Search Results - Thomas D. Otto

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  1. 1
    Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

    Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps by Isheng Jason Tsai, Thomas D. Otto, Matthew Berriman

    Published 2010
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  2. 2
    RATT: Rapid Annotation Transfer Tool

    RATT: Rapid Annotation Transfer Tool by Thomas D. Otto, G. Dillon, Wim S. Degrave, Matthew Berriman

    Published 2011
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  3. 3
    Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

    Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology by Thomas D. Otto, Mandy Sanders, Matthew Berriman, Chris Newbold

    Published 2010
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  4. 4
    A comprehensive evaluation of assembly scaffolding tools

    A comprehensive evaluation of assembly scaffolding tools by Martin Hunt, Chris Newbold, Matthew Berriman, Thomas D. Otto

    Published 2014
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  5. 5
    The PDTIS Bioinformatics Platform: From Sequence to Function

    The PDTIS Bioinformatics Platform: From Sequence to Function by Thomas D. Otto, Marcos Catanho, Wim Degrave, Antônio Basílio de Miranda

    Published 2007
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  6. 6
    A plataforma PDTIS de bioinformática: da seqüência à função

    A plataforma PDTIS de bioinformática: da seqüência à função by Thomas D. Otto, Marcos Catanho, Wim Degrave, Antônio Basílio de Miranda

    Published 2007
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  7. 7
    BamView: viewing mapped read alignment data in the context of the reference sequence

    BamView: viewing mapped read alignment data in the context of the reference sequence by Tim Carver, Ulrike Böhme, Thomas D. Otto, Julian Parkhill, Matthew Berriman

    Published 2010
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  8. 8
    ABACAS: algorithm-based automatic contiguation of assembled sequences

    ABACAS: algorithm-based automatic contiguation of assembled sequences by Samuel Assefa, Thomas Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman

    Published 2009
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  9. 9
    Progression of the canonical reference malaria parasite genome from 2002–2019

    Progression of the canonical reference malaria parasite genome from 2002–2019 by Ulrike Böhme, Thomas D. Otto, Mandy Sanders, Chris Newbold, Matthew Berriman

    Published 2019
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  10. 10
    Progression of the canonical reference malaria parasite genome from 2002–2019

    Progression of the canonical reference malaria parasite genome from 2002–2019 by Ulrike Böhme, Thomas D. Otto, Mandy Sanders, Chris Newbold, Matthew Berriman

    Published 2019
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  11. 11
    AnEnPi: identification and annotation of analogous enzymes

    AnEnPi: identification and annotation of analogous enzymes by Thomas D. Otto, Ana Carolina Ramos Guimarães, Wim Degrave, Antônio Basílio de Miranda

    Published 2008
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  12. 12
    REAPR: a universal tool for genome assembly evaluation

    REAPR: a universal tool for genome assembly evaluation by Martin Hunt, Taisei Kikuchi, Mandy Sanders, Chris Newbold, Matthew Berriman, Thomas D. Otto

    Published 2013
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  13. 13
    Single-cell transcriptomic analysis of bloodstream Trypanosoma brucei reconstructs cell cycle progression and developmental quorum sensing

    Single-cell transcriptomic analysis of bloodstream Trypanosoma brucei reconstructs cell cycle progression and developmental quorum sensing by Emma M. Briggs, Federico Rojas, Richard McCulloch, Keith R. Matthews, Thomas D. Otto

    Published 2021
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  14. 14
    A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

    A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs by Martin Swain, Isheng Jason Tsai, Samual A Assefa, Chris Newbold, Matthew Berriman, Thomas D. Otto

    Published 2012
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  15. 15
    BamView: visualizing and interpretation of next-generation sequencing read alignments

    BamView: visualizing and interpretation of next-generation sequencing read alignments by T. R. Carver, Simon R. Harris, Thomas D. Otto, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan

    Published 2012
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  16. 16
    In silico reconstruction of the amino acid metabolic pathways of Trypanosoma cruzi

    In silico reconstruction of the amino acid metabolic pathways of Trypanosoma cruzi by Ana Carolina Ramos Guimarães, Thomas D. Otto, Márcio Alves‐Ferreira, Antônio Basílio de Miranda, Wim Degrave

    Published 2008
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  17. 17
    ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)

    ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS) by Thomas D. Otto, Leonardo Henrique Ferreira Gomes, Marcelo Alves-Ferreira, Antônio Basílio de Miranda, Wim Degrave

    Published 2008
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  18. 18
    Circlator: automated circularization of genome assemblies using long sequencing reads

    Circlator: automated circularization of genome assemblies using long sequencing reads by Martin Hunt, Nishadi De Silva, Thomas D. Otto, Julian Parkhill, Jacqueline A. Keane, Simon R. Harris

    Published 2015
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  19. 19
    Evolutionary analysis of the most polymorphic gene family in falciparum malaria

    Evolutionary analysis of the most polymorphic gene family in falciparum malaria by Thomas D. Otto, Sammy A. Assefa, Ulrike Böhme, Mandy Sanders, Dominic Kwiatkowski, Matthew Berriman, Chris Newbold

    Published 2019
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  20. 20
    Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis

    Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis by Antoine Claessens, William L. Hamilton, Mihir Kekre, Thomas D. Otto, Adnan Faizullabhoy, Julian C. Rayner, Dominic Kwiatkowski

    Published 2014
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