Search Results - Subhajyoti De

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  1. 1
    DNA secondary structures and epigenetic determinants of cancer genome evolution

    DNA secondary structures and epigenetic determinants of cancer genome evolution by Subhajyoti De, Franziska Michor

    Published 2011
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  2. 2
    DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes

    DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes by Subhajyoti De, Franziska Michor

    Published 2011
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  3. 3
    Drivers of dynamic intratumor heterogeneity and phenotypic plasticity

    Drivers of dynamic intratumor heterogeneity and phenotypic plasticity by Antara Biswas, Subhajyoti De

    Published 2021
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  4. 4
    An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples

    An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples by Vinod Kumar Yadav, Subhajyoti De

    Published 2014
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  5. 5
    DNA replication timing and higher-order nuclear organization determine single-nucleotide substitution patterns in cancer genomes

    DNA replication timing and higher-order nuclear organization determine single-nucleotide substitution patterns in cancer genomes by Lin Liu, Subhajyoti De, Franziska Michor

    Published 2013
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  6. 6
    Revisiting the cancer microbiome using PRISM

    Revisiting the cancer microbiome using PRISM by Bassel Ghaddar, Martin J. Blaser, Subhajyoti De

    Published 2025
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  7. 7
    Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different.

    Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different. by Subhajyoti De, Krishnadev Oruganty, Narayanaswamy Srinivasan, Nambudiry Rekha

    Published 2005
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  8. 8
    Evolution of the cancer genome

    Evolution of the cancer genome by Ondřej Podlaha, Markus Riester, Subhajyoti De, Franziska Michor

    Published 2012
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  9. 9
    Cellular crowding imposes global constraints on the chemistry and evolution of proteomes

    Cellular crowding imposes global constraints on the chemistry and evolution of proteomes by Emmanuel D. Levy, Subhajyoti De, Sarah A. Teichmann

    Published 2012
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  10. 10
    The landscape of somatic mutations in protein coding genes in apparently benign human tissues carries signatures of relaxed purifying selection

    The landscape of somatic mutations in protein coding genes in apparently benign human tissues carries signatures of relaxed purifying selection by Vinod Kumar Yadav, James DeGregori, Subhajyoti De

    Published 2016
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  11. 11
    Understanding the role of phenotypic switching in cancer drug resistance

    Understanding the role of phenotypic switching in cancer drug resistance by Einar Bjarki Gunnarsson, Subhajyoti De, Kevin Leder, Jasmine Foo

    Published 2020
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  12. 12
    Plasma-Derived Cell-Free DNA as a Biomarker for Early Detection, Prognostication, and Personalized Treatment of Urothelial Carcinoma

    Plasma-Derived Cell-Free DNA as a Biomarker for Early Detection, Prognostication, and Personalized Treatment of Urothelial Carcinoma by Sophia Bhalla, Rachel Passarelli, Antara Biswas, Subhajyoti De, Saum Ghodoussipour

    Published 2024
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  13. 13
    Mutational signature SBS8 predominantly arises due to late replication errors in cancer

    Mutational signature SBS8 predominantly arises due to late replication errors in cancer by Vinod Kumar Singh, Arnav Rastogi, Xiaoju Hu, Yaqun Wang, Subhajyoti De

    Published 2020
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  14. 14
    Fast and accurate alignment of long bisulfite-seq reads

    Fast and accurate alignment of long bisulfite-seq reads by Brent S. Pedersen, Kenneth R. Eyring, Subhajyoti De, Ivana V. Yang, David A. Schwartz

    Published 2014
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  15. 15
    SomVarIUS: somatic variant identification from unpaired tissue samples

    SomVarIUS: somatic variant identification from unpaired tissue samples by Kyle Smith, Vinod Kumar Yadav, Shanshan Pei, Daniel A. Pollyea, Craig T. Jordan, Subhajyoti De

    Published 2015
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  16. 16
    Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. elegans

    Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. elegans by Katherine P. Weber, Subhajyoti De, Iwanka Kozarewa, Daniel J. Turner, M. Madan Babu, Mario de Bono

    Published 2010
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  17. 17
    Tumor microbiome links cellular programs and immunity in pancreatic cancer

    Tumor microbiome links cellular programs and immunity in pancreatic cancer by Bassel Ghaddar, Antara Biswas, Chris Harris, M. Bishr Omary, Darren R. Carpizo, Martin J. Blaser, Subhajyoti De

    Published 2022
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  18. 18
    MicroRNAs down-regulate homologous recombination in the G1 phase of cycling cells to maintain genomic stability

    MicroRNAs down-regulate homologous recombination in the G1 phase of cycling cells to maintain genomic stability by Young Eun Choi, Yunfeng Pan, Eunmi Park, Panagiotis A. Konstantinopoulos, Subhajyoti De, Alan D. D’Andrea, Dipanjan Chowdhury

    Published 2014
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  19. 19
    The ADP-ribosyltransferase PARP10/ARTD10 Interacts with Proliferating Cell Nuclear Antigen (PCNA) and Is Required for DNA Damage Tolerance

    The ADP-ribosyltransferase PARP10/ARTD10 Interacts with Proliferating Cell Nuclear Antigen (PCNA) and Is Required for DNA Damage Tolerance by Claudia M. Nicolae, Erin R. Aho, Alexander H.S. Vlahos, Katherine N. Choe, Subhajyoti De, Georgios I. Karras, George‐Lucian Moldovan

    Published 2014
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  20. 20
    Non-Genetic Intra-Tumor Heterogeneity Is a Major Predictor of Phenotypic Heterogeneity and Ongoing Evolutionary Dynamics in Lung Tumors

    Non-Genetic Intra-Tumor Heterogeneity Is a Major Predictor of Phenotypic Heterogeneity and Ongoing Evolutionary Dynamics in Lung Tumors by Anchal Sharma, Elise Merritt, Xiaoju Hu, Angelique Cruz, Chuan Jiang, Halle Sarkodie, Zhan Zhou, Jyoti Malhotra, Gregory Riedlinger, Subhajyoti De

    Published 2019
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