Resultados de Procura por Autor :: APM

1

Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss por Pavel Avdeyev, Shuai Jiang, Sergey Aganezov, Fei Hu, Max A. Alekseyev

Publicado 2016

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2

Jasmine: Population-scale structural variant comparison and analysis por Melanie Kirsche, G. G. Prabhu, Rachel M. Sherman, Bohan Ni, Sergey Aganezov, Michael C. Schatz

Publicado 2021

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3

Jasmine and Iris: population-scale structural variant comparison and analysis por Melanie Kirsche, Gautam Prabhu, Rachel M. Sherman, Bohan Ni, Alexis Battle, Sergey Aganezov, Michael C. Schatz

Publicado 2023

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4

MethPhaser: methylation-based long-read haplotype phasing of human genomes por Yilei Fu, Sergey Aganezov, Medhat Mahmoud, John Beaulaurier, Sissel Juul, Todd J. Treangen, Fritz J. Sedlazeck

Publicado 2024

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5

Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing por Michael Alonge, Ludivine Lebeigle, Melanie Kirsche, Sergey Aganezov, Xingang Wang, Zachary B. Lippman, Michael C. Schatz, Sebastian Soyk

Publicado 2021

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6

Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing por Michael Alonge, Ludivine Lebeigle, Melanie Kirsche, Katie Jenike, Shujun Ou, Sergey Aganezov, Xingang Wang, Zachary B. Lippman, Michael C. Schatz, Sebastian Soyk

Publicado 2022

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7

The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure por Hsiang-Chen Chou, Kuhulika Bhalla, Osama El Demerdesh, Olaf Klingbeil, Kaarina Hanington, Sergey Aganezov, Peter Andrews, Habeeb Alsudani, Kenneth Chang, Christopher R. Vakoc, Michael C. Schatz, W. Richard McCombie, Bruce Stillman

Publicado 2021

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8

Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing por Sergey Aganezov, Sara Goodwin, Rachel M. Sherman, Fritz J. Sedlazeck, Gayatri Arun, Sonam Bhatia, Isac Lee, Melanie Kirsche, Robert Wappel, Melissa Kramer, Karen Kostroff, David L. Spector, Winston Timp, W. Richard McCombie, Michael C. Schatz

Publicado 2020

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9

A diploid assembly-based benchmark for variants in the major histocompatibility complex por Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate, Michael C. Schatz, Chunlin Xiao, William J. Rowell, Charles Markello, Jesse Farek, Fritz J. Sedlazeck, Vikas Bansal, Byunggil Yoo, Neil Miller, Xin Zhou, Andrew Carroll, Álvaro Martínez Barrio, Marc Salit, Tobias Marschall, Alexander Dilthey, Justin M. Zook

Publicado 2020

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10

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies por Robert M. Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten Reijnders, Romain Feron, Sèverine Bérard, Phillip George, Matthew W. Hahn, Paul Howell, Maryam Kamali, Sergey Koren, Daniel Lawson, G. Maslen, Ashley Peery, Adam M. Phillippy, Maria V. Sharakhova, Éric Tannier, Maria Unger, Simo V. Zhang, Max A. Alekseyev, Nora J. Besansky, Cédric Chauve, Scott Emrich, Igor V. Sharakhov

Publicado 2020

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11

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads por Ayse Keskus, Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky, Ataberk Donmez, Lisa A. Lansdon, Isabel Rodriguez, Jimin Park, Yuelin Liu, Xiwen Cui, Joshua Gardner, Brandy McNulty, Samuel Sacco, Jyoti Shetty, Yongmei Zhao, Bao Tran, Giuseppe Narzisi, Adrienne Helland, Daniel E. Cook, Pi-Chuan Chang, Alexey Kolesnikov, Andrew Carroll, Erin K. Molloy, Irina Pushel, Erin Guest, Tomi Pastinen, Kishwar Shafin, Karen H. Miga, Salem Malikić, Chi-Ping Day, Nicolas Robine, S. Cenk Şahinalp, Michael Dean, Midhat S. Farooqi, Benedict Paten, Mikhail Kolmogorov

Publicado 2024

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12

A complete reference genome improves analysis of human genetic variation por Sergey Aganezov, Stephanie M. Yan, Daniela C. Soto, Melanie Kirsche, Samantha Zarate, Pavel Avdeyev, Dylan J. Taylor, Kishwar Shafin, Alaina Shumate, Chunlin Xiao, Justin Wagner, Jennifer McDaniel, Nathan D. Olson, Michael Sauria, Mitchell R. Vollger, Arang Rhie, Melissa Meredith, Skylar Martin, Joyce Lee, Sergey Koren, Jeffrey Rosenfeld, Benedict Paten, Ryan M. Layer, Chen-Shan Chin, Fritz J. Sedlazeck, Nancy F. Hansen, Danny E. Miller, Adam M. Phillippy, Karen H. Miga, Rajiv C. McCoy, Megan Y. Dennis, Justin M. Zook, Michael C. Schatz

Publicado 2021

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13

A complete reference genome improves analysis of human genetic variation por Sergey Aganezov, Stephanie M. Yan, Daniela C. Soto, Melanie Kirsche, Samantha Zarate, Pavel Avdeyev, Dylan J. Taylor, Kishwar Shafin, Alaina Shumate, Chunlin Xiao, Justin Wagner, Jennifer McDaniel, Nathan D. Olson, Michael Sauria, Mitchell R. Vollger, Arang Rhie, Melissa Meredith, Skylar Martin, Joyce Lee, Sergey Koren, Jeffrey Rosenfeld, Benedict Paten, Ryan M. Layer, Chen-Shan Chin, Fritz J. Sedlazeck, Nancy F. Hansen, Danny E. Miller, Adam M. Phillippy, Karen H. Miga, Rajiv C. McCoy, Megan Y. Dennis, Justin M. Zook, Michael C. Schatz

Publicado 2022

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14

Benchmarking challenging small variants with linked and long reads por Justin Wagner, Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stanković, Vladimir Kovačević, Byunggil Yoo, Neil Miller, Jeffrey Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael C. Schatz, Giuseppe Narzisi, Marta Byrska-Bishop, Wayne E. Clarke, Uday S. Evani, Charles Markello, Kishwar Shafin, Xin Zhou, Arend Sidow, Vikas Bansal, Peter Ebert, Tobias Marschall, Peter M. Lansdorp, Vincent C. T. Hanlon, Carl-Adam Mattsson, Álvaro Martínez Barrio, Ian T. Fiddes, Chunlin Xiao, Arkarachai Fungtammasan, Chen-Shan Chin, Aaron M. Wenger, William J. Rowell, Fritz J. Sedlazeck, Andrew Carroll, Marc Salit, Justin M. Zook

Publicado 2022

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15

$The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models$

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models por Joel Rozowsky, Jiahao Gao, Beatrice Borsari, Yucheng Yang, Timur R. Galeev, Gamze Gürsoy, Charles B. Epstein, Kun Xiong, Jinrui Xu, Tianxiao Li, Jason Liu, Keyang Yu, Ana Berthel, Zhanlin Chen, Fábio C. P. Navarro, Maxwell S. Sun, James C. Wright, Justin Chang, Christopher JF Cameron, Noam Shoresh, Elizabeth Gaskell, Jörg Drenkow, Jessika Adrian, Sergey Aganezov, François Aguet, Gabriela Balderrama-Gutierrez, Samridhi Banskota, Guillermo Barreto Corona, Sora Chee, Surya B. Chhetri, Gabriel Conte Cortez Martins, Cassidy Danyko, Carrie Davis, Daniel Farid, Nina Farrell, Idan Gabdank, Yoel Gofin, David U. Gorkin, Mengting Gu, Vivian Hecht, Benjamin C. Hitz, Robbyn Issner, Yunzhe Jiang, Melanie Kirsche, Xiangmeng Kong, Bonita R. Lam, Shantao Li, Bian Li, Xiqi Li, Khine Lin, Ruibang Luo, Mark Mackiewicz, Ran Meng, Jill E. Moore, Jonathan M. Mudge, Nicholas Nelson, Chad Nusbaum, Ioann Popov, Henry Pratt, Yunjiang Qiu, Srividya Ramakrishnan, Joe Raymond, Leonidas Salichos, Alexandra Scavelli, Jacob Schreiber, Fritz J. Sedlazeck, Lei Hoon See, Rachel M. Sherman, Xu Shi, Minyi Shi, Cricket A. Sloan, J. Seth Strattan, Zhen Tan, Forrest Y. Tanaka, Anna Vlasova, Jun Wang, Jonathan M. Werner, Brian A. Williams, Min Xu, Chengfei Yan, Yu Lu, Christopher Zaleski, Jing Zhang, Kristin Ardlie, J. Michael Cherry, Eric M. Mendenhall, William Stafford Noble, Zhiping Weng, Morgan E. Levine, Alexander Dobin, B Wold, A Mortazavi, Bing Ren, Jesse Gillis, R Myers, M Snyder, Jyoti S. Choudhary, Aleksandar Milosavljevic, Michael C. Schatz, B Bernstein

Publicado 2023

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16

Highly evolvable malaria vectors: The genomes of 16 <i>Anopheles</i> mosquitoes por Daniel E. Neafsey, Robert M. Waterhouse, Mohammad Reza Abai, Sergey Aganezov, Max A. Alekseyev, James E. Allen, James Amon, Bruno Arcà, Peter Arensburger, Gleb N. Artemov, Lauren A. Assour, Hamidreza Basseri, Aaron Berlin, Bruce W. Birren, Stéphanie Blandin, Andrew I. Brockman, Thomas R. Burkot, Austin Burt, Clara S. Chan, Cédric Chauve, Joanna C. Chiu, Mikkel Christensen, Carlo Costantini, Victoria L M Davidson, Elena Deligianni, Tania Dottorini, Vicky Dritsou, Stacey B. Gabriel, Wamdaogo M. Guelbéogo, A. Brantley Hall, Mira V. Han, Thaung Hlaing, Daniel Hughes, Adam M. Jenkins, Xiaofang Jiang, Irwin Jungreis, Evdoxia G. Kakani, Maryam Kamali, Petri Kemppainen, Ryan Kennedy, Ioannis Kirmitzoglou, Lizette L. Koekemoer, Njoroge Laban, Nicholas Langridge, Mara Lawniczak, Manolis Lirakis, Neil F. Lobo, Ernesto Lowy, Robert M. MacCallum, Chunhong Mao, G. Maslen, Charles Mbogo, Jennifer B. McCarthy, Kristin Michel, Sara N. Mitchell, Wendy Moore, Katherine A. Murphy, Anastasia N. Naumenko, Tony Nolan, Eva Maria Novoa, Samantha M. O’Loughlin, Chioma Oringanje, Mohammad Ali Oshaghi, Nazzy Pakpour, Philippos Aris Papathanos, Ashley Peery, Michael Povelones, Anil Prakash, David P. Price, Ashok Rajaraman, Lisa Reimer, David C. Rinker, Antonis Rokas, Tanya L. Russell, N’Falé Sagnon, Maria V. Sharakhova, Terrance Shea, Felipe A. Simão, Frédéric Simard, Michel A. Slotman, Pradya Somboon, V. N. Stegniy, Cláudio J. Struchiner, Gregg W.C. Thomas, Marta Tojo, Pantelis Topalis, José M. C. Tubío, Maria Unger, John Vontas, Catherine Walton, Craig S. Wilding, Judith H. Willis, Yi-Chieh Wu, Guiyun Yan, Evgeny M. Zdobnov, Xiaofan Zhou, Flaminia Catteruccia, George K. Christophides, Frank H. Collins, Robert S. Cornman

Publicado 2014

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