Search Results - Shengcheng Dong

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  1. 1
    Predicting functional variants in enhancer and promoter elements using RegulomeDB

    Predicting functional variants in enhancer and promoter elements using RegulomeDB by Shengcheng Dong, Alan P. Boyle

    Published 2019
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  2. 2
    Predicting the effects of SNPs on transcription factor binding affinity

    Predicting the effects of SNPs on transcription factor binding affinity by Sierra S. Nishizaki, Natalie Ng, Shengcheng Dong, Robert S. Porter, Cody Morterud, C. Bruce Williams, Courtney Asman, Jessica A. Switzenberg, Alan P. Boyle

    Published 2019
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  3. 3
    Annotating and prioritizing human non-coding variants with RegulomeDB v.2

    Annotating and prioritizing human non-coding variants with RegulomeDB v.2 by Shengcheng Dong, Nanxiang Zhao, Emma Spragins, Meenakshi S. Kagda, Mingjie Li, Pedro Assis, Otto Jolanki, Yunhai Luo, J. Michael Cherry, Alan P. Boyle, Benjamin C. Hitz

    Published 2023
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  4. 4
    Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay

    Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay by Dustin Shigaki, Orit Adato, Aashish N. Adhikari, Shengcheng Dong, Alex Hawkins‐Hooker, Fumitaka Inoue, Tamar Juven‐Gershon, Henry Kenlay, Beth Martin, Ayoti Patra, Dmitry Penzar, Max Schubach, Chenling Xiong, Zhongxia Yan, Alan P. Boyle, Anat Kreimer, Ivan V. Kulakovskiy, John E. Reid, Ron Unger, Nir Yosef, Jay Shendure, Nadav Ahituv, Martin Kircher, M Beer

    Published 2019
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  5. 5
    CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

    CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods by Shantanu Jain, Constantina Bakolitsa, Steven E. Brenner, Predrag Radivojac, John Moult, Susanna Repo, Roger A. Hoskins, Gaia Andreoletti, Daniel Barsky, Ajithavalli Chellapan, Hoyin Chu, Navya Dabbiru, Naveen K. Kollipara, Melissa Ly, Andrew J. Neumann, Lipika R. Pal, Eric Odell, Gaurav Pandey, Robin C. Peters-Petrulewicz, Rajgopal Srinivasan, Stephen F. Yee, Sri Jyothsna Yeleswarapu, Maya Zuhl, Ogün Adebalı, Ayoti Patra, M Beer, Raghavendra Hosur, Jian Peng, Brady Bernard, M. Victoria Berry, Shengcheng Dong, Alan P. Boyle, Aashish N. Adhikari, Jingqi Chen, Zhiqiang Hu, Robert Wang, Yaqiong Wang, Max J. Miller, Yanran Wang, Yana Bromberg, Paola Turina, Emidio Capriotti, James J. Han, Kıvılcım Öztürk, Hannah Carter, Giulia Babbi, Samuele Bovo, Pietro Di Lena, Pier Luigi Martelli, Castrense Savojardo, Rita Casadio, Melissa Cline, Greet De Baets, Sandra Bonache, Orland Dı́ez, Sara Gutiérrez‐Enríquez, Alejandro Fernández, Gemma Montalban, Lars Ootes, Selen Özkan, Natàlia Padilla, Casandra Riera, Xavier de la Cruz, Mark Diekhans, Peter J. Huwe, Qiong Wei, Qifang Xu, Roland L. Dunbrack, Valer Gotea, Laura Elnitski, Gennady Margolin, Piero Fariselli, Ivan V. Kulakovskiy, Vsevolod J. Makeev, Dmitry Penzar, Ilya E. Vorontsov, Alexander V. Favorov, Julia Forman, Marcia A. Hasenahuer, Marı́a Silvina Fornasari, Gustavo Parisi, Žiga Avsec, Muhammed Hasan Çelik, Thi Yen Duong Nguyen, Julien Gagneur, Fangyuan Shi, Matthew D. Edwards, Yuchun Guo, Kevin Tian, Haoyang Zeng, David K. Gifford, Jonathan Göke, Jan Zaucha, Julian Gough, Graham R. S. Ritchie, Adam Frankish, Jonathan M. Mudge, Jennifer Harrow, Erin L. Young, Yao Yu

    Published 2024
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