Search Results - Tiago C. Silva

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  1. 1
    High-resolution melting for detecting KRAS mutations in colorectal cancer

    High-resolution melting for detecting KRAS mutations in colorectal cancer by Raelson Rodrigues Miranda, Tiago C. Silva, Nora Manoukian Forones

    Published 2019
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  2. 2
    <i>HiCAGE</i> : an R package for large-scale annotation and visualization of 3C-based genomic data

    <i>HiCAGE</i> : an R package for large-scale annotation and visualization of 3C-based genomic data by Michael J. Workman, Tiago C. Silva, Simon G. Coetzee, Dennis J. Hazelett

    Published 2018
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  3. 3
    UM171 Regulates the Hematopoietic Differentiation of Human Acquired Aplastic Anemia-Derived Induced Pluripotent Stem Cells

    UM171 Regulates the Hematopoietic Differentiation of Human Acquired Aplastic Anemia-Derived Induced Pluripotent Stem Cells by Tellechea Maria Florencia, Flávia S. Donaires, Tiago C. Silva, Lílian Figueiredo Moreira, Yordanka Armenteros, Rodrigo T. Calado

    Published 2019
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  4. 4
    TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

    TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages by Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Fulvio D’Angelo, Gianluca Bontempi, Michele Ceccarelli, Houtan Noushmehr

    Published 2016
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  5. 5
    TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

    TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages by Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Fulvio D’Angelo, Gianluca Bontempi, Michele Ceccarelli, Houtan Noushmehr

    Published 2016
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  6. 6
    TCGAbiolinksGUI: A graphical user interface to analyze GDC cancer molecular and clinical data

    TCGAbiolinksGUI: A graphical user interface to analyze GDC cancer molecular and clinical data by Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Gianluca Bontempi, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr

    Published 2017
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  7. 7
    Analyses of cancer data in the Genomic Data Commons Data Portal with new functionalities in the TCGAbiolinks R/Bioconductor package

    Analyses of cancer data in the Genomic Data Commons Data Portal with new functionalities in the TCGAbiolinks R/Bioconductor package by Mohamed Mounir, Tiago C. Silva, Marta Lucchetta, Catharina Olsen, Gianluca Bontempi, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo

    Published 2018
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  8. 8
    New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx

    New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx by Mohamed Mounir, Marta Lucchetta, Tiago C. Silva, Catharina Olsen, Gianluca Bontempi, Xi Chen, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo

    Published 2019
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  9. 9
    TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data

    TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data by Tiago C. Silva, Antonio Colaprico, Catharina Olsen, Tathiane M. Malta, Gianluca Bontempi, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr

    Published 2018
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  10. 10
    SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data

    SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data by Claudia Cava, Antonio Colaprico, Gloria Bertoli, Alex Graudenzi, Tiago C. Silva, Catharina Olsen, Houtan Noushmehr, Gianluca Bontempi, Giancarlo Mauri, Isabella Castiglioni

    Published 2017
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  11. 11
    ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles

    ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles by Tiago C. Silva, Simon G. Coetzee, Nicole Gull, Lijing Yao, Dennis J. Hazelett, Houtan Noushmehr, De‐Chen Lin, Benjamin P. Berman

    Published 2018
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  12. 12
    Sex-specific DNA methylation differences in Alzheimer’s disease pathology

    Sex-specific DNA methylation differences in Alzheimer’s disease pathology by Lanyu Zhang, Juan I. Young, Lissette Gomez, Tiago C. Silva, Michael A. Schmidt, Jesse Cai, Xi Chen, Eden R. Martin, Lily Wang

    Published 2021
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  13. 13
    Cross-tissue analysis of blood and brain epigenome-wide association studies in Alzheimer’s disease

    Cross-tissue analysis of blood and brain epigenome-wide association studies in Alzheimer’s disease by Tiago C. Silva, Juan I. Young, Lanyu Zhang, Lissette Gomez, Michael A. Schmidt, Achintya Varma, X. Steven Chen, Eden R. Martin, Lily Wang

    Published 2022
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  14. 14
    Distinct sex-specific DNA methylation differences in Alzheimer’s disease

    Distinct sex-specific DNA methylation differences in Alzheimer’s disease by Tiago C. Silva, Wei Zhang, Juan I. Young, Lissette Gomez, Michael A. Schmidt, Achintya Varma, X. Steven Chen, Eden R. Martin, Lily Wang

    Published 2022
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  15. 15
    Glioma CpG island methylator phenotype (G-CIMP): biological and clinical implications

    Glioma CpG island methylator phenotype (G-CIMP): biological and clinical implications by Tathiane M. Malta, Camila Ferreira de Souza, Thaís S. Sabedot, Tiago C. Silva, Maritza S Mosella, Steven N. Kalkanis, James M. Snyder, Ana Valeria B. Castro, Houtan Noushmehr

    Published 2017
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  16. 16
    Epigenome-wide meta-analysis of DNA methylation differences in prefrontal cortex implicates the immune processes in Alzheimer’s disease

    Epigenome-wide meta-analysis of DNA methylation differences in prefrontal cortex implicates the immune processes in Alzheimer’s disease by Lanyu Zhang, Tiago C. Silva, Juan I. Young, Lissette Gomez, Michael A. Schmidt, Kara L. Hamilton‐Nelson, Brian W. Kunkle, Xi Chen, Eden R. Martin, Lily Wang

    Published 2020
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  17. 17
    Glioma CpG Island Methylator Phenotype (G-CIMP): Biological and Clinical Implications

    Glioma CpG Island Methylator Phenotype (G-CIMP): Biological and Clinical Implications by Tathiane M. Malta, Camila Ferreira de Souza, Thaís S. Sabedot, Tiago C. Silva, Maritza Queiroz Salas Mosella, Steven N. Kalkanis, James M. Snyder, Ana Valeria B. Castro, Houtan Noushmehr

    Published 2017
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  18. 18
    TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

    TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data by Antonio Colaprico, Tiago C. Silva, Catharina Olsen, Luciano Garofano, Claudia Cava, Davide Garolini, Thaís S. Sabedot, Tathiane M. Malta, Stefano Maria Pagnotta, Isabella Castiglioni, Michele Ceccarelli, Gianluca Bontempi, Houtan Noushmehr

    Published 2015
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  19. 19
    Moonlight: a tool for biological interpretation and driver genes discovery

    Moonlight: a tool for biological interpretation and driver genes discovery by Antonio Colaprico, Catharina Olsen, Claudia Cava, Thilde Terkelsen, Tiago C. Silva, Andrè Olsen, Laura Cantini, Gloria Bertoli, Andreï Zinovyev, Emmanuel Barillot, Isabella Castiglioni, Houtan Noushmehr, Elena Papaleo, Gianluca Bontempi

    Published 2018
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  20. 20
    GENAVi: a shiny web application for gene expression normalization, analysis and visualization

    GENAVi: a shiny web application for gene expression normalization, analysis and visualization by Alberto Luiz P. Reyes, Tiago C. Silva, Simon G. Coetzee, Jasmine Plummer, Brian Davis, Stephanie Chen, Dennis J. Hazelett, Kate Lawrenson, Benjamin P. Berman, Simon A. Gayther, Michelle R. Jones

    Published 2019
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