Search Results - Suganthi Balasubramanian

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  1. 1
    A comprehensive catalog of predicted functional upstream open reading frames in humans

    A comprehensive catalog of predicted functional upstream open reading frames in humans by Patrick D. McGillivray, Russell Ault, Mayur Pawashe, Robert R. Kitchen, Suganthi Balasubramanian, Mark Gerstein

    Published 2018
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  2. 2
    Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22

    Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22 by Paul M. Harrison, Hédi Hegyi, Suganthi Balasubramanian, Nicholas M. Luscombe, Paul Bertone, Nathaniel Echols, Ted Johnson, Mark Gerstein

    Published 2002
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  3. 3
    What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties

    What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties by Mary Munson, Suganthi Balasubramanian, Karen G. Fleming, Athena D. Nagi, Ronan O’Brien, Julian M. Sturtevant, Lynne Regan

    Published 1996
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  4. 4
    Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

    Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes by Suganthi Balasubramanian, Deyou Zheng, Yuen-Jong Liu, Gang Fang, Adam Frankish, Nicholas Carriero, R. Robilotto, Philip Cayting, Mark Gerstein

    Published 2009
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  5. 5
    VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment

    VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment by Lukas Habegger, Suganthi Balasubramanian, David Z. Chen, Ekta Khurana, Andrea Sboner, Arif Harmanci, Joel Rozowsky, Declan Clarke, M Snyder, Mark Gerstein

    Published 2012
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  6. 6
    Using ALoFT to determine the impact of putative loss-of-function variants in protein-coding genes

    Using ALoFT to determine the impact of putative loss-of-function variants in protein-coding genes by Suganthi Balasubramanian, Yao Fu, Mayur Pawashe, Patrick D. McGillivray, Mike Jin, Jeremy Liu, Konrad J. Karczewski, Daniel G. MacArthur, Mark Gerstein

    Published 2017
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  7. 7
    The GENCODE pseudogene resource

    The GENCODE pseudogene resource by Baikang Pei, Cristina Sisu, Adam Frankish, Cédric Howald, Lukas Habegger, Xinmeng Jasmine Mu, Rachel Harte, Suganthi Balasubramanian, Andrea Tanzer, Mark Diekhans, Alexandre Reymond, Tim Hubbard, Jennifer Harrow, Mark Gerstein

    Published 2012
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  8. 8
    Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts

    Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts by Batbileg Bor, Andrew J. Collins, Pallavi P. Murugkar, Suganthi Balasubramanian, Thao T. To, Erik L. Hendrickson, Joseph K. Bedree, Felicitas B. Bidlack, Christopher D. Johnston, Wenyuan Shi, Jeffrey S. McLean, Xuesong He, Floyd E. Dewhirst

    Published 2020
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  9. 9
    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression by Dmitri D. Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie Davis, Pablo Prieto, Alexander Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei Hoon See, Meagan Fastuca, Jörg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, M Beer, Cédric Notredame, Roderic Guigó, T Gingeras

    Published 2015
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  10. 10
    Profiling and Leveraging Relatedness in a Precision Medicine Cohort of 92,455 Exomes

    Profiling and Leveraging Relatedness in a Precision Medicine Cohort of 92,455 Exomes by Jeffrey Staples, Evan K. Maxwell, Nehal Gosalia, Claudia Gonzaga‐Jauregui, Christopher W. Snyder, Alicia Hawes, John S. Penn, Ricardo H. Ulloa, Xiaodong Bai, Alexander Lopez, Cristopher V. Van Hout, Colm O’Dushlaine, Tanya M. Teslovich, Shane McCarthy, Suganthi Balasubramanian, H. Lester Kirchner, Joseph B. Leader, Michael F. Murray, David H. Ledbetter, Alan R. Shuldiner, George D. Yancoupolos, Frederick E. Dewey, David J. Carey, John D. Overton, Aris Baras, Lukas Habegger, Jeffrey G. Reid

    Published 2018
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  11. 11
    Advancing Human Genetics Research and Drug Discovery through Exome Sequencing of the UK Biobank

    Advancing Human Genetics Research and Drug Discovery through Exome Sequencing of the UK Biobank by Joseph D. Szustakowski, Suganthi Balasubramanian, Ariella Sasson, Shareef Khalid, Paola G. Bronson, Erika Kvikstad, Emily Wong, Daren Liu, J. Wade Davis, Carolina Haefliger, A. Katrina Loomis, Rajesh Mikkilineni, Hyun Ji Noh, Samir Wadhawan, Xiaodong Bai, Alicia Hawes, Olga Krasheninina, Ricardo H. Ulloa, Alex Lopez, Erin N. Smith, Jeff Waring, Christopher D. Whelan, Ellen Tsai, John D. Overton, William Salerno, Howard J. Jacob, Sándor Szalma, Heiko Runz, Greg Hinkle, Paul Nioi, Slavé Petrovski, Melissa Miller, Aris Baras, Lyndon J. Mitnaul, Jeffrey G. Reid

    Published 2020
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  12. 12
    GENCODE: The reference human genome annotation for The ENCODE Project

    GENCODE: The reference human genome annotation for The ENCODE Project by Jennifer Harrow, Adam Frankish, José M. González, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Bronwen Aken, Daniel Barrell, Amonida Zadissa, Stephen M. J. Searle, If Barnes, Alexandra Bignell, Veronika Boychenko, Toby Hunt, Mike Kay, Gaurab Mukherjee, Jeena Rajan, Gloria Despacio-Reyes, Gary Saunders, Charles A. Steward, Rachel Harte, Michael Lin, Cédric Howald, Andrea Tanzer, Thomas Derrien, Jacqueline Chrast, Nathalie Walters, Suganthi Balasubramanian, Baikang Pei, Michael L. Tress, José Manuel Rodrı́guez, Iakes Ezkurdia, Jeltje van Baren, Michael R. Brent, David Haussler, Manolis Kellis, Alfonso Valencia, Alexandre Reymond, Mark Gerstein, Roderic Guigó, Tim Hubbard

    Published 2012
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  13. 13
    Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes

    Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes by Rui Chen, George I. Mias, Jennifer Li‐Pook‐Than, Lihua Jiang, Hugo Y. K. Lam, Rong Chen, Elana Miriami, Konrad J. Karczewski, Manoj Hariharan, Frederick E. Dewey, Yong Cheng, Michael J. Clark, Hogune Im, Lukas Habegger, Suganthi Balasubramanian, Maeve O’Huallachain, Joel T. Dudley, Sara Hillenmeyer, Rajini Haraksingh, Donald Sharon, Ghia Euskirchen, Phil Lacroute, Keith Bettinger, Alan P. Boyle, Maya Kasowski, Fabian Grubert, Scott Seki, Marco Garcia, Michelle Whirl‐Carrillo, Mercedes Gallardo, Marı́a A. Blasco, Peter L. Greenberg, Phyllis J. Snyder, Teri E. Klein, Russ B. Altman, Atul J. Butte, Euan A. Ashley, Mark Gerstein, Kari C. Nadeau, Hua Tang, M Snyder

    Published 2012
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  14. 14
    Exome sequencing and analysis of 454,787 UK Biobank participants

    Exome sequencing and analysis of 454,787 UK Biobank participants by Joshua Backman, Alexander Li, Anthony Marcketta, Dylan Sun, Joelle Mbatchou, Michael D. Kessler, Christian Benner, Daren Liu, Adam E. Locke, Suganthi Balasubramanian, Ashish Yadav, Nilanjana Banerjee, Christopher E. Gillies, Amy Damask, Simon Liu, Xiaodong Bai, Alicia Hawes, Evan K. Maxwell, Lauren Gurski, Kyoko Watanabe, Jack A. Kosmicki, Veera M. Rajagopal, Jason Mighty, Marcus B. Jones, Lyndon J. Mitnaul, Eli A. Stahl, Giovanni Coppola, Eric Jorgenson, Lukas Habegger, William Salerno, Alan R. Shuldiner, Luca A. Lotta, John D. Overton, Michael Cantor, Jeffrey G. Reid, George D. Yancopoulos, Hyun Min Kang, Jonathan Marchini, Aris Baras, Gonçalo R. Abecasis, Manuel A. R. Ferreira

    Published 2021
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  15. 15
    Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics

    Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics by Ekta Khurana, Yao Fu, Vincenza Colonna, Xinmeng Jasmine Mu, Hyun Min Kang, Tuuli Lappalainen, Andrea Sboner, Lucas Lochovsky, Jieming Chen, Arif Harmanci, Jishnu Das, Alexej Abyzov, Suganthi Balasubramanian, Kathryn Beal, Dimple Chakravarty, Daniel Challis, Yuan Chen, Declan Clarke, Laura Clarke, Fiona Cunningham, Uday S. Evani, Paul Flicek, Robert Fragoza, Erik Garrison, Richard A. Gibbs, Zeynep H. Gümüş, Javier Herrero, Naoki Kitabayashi, Yong Kong, Kasper Lage, Vaja Liluashvili, Steven M. Lipkin, Daniel G. MacArthur, Gábor Marth, Donna M. Muzny, Tune H. Pers, Graham R. S. Ritchie, Jeffrey Rosenfeld, Cristina Sisu, Xiaomu Wei, Michael Wilson, Yali Xue, Fuli Yu, Emmanouil T. Dermitzakis, Haiyuan Yu, Mark A. Rubin, Chris Tyler‐Smith, Mark Gerstein

    Published 2013
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  16. 16
    A deep catalog of protein-coding variation in 985,830 individuals

    A deep catalog of protein-coding variation in 985,830 individuals by Kathie Sun, Xiaodong Bai, Siying Chen, Suying Bao, Manav Kapoor, Chuanyi Zhang, Joshua Backman, Tyler Joseph, Evan K. Maxwell, George Mitra, Alexander Gorovits, Adam J. Mansfield, Boris Boutkov, Sujit Gokhale, Lukas Habegger, Anthony Marcketta, Adam E. Locke, Michael D. Kessler, Deepika Sharma, Jeffrey Staples, Jonas Bovijn, Sahar Gelfman, Alessandro Di Gioia, Veera M. Rajagopal, Alexander Lopez, Jennifer Rico Varela, J Larracilla Alegre, Jaime Berúmen, Roberto Tapia‐Conyer, Pablo Kuri‐Morales, Jason Torres, Jonathan Emberson, Rory Collins, Michael Cantor, Timothy A. Thornton, Hyun Min Kang, John D. Overton, Alan R. Shuldiner, María Laura Cremona, Mona Nafde, Aris Baras, Gonçalo R. Abecasis, Jonathan Marchini, Jeffrey G. Reid, William Salerno, Suganthi Balasubramanian

    Published 2023
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  17. 17
    Polygenic Risk of Psychiatric Disorders Exhibits Cross-trait Associations in Electronic Health Record Data From European Ancestry Individuals

    Polygenic Risk of Psychiatric Disorders Exhibits Cross-trait Associations in Electronic Health Record Data From European Ancestry Individuals by Rachel L. Kember, Alison Merikangas, Shefali S. Verma, Anurag Verma, Renae Judy, Scott M. Damrauer, Marylyn D. Ritchie, Daniel J. Rader, Maja Bućan, Gonçalo R. Abecasis, Aris Baras, Michael Cantor, Giovanni Coppola, Aris N. Economides, Luca A. Lotta, John D. Overton, Jeffrey G. Reid, Alan R. Shuldiner, Christina Beechert, Caitlin Forsythe, Erin D. Fuller, Zhenhua Gu, Michael Lattari, Alexander Lopez, John D. Overton, Thomas D. Schleicher, Maria Sotiropoulos Padilla, Karina Toledo, Louis Widom, Sarah E. Wolf, Manasi Pradhan, Kia Manoochehri, Ricardo H. Ulloa, Xiaodong Bai, Suganthi Balasubramanian, Leland Barnard, Andrew Blumenfeld, Gisu Eom, Lukas Habegger, Young S. Hahn, Alicia Hawes, Shareef Khalid, Jeffrey G. Reid, Evan K. Maxwell, William Salerno, Jeffrey Staples, Ashish Yadav, Marcus B. Jones, Lyndon J. Mitnaul

    Published 2020
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  18. 18
    Germline Mutations in <i>CIDEB</i> and Protection against Liver Disease

    Germline Mutations in <i>CIDEB</i> and Protection against Liver Disease by Niek Verweij, Mary E. Haas, Jonas B. Nielsen, Olukayode Sosina, Minhee Kim, Parsa Akbari, Tanima De, George Hindy, Jonas Bovijn, Trikaldarshi Persaud, Lawrence Miloscio, Mary Germino, Lampros Panagis, Kyoko Watanabe, Joelle Mbatchou, Marcus B. Jones, Michelle G. LeBlanc, Suganthi Balasubramanian, Craig Lammert, Sofia Enhörning, Olle Melander, David J. Carey, Christopher D. Still, Tooraj Mirshahi, Daniel J. Rader, Prodromos Parasoglou, Johnathon R. Walls, John D. Overton, Jeffrey G. Reid, Aris N. Economides, Michael Cantor, Brian Zambrowicz, Andrew Murphy, Gonçalo R. Abecasis, Manuel A. R. Ferreira, Ēriks Šmagris, Viktoria Gusarova, Mark W. Sleeman, George D. Yancopoulos, Jonathan Marchini, Hyun Min Kang, Katia Karalis, Alan R. Shuldiner, Giusy Della Gatta, Adam E. Locke, Aris Baras, Luca A. Lotta

    Published 2022
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  19. 19
    A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

    A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes by Daniel G. MacArthur, Suganthi Balasubramanian, Adam Frankish, Ni Huang, James Morris, Klaudia Walter, Luke Jostins, Lukas Habegger, Joseph K. Pickrell, Stephen B. Montgomery, Cornelis A. Albers, Zhengdong D. Zhang, Donald F. Conrad, Gerton Lunter, Hancheng Zheng, Qasim Ayub, Mark A. DePristo, Eric Banks, Min Hu, Robert E. Handsaker, Jeffrey Rosenfeld, Menachem Fromer, Mike Jin, Xinmeng Jasmine Mu, Ekta Khurana, Kai Ye, Mike Kay, Gary Saunders, Marie‐Marthe Suner, Toby Hunt, If Barnes, Clara Amid, Denise Carvalho‐Silva, Alexandra Bignell, Catherine Snow, Bryndís Yngvadóttir, Suzannah Bumpstead, D.N. Cooper, Yali Xue, Irene Gallego Romero, Jun Wang, Yingrui Li, Richard A. Gibbs, Steven A. McCarroll, Emmanouil T. Dermitzakis, Jonathan K. Pritchard, Jeffrey C. Barrett, Jennifer Harrow, Matthew E. Hurles, Mark Gerstein, Chris Tyler‐Smith

    Published 2012
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  20. 20
    A Protein-Truncating<i>HSD17B13</i>Variant and Protection from Chronic Liver Disease

    A Protein-Truncating<i>HSD17B13</i>Variant and Protection from Chronic Liver Disease by Noura S. Abul‐Husn, Xiping Cheng, Alexander Li, Yurong Xin, Claudia Schurmann, Panayiotis E. Stevis, Yashu Liu, Julia Kozlitina, Stefan Stender, G. Craig Wood, Ann Stepanchick, Matthew Still, Shane McCarthy, Colm O’Dushlaine, Jonathan S. Packer, Suganthi Balasubramanian, Nehal Gosalia, David Esopi, Sun Y. Kim, Semanti Mukherjee, Alexander Lopez, Erin D. Fuller, John S. Penn, Xin Chu, Jonathan Z. Luo, Uyenlinh L. Mirshahi, David J. Carey, Christopher D. Still, Michael D. Feldman, Aeron Small, Scott M. Damrauer, Daniel J. Rader, Brian Zambrowicz, William C. Olson, Andrew Murphy, Ingrid B. Borecki, Alan R. Shuldiner, Jeffrey G. Reid, John D. Overton, George D. Yancopoulos, Helen H. Hobbs, Jonathan C. Cohen, Omri Gottesman, Tanya M. Teslovich, Aris Baras, Tooraj Mirshahi, Jesper Gromada, Frederick E. Dewey

    Published 2018
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