Resultats de la cerca - Shanrong Zhao

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  1. 1
    A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification

    A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification per Shanrong Zhao, Baohong Zhang

    Publicat 2015
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  2. 2
    Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols

    Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols per Shanrong Zhao, Ye Zhan, Robert V. Stanton

    Publicat 2020
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  3. 3
    Evaluation and comparison of computational tools for RNA-seq isoform quantification

    Evaluation and comparison of computational tools for RNA-seq isoform quantification per Chi Zhang, Baohong Zhang, Lih‐Ling Lin, Shanrong Zhao

    Publicat 2017
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  4. 4
    Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion

    Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion per Shanrong Zhao, Ying Zhang, Ramya Gamini, Baohong Zhang, David von Schack

    Publicat 2018
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  5. 5
    Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

    Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells per Shanrong Zhao, Wai‐Ping Fung‐Leung, Anton Bittner, Karen Ngo, Xuejun Liu

    Publicat 2014
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  6. 6
    Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing

    Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing per Shanrong Zhao, Kurt Prenger, Lance Smith, Thomas Messina, Hongtao Fan, Edward P. Jaeger, S. A. Stephens

    Publicat 2013
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  7. 7
    Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap

    Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap per Shanrong Zhao, Ying Zhang, William Gordon, Jie Quan, Hualin Simon Xi, Sarah Du, David von Schack, Baohong Zhang

    Publicat 2015
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  8. 8
    QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization

    QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization per Shanrong Zhao, Xi Li, Jie Quan, Hualin Simon Xi, Ying Zhang, David von Schack, Michael S. Vincent, Baohong Zhang

    Publicat 2016
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  9. 9
    QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing

    QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing per Shanrong Zhao, William Gordon, Sarah Du, Chi Zhang, Wen He, Xi Li, Sachin Mathur, Michael Agostino, Theresa Paradis, David von Schack, Michael S. Vincent, Baohong Zhang

    Publicat 2017
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  10. 10
    Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data

    Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data per Aaron Smith, Jonathan R. Walsh, John M. Long, Craig B. Davis, Peter Henstock, Martin R. Hodge, Mateusz Maciejewski, Xinmeng Jasmine Mu, Stephen Ra, Shanrong Zhao, Daniel Ziemek, Charles K. Fisher

    Publicat 2020
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  11. 11
    Single-cell analyses of Crohn’s disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions

    Single-cell analyses of Crohn’s disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions per Natália Jaeger, Ramya Gamini, Marina Cella, Jorge Schettini, Mattia Bugatti, Shanrong Zhao, Charles V. Rosadini, Ekaterina Esaulova, Blanda Di Luccia, Baylee Kinnett, William Vermi, Maxim N. Artyomov, Thomas A. Wynn, Ramnik J. Xavier, Scott A. Jelinsky, Marco Colonna

    Publicat 2021
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  12. 12
    RORγt and RORα signature genes in human Th17 cells

    RORγt and RORα signature genes in human Th17 cells per Glenda Castro, Xuejun Liu, Karen Ngo, Aimee De Leon-Tabaldo, Shanrong Zhao, Rosa Luna-Roman, Jingxue Yu, Tinghua Cao, Robert M. Kuhn, Patrick Wilkinson, Krystal Herman, Marina I. Nelen, Jonathan M. Blevitt, Xiaohua Xue, Anne M. Fourie, Wai‐Ping Fung‐Leung

    Publicat 2017
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  13. 13
    The Type I Interferon Signature Reflects Multiple Phenotypic and Activity Measures in Dermatomyositis

    The Type I Interferon Signature Reflects Multiple Phenotypic and Activity Measures in Dermatomyositis per Mika M. Tabata, Luqman Mushila Hodgkinson, Tiffany Wu, Shufeng Li, Christine Huard, Shanrong Zhao, Donald Bennett, Jillian G. Johnson, Cassandra A. Tierney, Wen He, Janet E. Buhlmann, Karen Page, Kristen Johnson, Livia Casciola‐Rosen, Leland W.K. Chung, Kavita Y. Sarin, David Fiorentino

    Publicat 2023
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  14. 14
    Subsets of ILC3−ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

    Subsets of ILC3−ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues per Marina Cella, Ramya Gamini, Cristiane Sécca, Patrick L. Collins, Shanrong Zhao, Vincent Peng, Michelle L. Robinette, Jorge Schettini, Konstantin Zaitsev, William Gordon, Jennifer K. Bando, Kentaro Yomogida, Victor S. Cortez, Catrina C. Fronick, Robert S. Fulton, Lih-Ling Lin, Susan Gilfillan, Richard A. Flavell, Liang Shan, Maxim N. Artyomov, Michael Bowman, Eugene M. Oltz, Scott A. Jelinsky, Marco Colonna

    Publicat 2019
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