Search Results - Thomas Keane

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  1. 1
    MultiPhyl: a high-throughput phylogenomics webserver using distributed computing

    MultiPhyl: a high-throughput phylogenomics webserver using distributed computing by Thomas Keane, Thomas J. Naughton, James O. McInerney

    Published 2007
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  2. 2
    Next-generation sequencing of experimental mouse strains

    Next-generation sequencing of experimental mouse strains by Binnaz Yalcin, David J. Adams, Jonathan Flint, Thomas Keane

    Published 2012
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  3. 3
    Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly

    Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly by Kim Wong, Thomas Keane, James Stalker, David J. Adams

    Published 2010
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  4. 4
    Assessing the gene space in draft genomes

    Assessing the gene space in draft genomes by Genı́s Parra, Keith Bradnam, Zemin Ning, Thomas Keane, Ian Korf

    Published 2008
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  5. 5
    ABACAS: algorithm-based automatic contiguation of assembled sequences

    ABACAS: algorithm-based automatic contiguation of assembled sequences by Samuel Assefa, Thomas Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman

    Published 2009
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  6. 6
    Similarities and differences in patterns of germline mutation between mice and humans

    Similarities and differences in patterns of germline mutation between mice and humans by Sarah Lindsay, Raheleh Rahbari, Joanna Kaplanis, Thomas Keane, Matthew E. Hurles

    Published 2019
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  7. 7
    Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

    Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified by Thomas Keane, Christopher J. Creevey, Melissa M. Pentony, Thomas J. Naughton, James O Mclnerney

    Published 2006
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  8. 8
    Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations

    Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations by Anthony Doran, Kim Wong, Jonathan Flint, David J. Adams, Kent W. Hunter, Thomas Keane

    Published 2016
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  9. 9
    Genomic and Proteomic Dissection of the Ubiquitous Plant Pathogen, <i>Armillaria mellea</i>: Toward a New Infection Model System

    Genomic and Proteomic Dissection of the Ubiquitous Plant Pathogen, <i>Armillaria mellea</i>: Toward a New Infection Model System by Cassandra Collins, Thomas Keane, Daniel J. Turner, Grainne O’Keeffe, David A. Fitzpatrick, Seán Doyle

    Published 2013
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  10. 10
    The fine-scale architecture of structural variants in 17 mouse genomes

    The fine-scale architecture of structural variants in 17 mouse genomes by Binnaz Yalcin, Kim Wong, Amarjit Bhomra, Martin Goodson, Thomas Keane, David J. Adams, Jonathan Flint

    Published 2012
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  11. 11
    Off-target mutations are rare in Cas9-modified mice

    Off-target mutations are rare in Cas9-modified mice by Vivek Iyer, Bin Shen, Zhi‐Gang She, Alex Hodgkins, Thomas Keane, Xingxu Huang, William C. Skarnes

    Published 2015
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  12. 12
    HTSlib: C library for reading/writing high-throughput sequencing data

    HTSlib: C library for reading/writing high-throughput sequencing data by James Bonfield, John Marshall, Petr Danecek, Heng Li, Valeriu Ohan, Andrew Whitwham, Thomas Keane, Robert M. Davies

    Published 2021
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  13. 13
    Sequencing and characterization of the FVB/NJ mouse genome

    Sequencing and characterization of the FVB/NJ mouse genome by Kim Wong, Suzannah Bumpstead, Louise van der Weyden, Laura G. Reinholdt, Laurens Wilming, David J. Adams, Thomas Keane

    Published 2012
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  14. 14
    RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus

    RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus by Grainne O’Keeffe, Stephen Hammel, Rebecca A. Owens, Thomas Keane, David A. Fitzpatrick, Gary W. Jones, Seán Doyle

    Published 2014
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  15. 15
    Contributions of Protein-Coding and Regulatory Change to Adaptive Molecular Evolution in Murid Rodents

    Contributions of Protein-Coding and Regulatory Change to Adaptive Molecular Evolution in Murid Rodents by Daniel L. Halligan, Athanasios Kousathanas, Rob W. Ness, Bettina Harr, Lél Eöry, Thomas Keane, David J. Adams, Peter D. Keightley

    Published 2013
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  16. 16
    <i>Plasmodium falciparum var</i> gene expression is modified by host immunity

    <i>Plasmodium falciparum var</i> gene expression is modified by host immunity by George M. Warimwe, Thomas Keane, Greg Fegan, Jennifer Musyoki, Charles R. Newton, Arnab Pain, Matthew Berriman, Kevin Marsh, Peter C. Bull

    Published 2009
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  17. 17
    Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells

    Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells by Josep V. Forment, Mareike Herzog, Julia Coates, Tomasz Konopka, Bianca V. Gapp, Sebastian Nijman, David J. Adams, Thomas Keane, Stephen P. Jackson

    Published 2016
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  18. 18
    Twelve years of SAMtools and BCFtools

    Twelve years of SAMtools and BCFtools by Petr Danecek, James Bonfield, Jennifer Liddle, John Marshall, Valeriu Ohan, Martin Pollard, Andrew Whitwham, Thomas Keane, Shane McCarthy, Robert M. Davies, Heng Li

    Published 2021
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  19. 19
    Chromosome assembly of large and complex genomes using multiple references

    Chromosome assembly of large and complex genomes using multiple references by Mikhail Kolmogorov, Joel Armstrong, Brian J. Raney, Ian Streeter, Matthew Dunn, Fengtang Yang, Duncan T. Odom, Paul Flicek, Thomas Keane, David Thybert, Benedict Paten, Son Pham

    Published 2018
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  20. 20
    High levels of RNA-editing site conservation amongst 15 laboratory mouse strains

    High levels of RNA-editing site conservation amongst 15 laboratory mouse strains by Petr Danecek, Christoffer Nellåker, Rebecca E. McIntyre, Jorge E. Buendia-Buendia, Suzannah Bumpstead, Chris P. Ponting, Jonathan Flint, Richard Durbin, Thomas Keane, David J. Adams

    Published 2012
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