Výsledky vyhledávání - Shrabanti Chowdhury

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  1. 1
    Quantification of Human Epidermal Growth Factor Receptor 2 by Immunopeptide Enrichment and Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded and Frozen Breast Cancer Tissues

    Quantification of Human Epidermal Growth Factor Receptor 2 by Immunopeptide Enrichment and Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded and Frozen Breast Cancer T... Autor Jacob J. Kennedy, Jeffrey R. Whiteaker, Laura C. Kennedy, Dustin E. Bosch, Melissa Lerch, Regine M. Schoenherr, Lei Zhao, Chenwei Lin, Shrabanti Chowdhury, Mark Kilgore, Kimberly H. Allison, Pei Wang, Andrew N. Hoofnagle, Geoffrey S. Baird, Amanda G. Paulovich

    Vydáno 2021
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  2. 2
    Multiomic analysis identifies CPT1A as a potential therapeutic target in platinum-refractory, high-grade serous ovarian cancer

    Multiomic analysis identifies CPT1A as a potential therapeutic target in platinum-refractory, high-grade serous ovarian cancer Autor Dongqing Huang, Shrabanti Chowdhury, Hong Wang, Sara R. Savage, Richard G. Ivey, Jacob J. Kennedy, Jeffrey R. Whiteaker, Chenwei Lin, Xiaonan Hou, Ann L. Oberg, Melissa C. Larson, Najmeh Eskandari, Davide Delisi, Saverio Gentile, Catherine J. Huntoon, Uliana J. Voytovich, Zahra Shire, Qing Yu, Steven P. Gygi, Andrew N. Hoofnagle, Zachary T. Herbert, Travis D. Lorentzen, Anna Calinawan, Larry M. Karnitz, S. John Weroha, Scott H. Kaufmann, Bing Zhang, Pei Wang, Michael J. Birrer, Amanda G. Paulovich

    Vydáno 2021
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  3. 3
    Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer

    Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer Autor Shrabanti Chowdhury, Jacob J. Kennedy, Richard G. Ivey, Oscar Murillo, Noshad Hosseini, Xiaoyu Song, Francesca Petralia, Anna Calinawan, Sara R. Savage, Anna B. Berry, Boris Reva, Umut Özbek, Azra Krek, Weiping Ma, Felipe da Veiga Leprevost, Jiayi Ji, Seungyeul Yoo, Chenwei Lin, Uliana J. Voytovich, Yajue Huang, Sun Hee Lee, Lindsay Bergan, Travis D. Lorentzen, Mehdi Mesri, Henry Rodriguez, Andrew N. Hoofnagle, Zachary T. Herbert, Alexey I. Nesvizhskii, Bing Zhang, Jeffrey R. Whiteaker, David Fenyö, Wilson McKerrow, Joshua Wang, Stephan C. Schürer, Vasileios Stathias, X. Steven Chen, Mary Helen Barcellos‐Hoff, Timothy K. Starr, Boris Winterhoff, Andrew C. Nelson, Samuel C. Mok, Scott H. Kaufmann, Charles W. Drescher, Marcin Cieślik, Pei Wang, Michael J. Birrer, Amanda G. Paulovich

    Vydáno 2023
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  4. 4
    Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

    Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma Autor David Clark, Saravana M. Dhanasekaran, Francesca Petralia, Jianbo Pan, Xiaoyu Song, Yingwei Hu, Felipe da Veiga Leprevost, Boris Reva, T. Mamie Lih, Hui-Yin Chang, Weiping Ma, Chen Huang, Christopher J. Ricketts, Lijun Chen, Azra Krek, Yize Li, Dmitry Rykunov, Qing Kay Li, Lin S. Chen, Umut Özbek, Suhas Vasaikar, Yige Wu, Seungyeul Yoo, Shrabanti Chowdhury, Matthew A. Wyczalkowski, Jiayi Ji, Michael Schnaubelt, Andy T. Kong, Sunantha Sethuraman, Dmitry M. Avtonomov, Minghui Ao, Antonio Colaprico, Song Cao, Kyung-Cho Cho, Selim Kalaycı, Shiyong Ma, Wenke Liu, Kelly V. Ruggles, Anna Calinawan, Zeynep H. Gümüş, Daniel Geiszler, Emily Kawaler, Guo Ci Teo, Bo Wen, Yuping Zhang, Sarah Keegan, Kai Li, Feng Chen, Nathan Edwards, Phillip M. Pierorazio, Xi Chen, Christian P. Pavlovich, A. Ari Hakimi, Gabriel Bromiński, James J. Hsieh, Andrzej Antczak, Tatiana Omelchenko, Jan Lubiński, Maciej Wiznerowicz, W. Marston Linehan, Christopher R. Kinsinger, Mathangi Thiagarajan, Emily S. Boja, Mehdi Mesri, Tara Hiltke, Ana I. Robles, Henry Rodriguez, Jiang Qian, David Fenyö, Bing Zhang, Li Ding, Eric E. Schadt, Arul M. Chinnaiyan, Zhen Zhang, Gilbert S. Omenn, Marcin Cieślik, Daniel W. Chan, Alexey I. Nesvizhskii, Pei Wang, Hui Zhang, A. Samad Hashimi, Alexander R. Pico, Alla Karpova, Alyssa Charamut, Amanda G. Paulovich, Amy M. Perou, Anna Malovannaya, Annette Marrero-Oliveras, Anupriya Agarwal, Barbara Hindenach, Barbara L. Pruetz, Beom‐Jun Kim, Brian J. Druker, Chelsea J. Newton, Chet Birger, Corbin D. Jones, Cristina E. Tognon, D.R. Mani, Dana R. Valley, Daniel C. Rohrer

    Vydáno 2019
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  5. 5
    Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer

    Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer Autor Francesca Petralia, Nicole Tignor, Boris Reva, Mateusz Koptyra, Shrabanti Chowdhury, Dmitry Rykunov, Azra Krek, Weiping Ma, Yuankun Zhu, Jiayi Ji, Anna Calinawan, Jeffrey R. Whiteaker, Antonio Colaprico, Vasileios Stathias, Tatiana Omelchenko, Xiaoyu Song, Pichai Raman, Yiran Guo, Miguel Brown, Richard G. Ivey, John Szpyt, Sanjukta Guha Thakurta, Marina Gritsenko, Karl Weitz, Gonzalo López, Selim Kalaycı, Zeynep H. Gümüş, Seungyeul Yoo, Felipe da Veiga Leprevost, Hui-Yin Chang, Karsten Krug, Lizabeth Katsnelson, Ying Wang, Jacob J. Kennedy, Uliana J. Voytovich, Lei Zhao, Krutika S. Gaonkar, Brian Ennis, Bo Zhang, Valérie Baubet, Lamiya Tauhid, Jena Lilly, Jennifer Mason, Bailey Farrow, Nathan Young, Sarah Leary, Jamie Moon, Vladislav Petyuk, Javad Nazarian, Nithin D. Adappa, James N. Palmer, Robert M. Lober, Samuel Rivero-Hinojosa, Liang-Bo Wang, Joshua M. Wang, Matilda Broberg, Rosalie Chu, Ronald J. Moore, Matthew Monroe, Rui Zhao, Richard Smith, Jun Zhu, Ana I. Robles, Mehdi Mesri, Emily S. Boja, Tara Hiltke, Henry Rodriguez, Bing Zhang, Eric E. Schadt, D.R. Mani, Li Ding, Antonio Iavarone, Maciej Wiznerowicz, Stephan C. Schürer, Xi S. Chen, Allison P. Heath, Jo Lynne Rokita, Alexey I. Nesvizhskii, David Fenyö, Karin Rodland, Tao Liu, Steven P. Gygi, Amanda G. Paulovich, Adam Resnick, Phillip B. Storm, Brian R. Rood, Pei Wang, Alicia Francis, Allison M. Morgan, Angela J. Waanders, Angela N. Viaene, Anna Maria Buccoliero, Arul M. Chinnaiyan, Carina A. Leonard, Cassie Kline, Chiara Caporalini, Christopher R. Kinsinger, Chunde Li, David E. Kram, Derek Hanson

    Vydáno 2020
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  6. 6
    Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma

    Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma Autor Chen Huang, Lijun Chen, Sara R. Savage, Rodrigo Vargas Eguez, Yongchao Dou, Yize Li, Felipe da Veiga Leprevost, Eric J. Jaehnig, Jonathan T. Lei, Bo Wen, Michael Schnaubelt, Karsten Krug, Xiaoyu Song, Marcin Cieślik, Hui-Yin Chang, Matthew A. Wyczalkowski, Kai Li, Antonio Colaprico, Qing Kay Li, David Clark, Yingwei Hu, Liwei Cao, Jianbo Pan, Yuefan Wang, Kyung-Cho Cho, Zhiao Shi, Yuxing Liao, Wen Jiang, Meenakshi Anurag, Jiayi Ji, Seungyeul Yoo, Daniel Cui Zhou, Wen-Wei Liang, Michael C. Wendl, Pankaj Vats, Steven A. Carr, D.R. Mani, Zhen Zhang, Jiang Qian, Xi S. Chen, Alexander R. Pico, Pei Wang, Arul M. Chinnaiyan, Karen A. Ketchum, Christopher R. Kinsinger, Ana I. Robles, Eunkyung An, Tara Hiltke, Mehdi Mesri, Mathangi Thiagarajan, Alissa M. Weaver, Andrew G. Sikora, Jan Lubiński, Małgorzata Wierzbicka, Maciej Wiznerowicz, Shankha Satpathy, Michael A. Gillette, George Miles, Matthew J. Ellis, Gilbert S. Omenn, Henry Rodriguez, Emily S. Boja, Saravana M. Dhanasekaran, Li Ding, Alexey I. Nesvizhskii, Adel K. El‐Naggar, Daniel W. Chan, Hui Zhang, Bing Zhang, Anupriya Agarwal, Matthew L. Anderson, Shayan C. Avanessian, Dmitry M. Avtonomov, Oliver F. Bathe, Chet Birger, Michael J. Birrer, Lili M. Blumenberg, William Bocik, Uma Borate, Melissa Borucki, Meghan C. Burke, Shuang Cai, Anna Calinawan, Sandra Cerda, Alyssa Charamut, Lin Chen, Shrabanti Chowdhury, Karl R. Clauser, Houston Culpepper, Tomasz Czernicki, Fulvio D’Angelo, Jacob Day, Stephanie Young, Emek Demir, Fei Ding, Marcin J. Domagalski, Joseph C. Dort, Brian J. Druker, Elizabeth R. Duffy, Maureen A. Dyer

    Vydáno 2021
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  7. 7
    Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

    Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma Autor David Clark, Saravana M. Dhanasekaran, Francesca Petralia, Jianbo Pan, Xiaoyu Song, Yingwei Hu, Felipe da Veiga Leprevost, Boris Reva, T. Mamie Lih, Hui-Yin Chang, Weiping Ma, Chen Huang, Christopher J. Ricketts, Lijun Chen, Azra Krek, Yize Li, Dmitry Rykunov, Qing Kay Li, Lin S. Chen, Umut Özbek, Suhas Vasaikar, Yige Wu, Seungyeul Yoo, Shrabanti Chowdhury, Matthew A. Wyczalkowski, Jiayi Ji, Michael Schnaubelt, Andy T. Kong, Sunantha Sethuraman, Dmitry M. Avtonomov, Minghui Ao, Antonio Colaprico, Song Cao, Kyung-Cho Cho, Selim Kalaycı, Shiyong Ma, Wenke Liu, Kelly V. Ruggles, Anna Calinawan, Zeynep H. Gümüş, Daniel Geiszler, Emily Kawaler, Guo Ci Teo, Bo Wen, Yuping Zhang, Sarah Keegan, Kai Li, Feng Chen, Nathan Edwards, Phillip M. Pierorazio, Xi Chen, Christian P. Pavlovich, A. Ari Hakimi, Gabriel Bromiński, James J. Hsieh, Andrzej Antczak, Tatiana Omelchenko, Jan Lubiński, Maciej Wiznerowicz, W. Marston Linehan, Christopher R. Kinsinger, Mathangi Thiagarajan, Emily S. Boja, Mehdi Mesri, Tara Hiltke, Ana I. Robles, Henry Rodriguez, Qian Jiang, David Fenyö, Bing Zhang, Li Ding, Eric E. Schadt, Arul M. Chinnaiyan, Zhen Zhang, Gilbert S. Omenn, Marcin Cieślik, Daniel W. Chan, Alexey I. Nesvizhskii, Pei Wang, Hui Zhang, A. Samad Hashimi, Alexander R. Pico, Alla Y. Karpova, Alyssa Charamut, Amanda G. Paulovich, Amy M. Perou, Anna Malovannaya, Annette Marrero-Oliveras, Anupriya Agarwal, Barbara Hindenach, Barbara L. Pruetz, Beom‐Jun Kim, Brian J. Druker, Chelsea J. Newton, Chet Birger, Corbin D. Jones, Cristina E. Tognon, D.R. Mani, Dana R. Valley, Daniel C. Rohrer

    Vydáno 2020
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  8. 8
    Pan-cancer proteogenomics connects oncogenic drivers to functional states

    Pan-cancer proteogenomics connects oncogenic drivers to functional states Autor Yize Li, Eduard Porta‐Pardo, Collin Tokheim, Matthew H. Bailey, Tomer M. Yaron, Vasileios Stathias, Yifat Geffen, Kathleen J. Imbach, Song Cao, Shankara Anand, Yo Akiyama, Wenke Liu, Matthew A. Wyczalkowski, Yizhe Song, Erik Storrs, Michael C. Wendl, Wubing Zhang, Mustafa Sibai, Victoria Ruiz‐Serra, Wen-Wei Liang, Nadezhda V. Terekhanova, Fernanda Martins Rodrigues, Karl R. Clauser, David I. Heiman, Qing Zhang, François Aguet, Anna Calinawan, Saravana M. Dhanasekaran, Chet Birger, Shankha Satpathy, Daniel Cui Zhou, Liang-Bo Wang, Jessika Baral, Jared L. Johnson, Emily M. Huntsman, Pietro Pugliese, Antonio Colaprico, Antonio Iavarone, Milan G. Chheda, Christopher J. Ricketts, David Fenyö, Samuel Payne, Henry Rodriguez, Ana I. Robles, Michael A. Gillette, Chandan Kumar‐Sinha, Alexander J. Lazar, Lewis C. Cantley, Gad Getz, Li Ding, Eunkyung An, Meenakshi Anurag, Jasmin Bavarva, Michael J. Birrer, Anna Calinawan, Michele Ceccarelli, Daniel W. Chan, Arul M. Chinnaiyan, Hanbyul Cho, Shrabanti Chowdhury, Marcin Cieślik, Felipe da Veiga Leprevost, Corbin Day, Marcin J. Domagalski, Yongchao Dou, Brian J. Druker, Nathan Edwards, Matthew J. Ellis, Myvizhi Esai Selvan, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Sara J.C. Gosline, Zeynep H. Gümüş, Tara Hiltke, Runyu Hong, Galen Hostetter, Yingwei Hu, Chen Huang, Emily M. Huntsman, Eric J. Jaehnig, Scott Jewel, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Iga Kołodziejczak, Jonathan T. Lei, Yuxing Liao, Caleb M. Lindgren, Tao Liu, Weiping Ma, Wilson McKerrow, Alexey I. Nesvizhskii, Chelsea J. Newton, Robert Oldroyd, Gilbert S. Omenn, Amanda G. Paulovich, Francesca Petralia, Boris Reva

    Vydáno 2023
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  9. 9
    Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation

    Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation Autor Yifat Geffen, Shankara Anand, Yo Akiyama, Tomer M. Yaron, Yizhe Song, Jared L. Johnson, Akshay Govindan, Özgün Babur, Yize Li, Emily M. Huntsman, Liang-Bo Wang, Chet Birger, David I. Heiman, Qing Zhang, Mendy Miller, Yosef E. Maruvka, Nicholas J. Haradhvala, Anna Calinawan, Saveliy Belkin, Alexander Kerelsky, Karl R. Clauser, Karsten Krug, Shankha Satpathy, Samuel Payne, D.R. Mani, Michael A. Gillette, Saravana M. Dhanasekaran, Mathangi Thiagarajan, Mehdi Mesri, Henry Rodriguez, Ana I. Robles, Steven A. Carr, Alexander J. Lazar, François Aguet, Lewis C. Cantley, Li Ding, Gad Getz, Eunkyung An, Meenakshi Anurag, Jasmin Bavarva, Michael J. Birrer, Özgün Babur, Song Cao, Michele Ceccarelli, Daniel W. Chan, Arul M. Chinnaiyan, Hanbyul Cho, Shrabanti Chowdhury, Marcin Cieślik, Antonio Colaprico, Steven A. Carr, Felipe da Veiga Leprevost, Corbin Day, Marcin J. Domagalski, Yongchao Dou, Brian J. Druker, Nathan Edwards, Matthew J. Ellis, David Fenyö, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Sara J.C. Gosline, Zeynep H. Gümüş, Tara Hiltke, Runyu Hong, Galen Hostetter, Yingwei Hu, Chen Huang, Antonio Iavarone, Eric J. Jaehnig, Scott Jewel, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Iga Kołodziejczak, Chandan Kumar‐Sinha, Karsten Krug, Jonathan T. Lei, Wen-Wei Liang, Yuxing Liao, Caleb M. Lindgren, Tao Liu, Wenke Liu, Weiping Ma, Wilson McKerrow, Mehdi Mesri, D.R. Mani, Alexey I. Nesvizhskii, Chelsea J. Newton, Robert Oldroyd, Gilbert S. Omenn, Amanda G. Paulovich, Francesca Petralia, Pietro Pugliese, Boris Reva, Karin Rodland, Kelly V. Ruggles, Dmitry Rykunov

    Vydáno 2023
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  10. 10
    Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin

    Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin Autor Wen-Wei Liang, Rita Jui-Hsien Lu, Reyka G. Jayasinghe, Steven M. Foltz, Eduard Porta‐Pardo, Yifat Geffen, Michael C. Wendl, Rossana Lazcano, Iga Kołodziejczak, Yizhe Song, Akshay Govindan, Elizabeth G. Demicco, Xiang Li, Yize Li, Sunantha Sethuraman, Samuel Payne, David Fenyö, Henry Rodriguez, Maciej Wiznerowicz, Hui Shen, D.R. Mani, Karin Rodland, Alexander J. Lazar, Ana I. Robles, Li Ding, François Aguet, Yo Akiyama, Eunkyung An, Shankara Anand, Meenakshi Anurag, Özgün Babur, Jasmin Bavarva, Chet Birger, Michael J. Birrer, Anna Calinawan, Lewis C. Cantley, Song Cao, Steve Carr, Michele Ceccarelli, Daniel Chan, Arul M. Chinnaiyan, Hanbyul Cho, Shrabanti Chowdhury, Marcin Cieślik, Karl R. Clauser, Antonio Colaprico, Daniel Cui Zhou, Felipe da Veiga Leprevost, Corbin Day, Saravana M. Dhanasekaran, Marcin J. Domagalski, Yongchao Dou, Brian J. Druker, Nathan Edwards, Matthew J. Ellis, Myvizhi Esai Selvan, Alicia Francis, Gad Getz, Michael A. Gillette, Tania Gonzalez Robles, Sara J.C. Gosline, Zeynep H. Gümüş, David I. Heiman, Tara Hiltke, Runyu Hong, Galen Hostetter, Yingwei Hu, Chen Huang, Emily M. Huntsman, Antonio Iavarone, Eric J. Jaehnig, Scott Jewel, Jiayi Ji, Wen Jiang, Jared L. Johnson, Lizabeth Katsnelson, Karen A. Ketchum, Karsten Krug, Chandan Kumar‐Sinha, Jonathan T. Lei, Yuxing Liao, Caleb M. Lindgren, Tao Liu, Wenke Liu, Weiping Ma, Fernanda Martins Rodrigues, Wilson H. McKerrow, Mehdi Mesri, Alexey I. Nesvizhskii, Chelsea J. Newton, Robert Oldroyd, Gilbert S. Omenn, Amanda G. Paulovich, Francesca Petralia, Pietro Pugliese, Boris Reva, Kelly V. Ruggles, Dmitry Rykunov, Shankha Satpathy, Sara R. Savage

    Vydáno 2023
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  11. 11
    Pan-cancer proteogenomics characterization of tumor immunity

    Pan-cancer proteogenomics characterization of tumor immunity Autor Francesca Petralia, Weiping Ma, Tomer M. Yaron, Francesca Pia Caruso, Nicole Tignor, Joshua M. Wang, Daniel Charytonowicz, Jared L. Johnson, Emily M. Huntsman, Giacomo B. Marino, Anna Calinawan, John Erol Evangelista, Myvizhi Esai Selvan, Shrabanti Chowdhury, Dmitry Rykunov, Azra Krek, Xiaoyu Song, Berk Turhan, Karen E. Christianson, David A. Lewis, Eden Z. Deng, Daniel Clarke, Jeffrey R. Whiteaker, Jacob J. Kennedy, Lei Zhao, Rossana Lazcano Segura, Harsh Vardhan Batra, Maria Gabriela Raso, Edwin R. Parra, Rama Soundararajan, Ximing Tang, Yize Li, Xinpei Yi, Shankha Satpathy, Ying Wang, Maciej Wiznerowicz, Tania J González-Robles, Antonio Iavarone, Sara J.C. Gosline, Boris Reva, Ana I. Robles, Alexey I. Nesvizhskii, D.R. Mani, Michael A. Gillette, Robert J. Klein, Marcin Cieślik, Bing Zhang, Amanda G. Paulovich, Robert Sebra, Zeynep H. Gümüş, Galen Hostetter, David Fenyö, Gilbert S. Omenn, Lewis C. Cantley, Avi Ma’ayan, Alexander J. Lazar, Michele Ceccarelli, Pei Wang, Jennifer G. Abelin, François Aguet, Yo Akiyama, Eunkyung An, Shankara Anand, Meenakshi Anurag, Özgün Babur, Jasmin Bavarva, Chet Birger, Michael J. Birrer, Song Cao, Steven A. Carr, Daniel W. Chan, Arul M. Chinnaiyan, Hanbyul Cho, Karl R. Clauser, Antonio Colaprico, Daniel Cui Zhou, Felipe da Veiga Leprevost, Corbin Day, Saravana M. Dhanasekaran, Li Ding, Marcin J. Domagalski, Yongchao Dou, Brian J. Druker, Nathan Edwards, Matthew J. Ellis, Steven M. Foltz, Alicia Francis, Yifat Geffen, Gad Getz, David I. Heiman, Runyu Hong, Yingwei Hu, Chen Huang, Eric J. Jaehnig, Scott D. Jewell, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Iga Kołodziejczak

    Vydáno 2024
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