Search Results - Susan Holmes

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  1. 1
    Error Distribution for Gene Expression Data

    Error Distribution for Gene Expression Data by Elizabeth Purdom, Susan Holmes

    Published 2005
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  2. 2
    Computational Tools for Evaluating Phylogenetic and Hierarchical Clustering Trees

    Computational Tools for Evaluating Phylogenetic and Hierarchical Clustering Trees by John Chakerian, Susan Holmes

    Published 2012
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  3. 3
    Latent variable modeling for the microbiome

    Latent variable modeling for the microbiome by Kris Sankaran, Susan Holmes

    Published 2018
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  4. 4
    Ten quick tips for effective dimensionality reduction

    Ten quick tips for effective dimensionality reduction by Lan Huong Nguyen, Susan Holmes

    Published 2019
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  5. 5
    Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

    Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible by Paul J. McMurdie, Susan Holmes

    Published 2014
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  6. 6
    Phyloseq: a bioconductor package for handling and analysis of high-throughput phylogenetic sequence data.

    Phyloseq: a bioconductor package for handling and analysis of high-throughput phylogenetic sequence data. by Paul J. McMurdie, Susan Holmes

    Published 2012
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  7. 7
    Bootstrap confidence levels for phylogenetic trees.

    Bootstrap confidence levels for phylogenetic trees. by B. Efron, Elizabeth Halloran, Susan Holmes

    Published 1996
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  8. 8
    Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

    Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking by Paul J. McMurdie, Susan Holmes

    Published 2014
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  9. 9
    Bootstrap confidence levels for phylogenetic trees

    Bootstrap confidence levels for phylogenetic trees by Bradley Efron, Elizabeth Halloran, Susan Holmes

    Published 1996
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  10. 10
    PHYLOSEQ: A BIOCONDUCTOR PACKAGE FOR HANDLING AND ANALYSIS OF HIGH-THROUGHPUT PHYLOGENETIC SEQUENCE DATA

    PHYLOSEQ: A BIOCONDUCTOR PACKAGE FOR HANDLING AND ANALYSIS OF HIGH-THROUGHPUT PHYLOGENETIC SEQUENCE DATA by Paul J. McMurdie, Susan Holmes

    Published 2011
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  11. 11
    The short-term regulation of foraging in harvester ants

    The short-term regulation of foraging in harvester ants by Deborah M. Gordon, Susan Holmes, Şerban Nacu

    Published 2007
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  12. 12
    Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle

    Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle by Anastassia Gorvitovskaia, Susan Holmes, Susan M. Huse

    Published 2016
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  13. 13
    Nest site and weather affect the personality of harvester ant colonies

    Nest site and weather affect the personality of harvester ant colonies by Noa Pinter‐Wollman, Deborah M. Gordon, Susan Holmes

    Published 2012
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  14. 14
    Denoising PCR-amplified metagenome data

    Denoising PCR-amplified metagenome data by Michael Rosen, Benjamin J. Callahan, Daniel S. Fisher, Susan Holmes

    Published 2012
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  15. 15
    Colony variation in the collective regulation of foraging by harvester ants

    Colony variation in the collective regulation of foraging by harvester ants by Deborah M. Gordon, Adam Guetz, Michael Greene, Susan Holmes

    Published 2011
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  16. 16
    Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

    Exact sequence variants should replace operational taxonomic units in marker-gene data analysis by Benjamin J. Callahan, Paul J. McMurdie, Susan Holmes

    Published 2017
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  17. 17
    Exact sequence variants should replace operational taxonomic units in marker gene data analysis

    Exact sequence variants should replace operational taxonomic units in marker gene data analysis by Benjamin J. Callahan, Paul J. McMurdie, Susan Holmes

    Published 2017
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  18. 18
    HIV-1 Subtype B Protease and Reverse Transcriptase Amino Acid Covariation

    HIV-1 Subtype B Protease and Reverse Transcriptase Amino Acid Covariation by Soo‐Yon Rhee, Tommy F. Liu, Susan Holmes, Robert W. Shafer

    Published 2007
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  19. 19
    Gene expression network analysis and applications to immunology

    Gene expression network analysis and applications to immunology by Şerban Nacu, Rebecca J. Critchley-Thorne, Peter P. Lee, Susan Holmes

    Published 2007
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  20. 20
    Constrained patterns of covariation and clustering of HIV-1 non-nucleoside reverse transcriptase inhibitor resistance mutations

    Constrained patterns of covariation and clustering of HIV-1 non-nucleoside reverse transcriptase inhibitor resistance mutations by Elizabeth C. Reuman, Soo‐Yon Rhee, Susan Holmes, Robert W. Shafer

    Published 2010
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