Search Results - Sofie R. Salama

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  1. 1
    Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E

    Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E by Diane C. Fingar, Sofie R. Salama, Christina Tsou, Ed Harlow, John Blenis

    Published 2002
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  2. 2
    Combinatorial roles for pRB, p107, and p130 in E2F-mediated cell cycle control

    Combinatorial roles for pRB, p107, and p130 in E2F-mediated cell cycle control by Marie Classon, Sofie R. Salama, Carolyn Gorka, Roseann Mulloy, Pascal Braun, Ed Harlow

    Published 2000
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  3. 3
    Regulation of Rugosity and Biofilm Formation in <i>Vibrio cholerae</i> : Comparison of VpsT and VpsR Regulons and Epistasis Analysis of <i>vpsT</i> , <i>vpsR</i> , and <i>hapR</i>

    Regulation of Rugosity and Biofilm Formation in <i>Vibrio cholerae</i> : Comparison of VpsT and VpsR Regulons and Epistasis Analysis of <i>vpsT</i> , <i>vpsR</i> , and <i>hapR</i> by Sinem Beyhan, Kıvanç Bilecen, Sofie R. Salama, Catharina Casper-Lindley, Fitnat H. Yildiz

    Published 2006
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  4. 4
    SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data

    SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data by Line Dahl Poulsen, Lukasz Jan Kielpinski, Sofie R. Salama, Anders Krogh, Jeppe Vinther

    Published 2015
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  5. 5
    Cloning and characterization of Kluyveromyces lactis SEC14, a gene whose product stimulates Golgi secretory function in Saccharomyces cerevisiae

    Cloning and characterization of Kluyveromyces lactis SEC14, a gene whose product stimulates Golgi secretory function in Saccharomyces cerevisiae by Sofie R. Salama, Ann E. Cleves, David E Malehorn, Eric Whitters, Vytas A. Bankaitis

    Published 1990
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  6. 6
    The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families

    The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families by Jason D. Fernandes, Armando Zamudio-Hurtado, Hiram Clawson, W. James Kent, David Haussler, Sofie R. Salama, Maximilian Haeussler

    Published 2020
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  7. 7
    Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons

    Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons by Zack Sanborn, Sofie R. Salama, Mia Grifford, Cameron Brennan, Tom Mikkelsen, Suresh C. Jhanwar, Sol Katzman, Lynda Chin, David Haussler

    Published 2013
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  8. 8
    Three Periods of Regulatory Innovation During Vertebrate Evolution

    Three Periods of Regulatory Innovation During Vertebrate Evolution by Craig B. Lowe, Manolis Kellis, Adam Siepel, Brian J. Raney, Michèle Clamp, Sofie R. Salama, David M. Kingsley, Kerstin Lindblad‐Toh, David Haussler

    Published 2011
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  9. 9
    FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

    FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing by Jason G. Underwood, Andrew Uzilov, Sol Katzman, Courtney Onodera, Jacob E Mainzer, David H. Mathews, Todd M. Lowe, Sofie R. Salama, David Haussler

    Published 2010
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  10. 10
    HIPPIE: A Multimodal Deep Learning Model for Electrophysiological Classification of Neurons

    HIPPIE: A Multimodal Deep Learning Model for Electrophysiological Classification of Neurons by Jesus Gonzalez-Ferrer, Julian Lehrer, H. Schweiger, Jinghui Geng, Sebastian Hernandez, Francisco Reyes, Jessica Sevetson, Sofie R. Salama, Mircea Teodorescu, David Haussler, Mohammed A. Mostajo-Radji

    Published 2025
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  11. 11
    Forces Shaping the Fastest Evolving Regions in the Human Genome

    Forces Shaping the Fastest Evolving Regions in the Human Genome by Katherine S. Pollard, Sofie R. Salama, Bryan H. King, Andrew D. Kern, Timothy R. Dreszer, Sol Katzman, Adam Siepel, Jakob Skou Pedersen, Gill Bejerano, Robert Baertsch, Kate R. Rosenbloom, Jim Kent, David Haussler

    Published 2006
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  12. 12
    EPIG-16MOST DIFFERENTIAL DNA METHYLATION CHANGES OCCUR AT CANDIDATE ENHANCER ELEMENTS FOR RECURRENT LOWER GRADE GLIOMA AND GLIOBLASTOMA

    EPIG-16MOST DIFFERENTIAL DNA METHYLATION CHANGES OCCUR AT CANDIDATE ENHANCER ELEMENTS FOR RECURRENT LOWER GRADE GLIOMA AND GLIOBLASTOMA by Camila Souza, Tathiane M. Malta, Thaís S. Sabedot, Lindsay Stetson, Daniela Pretti da Cunha Tirapelli, Luciano Neder, Carlos Gilberto Carlotti, Jean C. Zenklusen, Sofie R. Salama, Laila Poisson, Daniel J. Brat, Jill S. Barnholtz‐Sloan, Houtan Noushmehr

    Published 2015
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  13. 13
    TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal

    TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal by Yulia Newton, Adam M. Novak, Teresa Swatloski, Duncan C. McColl, Sahil Chopra, Kiley Graim, Alana S. Weinstein, Robert Baertsch, Sofie R. Salama, Kyle Ellrott, M. R. Chopra, Theodore C. Goldstein, David Haussler, Olena Morozova, Joshua M. Stuart

    Published 2017
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  14. 14
    Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes

    Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes by Andrew R. Field, Frank M. J. Jacobs, Ian T. Fiddes, Alex P. R. Phillips, Andrea M. Reyes-Ortiz, Erin LaMontagne, Lila Whitehead, Vincent Meng, Jimi L. Rosenkrantz, Mari Olsen, Max Hauessler, Sol Katzman, Sofie R. Salama, David Haussler

    Published 2019
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  15. 15
    Comparative analysis of RNA expression in a single institution cohort of pediatric cancer patients

    Comparative analysis of RNA expression in a single institution cohort of pediatric cancer patients by Yvonne Vasquez, Holly C. Beale, Lauren Sanders, A. Geoffrey Lyle, Ellen T. Kephart, Katrina Learned, Drew Thompson, Jennifer Peralez, Amy Li, Min Huang, Kimberly A. Pyke‐Grimm, Sofie R. Salama, David Haussler, Isabel Bjork, L. Spunt Sheri, Olena M. Vaske

    Published 2025
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  16. 16
    Modulation of neuronal activity in cortical organoids with bioelectronic delivery of ions and neurotransmitters

    Modulation of neuronal activity in cortical organoids with bioelectronic delivery of ions and neurotransmitters by Yunjeong Park, Sebastian Hernandez, Cristian O. Hernandez, H. Schweiger, Houpu Li, Kateryna Voitiuk, Harika Dechiraju, Nico Hawthorne, Elana M. Muzzy, John Selberg, Frederika N. Sullivan, Roberto Urcuyo, Sofie R. Salama, Elham Aslankoohi, Heather J. Knight, Mircea Teodorescu, Mohammed A. Mostajo-Radji, Marco Rolandi

    Published 2024
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  17. 17
    GENO-06A PAN-GLIOMA CHARACTERIZATION OF GENOMIC, EPIGENOMIC AND TRANSCRIPTOMIC ACTIVITIES REVEALS NOVEL RELATIONSHIPS BETWEEN HISTOLOGICAL SUBTYPES AND MOLECULAR SIGNATURES

    GENO-06A PAN-GLIOMA CHARACTERIZATION OF GENOMIC, EPIGENOMIC AND TRANSCRIPTOMIC ACTIVITIES REVEALS NOVEL RELATIONSHIPS BETWEEN HISTOLOGICAL SUBTYPES AND MOLECULAR SIGNATURES by Floris P Barthel, Michele Ceccarelli, Tathiane M. Malta, Thaís S. Sabedot, Sofie R. Salama, Stefano Maria Pagnotta, Bradley A. Murray, Olena Morozova, Yulia Newton, Daniel J. Brat, Andrew D. Cherniack, Hailei Zhang, Laila Poisson, Lee Cooper, Raúl Rabadán, Peter W. Laird, David H. Gutmann, Houtan Noushmehr, Antonio Iavarone, Roel G.W. Verhaak

    Published 2015
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  18. 18
    Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution

    Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution by Alex A. Pollen, Aparna Bhaduri, Madeline G. Andrews, Tomasz J. Nowakowski, Olivia S. Meyerson, Mohammed A. Mostajo-Radji, Elizabeth Di Lullo, Beatriz Alvarado, Melanie Bedolli, Max L. Dougherty, Ian T. Fiddes, Zev Kronenberg, Joe Shuga, Anne Leyrat, Jay West, Marina Bershteyn, Craig B. Lowe, Bryan J. Pavlovic, Sofie R. Salama, David Haussler, Evan E. Eichler, Arnold R. Kriegstein

    Published 2019
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  19. 19
    Distinct epigenetic shift in a subset of Glioma CpG island methylator phenotype (G-CIMP) during tumor recurrence

    Distinct epigenetic shift in a subset of Glioma CpG island methylator phenotype (G-CIMP) during tumor recurrence by Camila Ferreira de Souza, Thaís S. Sabedot, Tathiane M. Malta, Lindsay Stetson, Olena Morozova, А. В. Соколов, Peter W. Laird, Maciej Wiznerowicz, Antonio Iavarone, James M. Snyder, Ana C. deCarvalho, Zachary Sanborn, Kerrie L. McDonald, William A. Friedman, Daniela Pretti da Cunha Tirapelli, Laila Poisson, Tom Mikkelsen, Carlos Gilberto Carlotti, Steven N. Kalkanis, Jean C. Zenklusen, Sofie R. Salama, Jill S. Barnholtz‐Sloan, Houtan Noushmehr

    Published 2017
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  20. 20
    A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrence

    A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrence by Camila Ferreira de Souza, Thaís S. Sabedot, Tathiane M. Malta, Lindsay Stetson, Olena Morozova, А. В. Соколов, Peter W. Laird, Maciej Wiznerowicz, Antonio Iavarone, James M. Snyder, Ana C. deCarvalho, Zachary Sanborn, Kerrie L. McDonald, William A. Friedman, Daniela Pretti da Cunha Tirapelli, Laila Poisson, Tom Mikkelsen, Carlos Gilberto Carlotti, Steven N. Kalkanis, Jean C. Zenklusen, Sofie R. Salama, Jill S. Barnholtz‐Sloan, Houtan Noushmehr

    Published 2018
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