Search Results - Sudhakar, Padhmanand

MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome–Host Interactions by Andrighetti, Tahila, Bohar, Balazs, Lemke, Ney, Sudhakar, Padhmanand, Korcsmaros, Tamas

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Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions by Sudhakar, Padhmanand, Machiels, Kathleen, Verstockt, Bram, Korcsmaros, Tamas, Vermeire, Séverine

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What We Learned From Big Data for Autophagy Research by Jacomin, Anne-Claire, Gul, Lejla, Sudhakar, Padhmanand, Korcsmaros, Tamas, Nezis, Ioannis P.

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Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton by Sudhakar, Padhmanand, Reck, Michael, Wang, Wei, He, Feng Q, Dobler, Irene W, Zeng, An-Ping

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Erratum to: Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton by Sudhakar, Padhmanand, Reck, Michael, Wang, Wei, He, Feng Q, Wagner-Döbler, Irene, Zeng, An-Ping

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Big data in IBD: big progress for clinical practice by Seyed Tabib, Nasim Sadat, Madgwick, Matthew, Sudhakar, Padhmanand, Verstockt, Bram, Korcsmaros, Tamas, Vermeire, Séverine

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Understanding the Molecular Drivers of Disease Heterogeneity in Crohn’s Disease Using Multi-omic Data Integration and Network Analysis by Sudhakar, Padhmanand, Verstockt, Bram, Cremer, Jonathan, Verstockt, Sare, Sabino, João, Ferrante, Marc, Vermeire, Séverine

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ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins by Demeter, Amanda, Romero-Mulero, Mari Carmen, Csabai, Luca, Ölbei, Márton, Sudhakar, Padhmanand, Haerty, Wilfried, Korcsmáros, Tamás

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Integrated analysis of microbe-host interactions in Crohn’s disease reveals potential mechanisms of microbial proteins on host gene expression by Sudhakar, Padhmanand, Andrighetti, Tahila, Verstockt, Sare, Caenepeel, Clara, Ferrante, Marc, Sabino, João, Verstockt, Bram, Vermeire, Severine

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A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains by Song, Lifu, Sudhakar, Padhmanand, Wang, Wei, Conrads, Georg, Brock, Anke, Sun, Jibin, Wagner-Döbler, Irene, Zeng, An-Ping

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SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation by Métris, Aline, Sudhakar, Padhmanand, Fazekas, David, Demeter, Amanda, Ari, Eszter, Olbei, Marton, Branchu, Priscilla, Kingsley, Rob A., Baranyi, Jozsef, Korcsmáros, Tamas

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Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner that are altered in inf... by Gul, Lejla, Modos, Dezso, Fonseca, Sonia, Madgwick, Matthew, Thomas, John P., Sudhakar, Padhmanand, Booth, Catherine, Stentz, Régis, Carding, Simon R., Korcsmaros, Tamas

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Targeted interplay between bacterial pathogens and host autophagy by Sudhakar, Padhmanand, Jacomin, Anne-Claire, Hautefort, Isabelle, Samavedam, Siva, Fatemian, Koorosh, Ari, Eszter, Gul, Leila, Demeter, Amanda, Jones, Emily, Korcsmaros, Tamas, Nezis, Ioannis P.

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ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways by Treveil, Agatha, Bohar, Balazs, Sudhakar, Padhmanand, Gul, Lejla, Csabai, Luca, Olbei, Marton, Poletti, Martina, Madgwick, Matthew, Andrighetti, Tahila, Hautefort, Isabelle, Modos, Dezso, Korcsmaros, Tamas

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Microbiota, not host origin drives ex vivo intestinal epithelial responses by Arnauts, Kaline, Sudhakar, Padhmanand, Verstockt, Sare, Lapierre, Cynthia, Potche, Selina, Caenepeel, Clara, Verstockt, Bram, Raes, Jeroen, Vermeire, Séverine, Sabino, João, Verfaillie, Catherine, Ferrante, Marc

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Evolution of regulatory networks associated with traits under selection in cichlids by Mehta, Tarang K., Koch, Christopher, Nash, Will, Knaack, Sara A., Sudhakar, Padhmanand, Olbei, Marton, Bastkowski, Sarah, Penso-Dolfin, Luca, Korcsmaros, Tamas, Haerty, Wilfried, Roy, Sushmita, Di-Palma, Federica

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MDH1 and MPP7 regulate autophagy in pancreatic ductal adenocarcinoma by New, Maria, Van Acker, Tim, Sakamaki, Jun-ichi, Jiang, Ming, Saunders, Rebecca E., Long, Jaclyn, Wang, Victoria M.-Y., Behrens, Axel, Cerveira, Joana, Sudhakar, Padhmanand, Korcsmaros, Tamas, Jefferies, Harold B. J., Ryan, Kevin M., Howell, Michael, Tooze, Sharon A.

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A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis by Brooks-Warburton, Johanne, Modos, Dezso, Sudhakar, Padhmanand, Madgwick, Matthew, Thomas, John P., Bohar, Balazs, Fazekas, David, Zoufir, Azedine, Kapuy, Orsolya, Szalay-Beko, Mate, Verstockt, Bram, Hall, Lindsay J., Watson, Alastair, Tremelling, Mark, Parkes, Miles, Vermeire, Severine, Bender, Andreas, Carding, Simon R., Korcsmaros, Tamas

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Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy by Jones, Emily J., Matthews, Zoe J., Gul, Lejla, Sudhakar, Padhmanand, Treveil, Agatha, Divekar, Devina, Buck, Jasmine, Wrzesinski, Tomasz, Jefferson, Matthew, Armstrong, Stuart D., Hall, Lindsay J., Watson, Alastair J. M., Carding, Simon R., Haerty, Wilfried, Di Palma, Federica, Mayer, Ulrike, Powell, Penny P., Hautefort, Isabelle, Wileman, Tom, Korcsmaros, Tamas

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SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks by Csabai, Luca, Fazekas, Dávid, Kadlecsik, Tamás, Szalay-Bekő, Máté, Bohár, Balázs, Madgwick, Matthew, Módos, Dezső, Ölbei, Márton, Gul, Lejla, Sudhakar, Padhmanand, Kubisch, János, Oyeyemi, Oyebode James, Liska, Orsolya, Ari, Eszter, Hotzi, Bernadette, Billes, Viktor A, Molnár, Eszter, Földvári-Nagy, László, Csályi, Kitti, Demeter, Amanda, Pápai, Nóra, Koltai, Mihály, Varga, Máté, Lenti, Katalin, Farkas, Illés J, Türei, Dénes, Csermely, Péter, Vellai, Tibor, Korcsmáros, Tamás

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