficient exact motif discovery

    Efficient exact motif discovery by Tobias Marschall, Sven Rahmann

    Published 2009
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  2. 2
    GraphAligner: rapid and versatile sequence-to-graph alignment

    GraphAligner: rapid and versatile sequence-to-graph alignment by Mikko Rautiainen, Tobias Marschall

    Published 2020
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  3. 3
    MBG: Minimizer-based sparse de Bruijn Graph construction

    MBG: Minimizer-based sparse de Bruijn Graph construction by Mikko Rautiainen, Tobias Marschall

    Published 2021
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  4. 4
    MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels

    MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels by Tobias Marschall, Iman Hajirasouliha, Alexander Schönhuth

    Published 2013
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  5. 5
    Bit-parallel sequence-to-graph alignment

    Bit-parallel sequence-to-graph alignment by Mikko Rautiainen, Veli Mäkinen, Tobias Marschall

    Published 2019
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  6. 6
    Read-Based Phasing and Analysis of Phased Variants with WhatsHap

    Read-Based Phasing and Analysis of Phased Variants with WhatsHap by Marcel Martin, Peter Ebert, Tobias Marschall

    Published 2022
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  7. 7
    Haplotype-aware diplotyping from noisy long reads

    Haplotype-aware diplotyping from noisy long reads by Jana Ebler, Marina Haukness, Trevor Pesout, Tobias Marschall, Benedict Paten

    Published 2019
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  8. 8
    Viral Quasispecies Assembly via Maximal Clique Enumeration

    Viral Quasispecies Assembly via Maximal Clique Enumeration by Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel

    Published 2014
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  9. 9
    Discovering motifs that induce sequencing errors

    Discovering motifs that induce sequencing errors by Manuel Allhoff, Alexander Schönhuth, Marcel Martin, Ivan G. Costa, Sven Rahmann, Tobias Marschall

    Published 2013
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  10. 10
    A graph-based approach to diploid genome assembly

    A graph-based approach to diploid genome assembly by Shilpa Garg, Mikko Rautiainen, Adam M. Novak, Erik Garrison, Richard Durbin, Tobias Marschall

    Published 2018
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  11. 11
    CLEVER: clique-enumerating variant finder

    CLEVER: clique-enumerating variant finder by Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth

    Published 2012
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  12. 12
    W<scp>hats</scp>H<scp>ap</scp>: Weighted Haplotype Assembly for Future-Generation Sequencing Reads

    W<scp>hats</scp>H<scp>ap</scp>: Weighted Haplotype Assembly for Future-Generation Sequencing Reads by Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth

    Published 2015
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  13. 13
    Dense and accurate whole-chromosome haplotyping of individual genomes

    Dense and accurate whole-chromosome haplotyping of individual genomes by David Porubský, Shilpa Garg, Ashley D. Sanders, Jan O. Korbel, Victor Guryev, Peter M. Lansdorp, Tobias Marschall

    Published 2017
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  14. 14
    WhatsHap: fast and accurate read-based phasing

    WhatsHap: fast and accurate read-based phasing by Marcel Martin, Murray Patterson, Shilpa Garg, Sarah O. Fischer, Nadia Pisanti, Gunnar W. Klau, Alexander Schöenhuth, Tobias Marschall

    Published 2016
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  15. 15
    Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus

    Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus by Glenn Hickey, Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao, Tobias Marschall, Heng Li, Benedict Paten

    Published 2022
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  16. 16
    Haplotype threading: accurate polyploid phasing from long reads

    Haplotype threading: accurate polyploid phasing from long reads by Sven Schrinner, Rebecca Serra Mari, Jana Ebler, Mikko Rautiainen, Lancelot Seillier, Julia J. Reimer, Björn Usadel, Tobias Marschall, Gunnar W. Klau

    Published 2020
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  17. 17
    Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma

    Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma by Johannes H. Schulte, Tobias Marschall, Marcel Martin, Philip Rosenstiel, Pieter Mestdagh, Stefanie Schlierf, Theresa Thor, Jo Vandesompele, Angelika Eggert, Stefan Schreiber, Sven Rahmann, Alexander Schramm

    Published 2010
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  18. 18
    SVision: a deep learning approach to resolve complex structural variants

    SVision: a deep learning approach to resolve complex structural variants by Jiadong Lin, Songbo Wang, Peter A. Audano, Deyu Meng, Jacob I. Flores, Walter A. Kosters, Xiaofei Yang, Peng Jia, Tobias Marschall, Christine R. Beck, Kai Ye

    Published 2022
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  19. 19
    Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall

    Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall by William T. Harvey, Peter Ebert, Jana Ebler, Peter A. Audano, Katherine M. Munson, Kendra Hoekzema, David Porubský, Christine R. Beck, Tobias Marschall, Kiran Garimella, Evan E. Eichler

    Published 2023
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  20. 20
    Inversion polymorphism in a complete human genome assembly

    Inversion polymorphism in a complete human genome assembly by David Porubský, William T. Harvey, Allison N. Rozanski, Jana Ebler, Wolfram Höps, Hufsah Ashraf, Patrick Hasenfeld, Benedict Paten, Ashley D. Sanders, Tobias Marschall, Jan O. Korbel, Evan E. Eichler

    Published 2023
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