Výsledky vyhledávání - Stefano Toppo

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  1. 1
    Mapping and characterization of G-quadruplexes in Mycobacterium tuberculosis gene promoter regions

    Mapping and characterization of G-quadruplexes in Mycobacterium tuberculosis gene promoter regions Autor Rosalba Perrone, Enrico Lavezzo, Erika Riello, Riccardo Manganelli, Giorgio Palù, Stefano Toppo, Roberta Provvedi, Sara N. Richter

    Vydáno 2017
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  2. 2
    Reducing bias in RNA sequencing data: a novel approach to compute counts

    Reducing bias in RNA sequencing data: a novel approach to compute counts Autor Francesca Finotello, Enrico Lavezzo, Luca Bianco, Luisa Barzon, Paolo Emilio Mazzon, Paolo Fontana, Stefano Toppo, Barbara Di Camillo

    Vydáno 2014
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  3. 3
    Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

    Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms Autor Marco Falda, Stefano Toppo, Alessandro Pescarolo, Enrico Lavezzo, Barbara Di Camillo, Andrea Facchinetti, Elisa Cilia, Riccardo Velasco, Paolo Fontana

    Vydáno 2012
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  4. 4
    Functional Interaction of Phospholipid Hydroperoxide Glutathione Peroxidase with Sperm Mitochondrion-associated Cysteine-rich Protein Discloses the Adjacent Cysteine Motif as a New Substrate of the Selenoperoxidase

    Functional Interaction of Phospholipid Hydroperoxide Glutathione Peroxidase with Sperm Mitochondrion-associated Cysteine-rich Protein Discloses the Adjacent Cysteine Motif as a New... Autor Matilde Maiorino, Antonella Roveri, Louise Benazzi, Valentina Bosello-Travain, Pierluigi Mauri, Stefano Toppo, Silvio C. E. Tosatto, Fulvio Ursini

    Vydáno 2005
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  5. 5
    Telethonin, a novel sarcomeric protein of heart and skeletal muscle

    Telethonin, a novel sarcomeric protein of heart and skeletal muscle Autor Giorgio Valle, Georgine Faulkner, Anna De Antoni, Beniamina Pacchioni, Alberto Pallavicini, D. Pandolfo, Natascia Tiso, Stefano Toppo, Sara Trevisan, Gerolamo Lanfranchi

    Vydáno 1997
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  6. 6
    Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene

    Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene Autor Francesco Sambo, Francesca Finotello, Enrico Lavezzo, Giacomo Baruzzo, Giulia Masi, Elektra Peta, Marco Falda, Stefano Toppo, Luisa Barzon, Barbara Di Camillo

    Vydáno 2018
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  7. 7
    Whole genome sequencing and phylogenetic analysis of West Nile virus lineage 1 and lineage 2 from human cases of infection, Italy, August 2013

    Whole genome sequencing and phylogenetic analysis of West Nile virus lineage 1 and lineage 2 from human cases of infection, Italy, August 2013 Autor Luisa Barzon, Monia Pacenti, Elisa Franchin, Enrico Lavezzo, Giulia Masi, Laura Squarzon, Silvana Pagni, Stefano Toppo, Francesca Russo, Margherita Cattai, Riccardo Cusinato, Giorgio Palù

    Vydáno 2013
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  8. 8
    Inactivation of the glutathione peroxidase GPx4 by the ferroptosis‐inducing molecule RSL3 requires the adaptor protein 14‐3‐3ε

    Inactivation of the glutathione peroxidase GPx4 by the ferroptosis‐inducing molecule RSL3 requires the adaptor protein 14‐3‐3ε Autor Ana‐Marija Vučković, Valentina Bosello-Travain, Luciana Bordin, Giorgio Cozza, Giovanni Miotto, Monica Rossetto, Stefano Toppo, Rina Venerando, Mattia Zaccarin, Matilde Maiorino, Fulvio Ursini, Antonella Roveri

    Vydáno 2019
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  9. 9
    The Thioredoxin Specificity of Drosophila GPx: A Paradigm for a Peroxiredoxin-like Mechanism of many Glutathione Peroxidases

    The Thioredoxin Specificity of Drosophila GPx: A Paradigm for a Peroxiredoxin-like Mechanism of many Glutathione Peroxidases Autor Matilde Maiorino, Fulvio Ursini, Valentina Bosello-Travain, Stefano Toppo, Silvio C. E. Tosatto, Pierluigi Mauri, Katja Becker, Antonella Roveri, Cristiana Bulato, Louise Benazzi, Antonella De Palma, Leopold Flohé

    Vydáno 2006
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  10. 10
    Insight into the mechanism of ferroptosis inhibition by ferrostatin-1

    Insight into the mechanism of ferroptosis inhibition by ferrostatin-1 Autor Giovanni Miotto, Monica Rossetto, Maria Luisa Di Paolo, Laura Orian, Rina Venerando, Antonella Roveri, Ana‐Marija Vučković, Valentina Bosello-Travain, Mattia Zaccarin, Lucio Zennaro, Matilde Maiorino, Stefano Toppo, Fulvio Ursini, Giorgio Cozza

    Vydáno 2019
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  11. 11
    Phylogenetic characterization of Central/Southern European lineage 2 West Nile virus: analysis of human outbreaks in Italy and Greece, 2013–2014

    Phylogenetic characterization of Central/Southern European lineage 2 West Nile virus: analysis of human outbreaks in Italy and Greece, 2013–2014 Autor Luisa Barzon, Anna Papa, Enrico Lavezzo, Elisa Franchin, Monia Pacenti, Alessandro Sinigaglia, Giulia Masi, Marta Trevisan, Laura Squarzon, Stefano Toppo, E. Papadopoulou, Norbert Nowotny, Sebastian Ulbert, Antonio Piralla, Francesca Rovida, Fausto Baldanti, Elena Percivalle, Giorgio Palù

    Vydáno 2015
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  12. 12
    Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection

    Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection Autor Rachel M. Gittelman, Enrico Lavezzo, Thomas M. Snyder, H. Jabran Zahid, Cara L. Carty, Rebecca Elyanow, Sudeb C. Dalai, Ilan R. Kirsch, Lance Baldo, Laura Manuto, Elisa Franchin, Claudia Del Vecchio, Monia Pacenti, Caterina Boldrin, Margherita Cattai, Francesca Saluzzo, Andrea Padoan, Mario Plebani, Fabio Simeoni, Jessica Bordini, Nicola Ivan Lorè, Dejan Lazarević, Daniela María Cirillo, Paolo Ghia, Stefano Toppo, Jonathan M. Carlson, Harlan Robins, Andrea Crisanti, Giovanni Tonon

    Vydáno 2022
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  13. 13
    SARS-CoV-2 antibody dynamics and transmission from community-wide serological testing in the Italian municipality of Vo’

    SARS-CoV-2 antibody dynamics and transmission from community-wide serological testing in the Italian municipality of Vo’ Autor Ilaria Dorigatti, Enrico Lavezzo, Laura Manuto, Constanze Ciavarella, Monia Pacenti, Caterina Boldrin, Margherita Cattai, Francesca Saluzzo, Elisa Franchin, Claudia Del Vecchio, Federico Caldart, G. Castelli, Michele Nicoletti, Eleonora Nieddu, Elisa Salvadoretti, Beatrice Labella, Ludovico Fava, Simone Guglielmo, Mariateresa Fascina, Marco Grazioli, Gualtiero Alvisi, Maria Cristina Vanuzzo, Tiziano Zupo, Reginetta Calandrin, Vittoria Lisi, Lucía Rossi, Ignazio Castagliuolo, Stefano Merigliano, H. Juliette T. Unwin, Mario Plebani, Andrea Padoan, Alessandra Rosalba Brazzale, Stefano Toppo, Neil M. Ferguson, Christl A. Donnelly, Andrea Crisanti

    Vydáno 2021
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  14. 14
    Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications

    Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications Autor Eugene Kolker, Vural Özdemir, Lennart Martens, William S. Hancock, Gordon Anderson, Nathaniel Anderson, Şükrü Aynacıoğlu, Ancha Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette R. Ferguson, Geoffrey Fox, Dmitrij Frishman, Robert L. Grossman, Allison P. Heath, Roger Higdon, Mara Helena Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrián LLerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda L. May, George I. Mias, Matthew Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, M Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl

    Vydáno 2014
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  15. 15
    Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’

    Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’ Autor Enrico Lavezzo, Elisa Franchin, Constanze Ciavarella, Gina Cuomo-Dannenburg, Luisa Barzon, Claudia Del Vecchio, Lucía Rossi, Riccardo Manganelli, Arianna Loregian, Nicolò Navarin, Davide Abate, Manuela Sciro, Stefano Merigliano, Ettore De Canale, Maria Cristina Vanuzzo, Valeria Besutti, Francesca Saluzzo, Francesco Onelia, Monia Pacenti, Saverio Giuseppe Parisi, Giovanni Carretta, Daniele Donato, Luciano Flor, Silvia Cocchio, Giulia Masi, Alessandro Sperduti, Lorenzo Cattarino, Renato Salvador, Michele Nicoletti, Federico Caldart, G. Castelli, Eleonora Nieddu, Beatrice Labella, Ludovico Fava, Matteo Drigo, Katy A. M. Gaythorpe, Alessandra Rosalba Brazzale, Stefano Toppo, Marta Trevisan, Vincenzo Baldo, Christl A. Donnelly, Neil M. Ferguson, Ilaria Dorigatti, Andrea Crisanti, Kylie E. C. Ainslie, Marc Baguelin, Samir Bhatt, Adhiratha Boonyasiri, Olivia Boyd, Lorenzo Cattarino, Constanze Ciavarella, Helen Coupland, Zulma M. Cucunubá, Gina Cuomo-Dannenburg, Bimandra A. Djafaara, Christl A. Donnelly, Ilaria Dorigatti, Sabine van Elsland, Richard G. FitzJohn, Seth Flaxman, Katy A. M. Gaythorpe, Will D. Green, Timothy B. Hallett, Arran Hamlet, David Haw, Natsuko Imai, Benjamin Jeffrey, Edward Knock, Daniel J. Laydon, Thomas A. Mellan, Swapnil Mishra, Gemma Nedjati‐Gilani, Pierre Nouvellet, Lucy Okell, Kris V. Parag, Steven Riley, Hayley A Thompson, H. Juliette T. Unwin, Robert Verity, Michaela Vollmer, Patrick Walker, Caroline E. Walters, Haowei Wang, Yuanrong Wang, Oliver J. Watson, Charles Whittaker, Lilith K. Whittles, Xiaoyue Xi, Neil M. Ferguson

    Vydáno 2020
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  16. 16
    A large-scale evaluation of computational protein function prediction

    A large-scale evaluation of computational protein function prediction Autor Predrag Radivojac, Wyatt T. Clark, Tal Oron, Alexandra M. Schnoes, Tobias Wittkop, Artem Sokolov, Kiley Graim, Christopher S. Funk, Karin Verspoor, Asa Ben‐Hur, Gaurav Pandey, Jeffrey M. Yunes, Ameet Talwalkar, Susanna Repo, Michael L Souza, Damiano Piovesan, Rita Casadio, Zheng Wang, Jianlin Cheng, Hai Fang, Julian Gough, Patrik Koskinen, Petri Törönen, Jussi Nokso-Koivisto, Liisa Holm, Domenico Cozzetto, Daniel Buchan, Kevin Bryson, David T. Jones, Bhakti Limaye, Harshal Inamdar, Avik Datta, Sunitha K Manjari, Rajendra Joshi, Meghana Chitale, Daisuke Kihara, Andreas Martin Lisewski, Serkan Erdin, Eric Venner, Olivier Lichtarge, Robert Rentzsch, Haixuan Yang, Alfonso E. Romero, Prajwal Bhat, Alberto Paccanaro, Tobias Hamp, Rebecca Kaßner, Stefan Seemayer, Esmeralda Vicedo, Christian Schaefer, Dominik Achten, Florian Auer, Ariane C. Boehm, Tatjana Braun, Maximilian Hecht, B. Mark Heron, Peter Hönigschmid, Thomas A. Hopf, Stefanie Kaufmann, Michael Kiening, Denis Krompaß, Cedric Landerer, Yannick Mahlich, Manfred Roos, Jari Björne, Tapio Salakoski, Andrew Wong, Hagit Shatkay, Fanny Gatzmann, I. Sommer, Mark N. Wass, Michael J.E. Sternberg, Nives Škunca, Fran Supek, Matko Bošnjak, Panče Panov, Sašo Džeroski, Tomislav Šmuc, Yiannis Kourmpetis, Aalt D. J. van Dijk, Cajo J. F. ter Braak, Yuanpeng Zhou, Qingtian Gong, Xinran Dong, Weidong Tian, Marco Falda, Paolo Fontana, Enrico Lavezzo, Barbara Di Camillo, Stefano Toppo, Liang Lan, Nemanja Djuric, Yuhong Guo, Slobodan Vučetić, Amos Bairoch, Michal Linial, Patricia C. Babbitt, Steven E. Brenner, Christine Orengo, Burkhard Rost

    Vydáno 2013
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  17. 17
    An expanded evaluation of protein function prediction methods shows an improvement in accuracy

    An expanded evaluation of protein function prediction methods shows an improvement in accuracy Autor Yuxiang Jiang, Tal Oron, Wyatt T. Clark, Asma Bankapur, Daniel D’Andrea, Rosalba Lepore, Christopher S. Funk, Indika Kahanda, Karin Verspoor, Asa Ben‐Hur, Da Chen Emily Koo, Duncan Penfold-Brown, Dennis Shasha, Noah Youngs, Richard Bonneau, Alexandra J. Lin, Sayed Mohammad Ebrahim Sahraeian, Pier Luigi Martelli, Giuseppe Profiti, Rita Casadio, Renzhi Cao, Zhaolong Zhong, Jianlin Cheng, Adrian Altenhoff, Nives Škunca, Christophe Dessimoz, Tunca Doğan, Kai Hakala, Suwisa Kaewphan, Farrokh Mehryary, Tapio Salakoski, Filip Ginter, Hai Fang, Ben Smithers, Matt E. Oates, Julian Gough, Petri Törönen, Patrik Koskinen, Liisa Holm, Ching-Tai Chen, Wen−Lian Hsu, Kevin Bryson, Domenico Cozzetto, Federico Minneci, David T. Jones, Samuel Chapman, Dukka Bkc, Ishita Khan, Daisuke Kihara, Dan Ofer, Nadav Rappoport, Amos Stern, Elena Cibrián–Uhalte, Paul Denny, Rebecca E. Foulger, Reija Hieta, Duncan Legge, Ruth C. Lovering, Michele Magrane, Anna N. Melidoni, Prudence Mutowo, Klemens Pichler, Aleksandra Shypitsyna, Biao Li, Pooya Zakeri, Sarah ElShal, Léon-Charles Tranchevent, Sayoni Das, Natalie L. Dawson, David Lee, Jonathan Lees, Ian Sillitoe, Prajwal Bhat, Tamás Nepusz, Alfonso E. Romero, Rajkumar Sasidharan, Haixuan Yang, Alberto Paccanaro, Jesse Gillis, Adriana E. Sedeño-Cortés, Paul Pavlidis, Shou Feng, Juan Miguel Cejuela, Tatyana Goldberg, Tobias Hamp, Lothar Richter, Asaf Salamov, Toni Gabaldón, Marina Marcet‐Houben, Fran Supek, Qingtian Gong, Wei Ning, Yuanpeng Zhou, Weidong Tian, Marco Falda, Paolo Fontana, Enrico Lavezzo, Stefano Toppo, Carlo Ferrari, Manuel Giollo

    Vydáno 2016
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  18. 18
    The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

    The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens Autor Naihui Zhou, Yuxiang Jiang, Timothy Bergquist, Alexandra Lee, Balint Z Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George P. Georghiou, Huy Nguyen, Md-Nafiz Hamid, L. Taylor Davis, Tunca Doğan, Volkan Atalay, Ahmet Süreyya Rifaioğlu, Alperen Dalkıran, Rengül Çetin-Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemović, Vladimir Perović, Radoslav Davidović, Neven Šumonja, Nevena Veljković, Ehsaneddin Asgari, Mohammad R. K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fábio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan Medlar, Elaine Zosa, Itamar Borukhov, Ilya B. Novikov, Angela D. Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Sašo Džeroski, Ian Sillitoe, Sayoni Das, Jonathan Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, José Manuel Rodrı́guez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Ré, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie‐Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo

    Vydáno 2019
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