Výsledky vyhledávání - Simon Cawley

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  1. 1
    Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems

    Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems Autor Lior Pachter, Marina Alexandersson, Simon Cawley

    Vydáno 2002
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  2. 2
    SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model

    SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model Autor Marina Alexandersson, Simon Cawley, Lior Pachter

    Vydáno 2003
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  3. 3
    Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22

    Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22 Autor Dione Kampa, Jill Cheng, Philipp Kapranov, Mark Yamanaka, Shane Brubaker, Simon Cawley, Jörg Drenkow, Antonio Piccolboni, Stefan Bekiranov, Gregg Helt, Hari Tammana, T Gingeras

    Vydáno 2004
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  4. 4
    Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays

    Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays Autor X. Di, Hideo Matsuzaki, T. A. Webster, Earl Hubbell, George E. Liu, Shan‐Shan Dong, D. Bartell, Jingjing Huang, Richard Chiles, Guang Yang, Mengjiao shen, David Kulp, Gwen Kennedy, Rui Mei, Keith Jones, Simon Cawley

    Vydáno 2005
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  5. 5
    Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

    Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs Autor Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler

    Vydáno 2008
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  6. 6
    Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs

    Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs Autor Simon Cawley, Stefan Bekiranov, Huck‐Hui Ng, Philipp Kapranov, Edward A. Sekinger, Dione Kampa, Antonio Piccolboni, Victor Sementchenko, Jill Cheng, Alan J. Williams, Raymond M. Wheeler, Brant Wong, Jörg Drenkow, Mark Yamanaka, Sandeep Patel, Shane Brubaker, Hari Tammana, Gregg Helt, Kevin Struhl, T Gingeras

    Vydáno 2004
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  7. 7
    Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14

    Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14 Autor Howard J. Edenberg, Laura J. Bierut, Paul Boyce, Manqiu Cao, Simon Cawley, Richard Chiles, Kimberly F. Doheny, Thomas Hansen, Tony Hinrichs, Kevin Jones, Mark Kelleher, Giulia C. Kennedy, Guoying Liu, Gregory A. Marcus, Celeste McBride, Sarah Murray, Arnold Oliphant, James Pettengill, Bernice Porjesz, Elizabeth Pugh, John P. Rice, Todd Rubano, Stu Shannon, Rhoberta Steeke, Jay A. Tischfield, Ya Yu Tsai, Chun Zhang, Henri Begleiter

    Vydáno 2005
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  8. 8
    An integrated semiconductor device enabling non-optical genome sequencing

    An integrated semiconductor device enabling non-optical genome sequencing Autor Jonathan M. Rothberg, Wolfgang Hinz, Todd M. Rearick, Jonathan H. Schultz, William J. Mileski, M. Smith Davey, John H. Leamon, Kim L. Johnson, Mark J. Milgrew, Matthew Edwards, Jeremy Hoon, Jan Fredrik Simons, David F. Marran, Jason W. Myers, John F. Davidson, Annika Branting, John R. Nobile, Bernard P. Puc, David R. Light, Travis Clark, Martin Huber, Jeffrey T. Branciforte, Isaac B. Stoner, Simon Cawley, M.R. Lyons, Yutao Fu, Nils Homer, Marina Sedova, Xin Miao, Brian D. Reed, Jeffrey Sabina, Erika Feierstein, Michelle Schorn, Mohammad Alanjary, Eileen T. Dimalanta, Devin Dressman, Rachel Kasinskas, Tanya Sokolsky, Jacqueline A. Fidanza, Eugeni Namsaraev, Kevin McKernan, Alan J. Williams, George T. Roth, J.M. Bustillo

    Vydáno 2011
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  9. 9
    Next generation genome-wide association tool: Design and coverage of a high-throughput European-optimized SNP array

    Next generation genome-wide association tool: Design and coverage of a high-throughput European-optimized SNP array Autor Thomas J. Hoffmann, Mark Kvale, Stephanie Hesselson, Yiping Zhan, Christine Aquino, Yang Cao, Simon Cawley, Elaine Chung, Sheryl Connell, Jasmin L Eshragh, Marcia Ewing, Jeremy Gollub, Mary Henderson, Earl Hubbell, Carlos Iribarren, Jay S. Kaufman, Richard Z. Lao, Yontao Lu, Dana Ludwig, Gurpreet K. Mathauda, William B McGuire, Gangwu Mei, Sunita Miles, Matthew M. Purdy, Charles P. Quesenberry, Dilrini K. Ranatunga, Sarah Rowell, Marianne Sadler, Michael H. Shapero, Ling Shen, Tanushree Shenoy, David Smethurst, Stephen K. Van Den Eeden, Larry Walter, Eunice Wan, Reid Wearley, Teresa Webster, Christopher C. Wen, Li Weng, Rachel A. Whitmer, Alan J. Williams, Simon Wong, Chia Zau, Andrea Finn, Catherine Schaefer, Pui‐Yan Kwok, Neil Risch

    Vydáno 2011
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  10. 10
    A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency

    A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency Autor Wendell Jones, Binsheng Gong, Natalia Novoradovskaya, Dan Li, Rebecca Kusko, Todd Richmond, Donald J. Johann, Halil Bişğin, Sayed Mohammad Ebrahim Sahraeian, Pierre R. Bushel, Mehdi Pirooznia, Katherine Wilkins, Marco Chierici, Wenjun Bao, Lee S Basehore, Anne Bergstrom Lucas, Daniel L. Burgess, Daniel Butler, Simon Cawley, Chia-Jung Chang, Guangchun Chen, Tao Chen, Yun-Ching Chen, Daniel J. Craig, Ángela del Pozo, Jonathan Foox, Margherita Francescatto, Yutao Fu, Cesare Furlanello, Kristina Giorda, Kira P. Grist, Meijian Guan, Yingyi Hao, Scott Happe, Gunjan Hariani, Nathan Haseley, Jeff S. Jasper, Giuseppe Jurman, David P. Kreil, Paweł P. Łabaj, Kevin Lai, Jianying Li, Quan‐Zhen Li, Yulong Li, Zhiguang Li, Zhichao Liu, Mario Solís, Kelci Miclaus, Raymond D. Miller, Vinay Kumar Mittal, Marghoob Mohiyuddin, Carlos Pabón-Peña, Barbara L. Parsons, Fujun Qiu, Andreas Scherer, Tieliu Shi, Suzy Stiegelmeyer, Chen Suo, Nikola Tom, Dong Wang, Zhining Wen, Leihong Wu, Wenzhong Xiao, Chang Xu, Ying Yu, Jiyang Zhang, Yifan Zhang, Zhihong Zhang, Yuanting Zheng, Christopher E. Mason, James C. Willey, Weida Tong, Leming Shi, Joshua Xu

    Vydáno 2021
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  11. 11
    Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology

    Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology Autor Ira W. Deveson, Binsheng Gong, Kevin Lai, Jennifer S. LoCoco, Todd Richmond, Jeoffrey Schageman, Zhihong Zhang, Natalia Novoradovskaya, James C. Willey, Wendell Jones, Rebecca Kusko, Guangchun Chen, Bindu Swapna Madala, James Blackburn, Igor Stevanovski, Ambica Bhandari, Devin Close, Jeffrey Conroy, Michael Hubank, Narasimha Marella, Piotr A. Mieczkowski, Fujun Qiu, Robert Sebra, Daniel Stetson, Lihyun Sun, Philippe Szankasi, Haowen Tan, Lin‐Ya Tang, Hanane Arib, Hunter Best, Blake Burgher, Pierre R. Bushel, Fergal Casey, Simon Cawley, Chia-Jung Chang, Jonathan Choi, Jorge M. Dinis, Daniel Duncan, Agda Karina Eterovic, Liang Feng, Abhisek Ghosal, Kristina Giorda, Sean T. Glenn, Scott Happe, Nathan Haseley, Kyle Horvath, Li-Yuan Hung, Mirna Jarosz, Garima Kushwaha, Dan Li, Quan‐Zhen Li, Zhiguang Li, Liang-Chun Liu, Zhichao Liu, Marie‐Aline Charles, Christopher E. Mason, Dalila B. Megherbi, Tom Morrison, Carlos Pabón-Peña, Mehdi Pirooznia, Paula Proszek, Amelia Raymond, Paul M. Rindler, Rebecca Ringler, Andreas Scherer, Rita Shaknovich, Tieliu Shi, Melissa Smith, Ping Song, Maya Strahl, Venkat J. Thodima, Nikola Tom, Suman Verma, Jiashi Wang, Leihong Wu, Wenzhong Xiao, Chang Xu, Mary Qu Yang, Guangliang Zhang, Sa Zhang, Yilin Zhang, Leming Shi, Weida Tong, Donald J. Johann, Tim R. Mercer, Joshua Xu

    Vydáno 2021
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  12. 12
    Initial sequencing and comparative analysis of the mouse genome

    Initial sequencing and comparative analysis of the mouse genome Autor R Waterston, Kerstin Lindblad‐Toh, Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, Jonathan Wood, Robert Baertsch, J. Bailey, K. F. Barlow, Stephan Beck, E. Berry, Bruce W. Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R. Brent, Daniel G. Brown, S.D.M. Brown, Carol J. Bult, John H. Burton, Jonathan A. Butler, R. Duncan Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif Chinwalla, Deanna M. Church, Michèle Clamp, Christopher Clee, Francis S. Collins, Lisa L. Cook, Richard R. Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, J. Davies, Kimberly D. Delehaunty, Justin Deri, Emmanouil T. Dermitzakis, Colin N. Dewey, Nicholas J. Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M. Dunn, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam L. Felsenfeld, Ginger Fewell, Paul Flicek, Karen Foley, Wayne N. Frankel, Lucinda A. Fulton, Robert S. Fulton, Terrence S. Furey, Diane Gage, Richard A. Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina Graves, Eric D. Green, Simon G. Gregory, Roderic Guigó, Mark S. Guyer, Ross C. Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W. Hillier, Angie S. Hinrichs, Wratko Hlavina, Timothy R. Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian J. Jackson, David B. Jaffe, L. Steven Johnson, Matthew C. Jones, Thomas A. Jones, Ann Joy, Michael Kamal, Elinor K. Karlsson

    Vydáno 2002
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  13. 13
    Genome sequence of the Brown Norway rat yields insights into mammalian evolution

    Genome sequence of the Brown Norway rat yields insights into mammalian evolution Autor Richard A. Gibbs, George M. Weinstock, Michael L. Metzker, Donna M. Muzny, Erica Sodergren, Steven E. Scherer, Graham Scott, David L. Steffen, Kim C. Worley, Paula E. Burch, Geoffrey Okwuonu, Sandra Hines, Lora Lewis, Christine DeRamo, Oliver Delgado, Shannon Dugan-Rocha, George Miner, Margaret Morgan, Alicia Hawes, Rachel Gill, Robert A. Holt, Mark D. Adams, Peter G. Amanatides, Holly Baden-Tillson, Mary Barnstead, Soo H. Chin, Cheryl Evans, Steve Ferriera, Carl Fosler, Anna Glodek, Zhiping Gu, D. E. Jennings, Cheryl Kraft, T. Nguyen, Cynthia Pfannkoch, Cynthia D. Sitter, Granger Sutton, Sourav Chatterji, Trevor Woodage, Douglas R. Smith, Hongmei Lee, Erik Gustafson, Patrick Cahill, A. Kana, Lynn Doucette‐Stamm, Jim Wingrove, Jeanette P. Schmidt, Robert B. Weiss, Diane M. Dunn, Eric D. Green, Robert W. Blakesley, Gerard G. Bouffard, Pieter J. de Jong, Kazutoyo Osoegawa, Baoli Zhu, Marco A. Marra, Jacqueline E. Schein, Ian Bosdet, Christopher D. Fjell, Steven J.M. Jones, Martin Krzywinski, Carrie Mathewson, Asim Siddiqui, Natasja Wye, John D. McPherson, Shaying Zhao, Claire M. Fraser, Jyoti Shetty, S. Shatsman, Keita Geer, Yixin Chen, Sofyia Abramzon, William C. Nierman, Richard A. Gibbs, George M. Weinstock, Paul Havlak, Rui Chen, K. James Durbin, R. Simons, Yanru Ren, Xingzhi Song, Bingshan Li, Yue Liu, Xiang Qin, Simon Cawley, George M. Weinstock, Kim C. Worley, Austin J. Cooney, Richard A. Gibbs, Lisa M. D'Souza, Kirt Martin, Jia Qian Wu, Manuel L. Gonzalez‐Garay, Andrew Jackson, Kenneth J. Kalafus, Michael P. McLeod, Aleksandar Milosavljevic, Davinder Virk, А. А. Волков, David A. Wheeler

    Vydáno 2004
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