Search Results - Scott Durkin

Refine Results
  1. 1
    RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes

    RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes by Daniel H. Haft, Azat Badretdin, George Coulouris, Michael DiCuccio, A. Scott Durkin, Eric Jovenitti, Wenjun Li, Megdelawit Mersha, Kathleen O’Neill, Joël Virothaisakun, Françoise Thibaud‐Nissen

    Published 2023
    Get full text
    Artigo
    Save to List
    Saved in:
  2. 2
    Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomics of a T4-Related Bacteriophage

    Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomics of a T4-Related Bacteriophage by Eric S. Miller, John F. Heidelberg, Jonathan A. Eisen, William Nelson, A. Scott Durkin, Ann Ciecko, Tamara V. Feldblyum, Owen White, Ian T. Paulsen, William C. Nierman, Lee Jong, Bridget Szczypinski, Claire M. Fraser

    Published 2003
    Get full text
    Artigo
    Save to List
    Saved in:
  3. 3
    Pathogenomic Inference of Virulence-Associated Genes in Leptospira interrogans

    Pathogenomic Inference of Virulence-Associated Genes in Leptospira interrogans by Jason Lehmann, Derrick E. Fouts, Daniel H. Haft, Anthony P. Cannella, Jessica N. Ricaldi, Lauren Brinkac, Derek M. Harkins, Scott Durkin, Ravi Sanka, Granger Sutton, Angelo Moreno, Joseph M. Vinetz, Michael A. Matthias

    Published 2013
    Get full text Get full text
    Artigo
    Save to List
    Saved in:
  4. 4
    Genome sequence of <i>Synechococcus</i> CC9311: Insights into adaptation to a coastal environment

    Genome sequence of <i>Synechococcus</i> CC9311: Insights into adaptation to a coastal environment by Brian Palenik, Qinghu Ren, Christopher L. Dupont, Garry S. A. Myers, John F. Heidelberg, Jonathan H. Badger, Ramana Madupu, William Nelson, Lauren Brinkac, Robert J. Dodson, A. Scott Durkin, Sean C. Daugherty, Stephen A Sullivan, Hoda Khouri, Yasmin A. Mohamoud, Rebecca Halpin, Ian T. Paulsen

    Published 2006
    Get full text
    Artigo
    Save to List
    Saved in:
  5. 5
    Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901

    Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901 by Martin Wu, Qinghu Ren, A. Scott Durkin, Sean C. Daugherty, Lauren Brinkac, Robert J. Dodson, Ramana Madupu, Steven A. Sullivan, James F. Kolonay, William Nelson, Luke J. Tallon, Kristine Jones, Luke E. Ulrich, Juan Miguel González Grau, Igor B. Zhulin, Frank T. Robb, Jonathan A. Eisen

    Published 2005
    Get full text Get full text
    Artigo
    Save to List
    Saved in:
  6. 6
    Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential

    Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential by Carl J. Yeoman, Süleyman Yıldırım, Susan M. Thomas, A. Scott Durkin, Manolito Torralba, Granger Sutton, Christian Buhay, Yan Ding, Shannon Dugan-Rocha, Donna M. Muzny, Xiang Qin, Richard A. Gibbs, Steven R. Leigh, Rebecca M. Stumpf, Bryan A. White, Sarah K. Highlander, William Nelson, Brenda A. Wilson

    Published 2010
    Get full text Get full text
    Artigo
    Save to List
    Saved in:
  7. 7
    RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation

    RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation by Wenjun Li, Kathleen O’Neill, Daniel H. Haft, Michael DiCuccio, Vyacheslav Chetvernin, Azat Badretdin, George Coulouris, Farideh Chitsaz, Myra K. Derbyshire, A. Scott Durkin, Noreen R. Gonzales, Marc Gwadz, Christopher J. Lanczycki, James S. Song, Narmada Thanki, Jiyao Wang, Roxanne A. Yamashita, Mingzhang Yang, Chanjuan Zheng, Aron Marchler‐Bauer, Françoise Thibaud‐Nissen

    Published 2020
    Get full text Get full text
    Artigo
    Save to List
    Saved in:
  8. 8
    Evolution of sensory complexity recorded in a myxobacterial genome

    Evolution of sensory complexity recorded in a myxobacterial genome by Barry S. Goldman, William C. Nierman, D Kaiser, Steven Slater, A. Scott Durkin, Jonathan A. Eisen, Catherine M. Ronning, W. Brad Barbazuk, Mary Blanchard, Christopher M. Field, C Halling, Gregory Hinkle, O. Iartchuk, Sun Kim, Chris Mackenzie, Ramana Madupu, Nancy Miller, Alla Shvartsbeyn, Steven A. Sullivan, Mark D. Vaudin, Roger C. Wiegand, Heidi B. Kaplan

    Published 2006
    Get full text
    Artigo
    Save to List
    Saved in:
  9. 9
    Genome of the pathogen <i>Porphyromonas gingivalis</i> recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

    Genome of the pathogen <i>Porphyromonas gingivalis</i> recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform by Jeffrey S. McLean, Mary‐Jane Lombardo, Michael G. Ziegler, Mark Novotny, Joyclyn Yee-Greenbaum, Jonathan H. Badger, Glenn Tesler, Sergey Nurk, Valery M. Lesin, Daniel Brami, Adam P. Hall, Anna Edlund, Lisa Zeigler Allen, Scott Durkin, Sharon L. Reed, Francesca J. Torriani, Kenneth H. Nealson, Pavel A. Pevzner, Robert Friedman, J. Craig Venter, Roger S. Lasken

    Published 2013
    Get full text Get full text
    Artigo
    Save to List
    Saved in:
  10. 10
    Complete Genome Sequence of the Oral Pathogenic Bacterium <i>Porphyromonas gingivalis</i> Strain W83

    Complete Genome Sequence of the Oral Pathogenic Bacterium <i>Porphyromonas gingivalis</i> Strain W83 by William Nelson, Robert Fleischmann, Robert T. DeBoy, Ian T. Paulsen, Derrick E. Fouts, Jonathan A. Eisen, Sean C. Daugherty, Robert J. Dodson, A. Scott Durkin, Michelle Gwinn, Daniel H. Haft, James F. Kolonay, William Nelson, Tanya Mason, Luke J. Tallon, Jessica Gray, David Granger, Hervé Tettelin, Hong Dong, Jamie L. Galvin, Margaret J. Duncan, Floyd E. Dewhirst, Claire M. Fraser

    Published 2003
    Get full text
    Artigo
    Save to List
    Saved in:
  11. 11
    Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant <i>Staphylococcus aureus</i> Strain and a Biofilm-Producing Methicillin-Resistant <i>Staphylococcus epidermidis</i> Strain

    Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant <i>Staphylococcus aureus</i> Strain and a Biofilm-Producing Me... by Steven R. Gill, Derrick E. Fouts, Gordon L. Archer, Emmanuel F. Mongodin, Robert T. DeBoy, Jacques Ravel, Ian T. Paulsen, James F. Kolonay, Lauren Brinkac, Mauren Beanan, Robert J. Dodson, Sean C. Daugherty, Ramana Madupu, Samuel V. Angiuoli, A. Scott Durkin, Daniel H. Haft, Jessica Vamathevan, Hoda Khouri, Terry Utterback, Chris Lee, George Dimitrov, Lingxia Jiang, Haiying Qin, Jan Weidman, Kevin Tran, Kathy Kang, Ioana R. Hance, William Nelson, Claire M. Fraser

    Published 2005
    Get full text
    Artigo
    Save to List
    Saved in:
  12. 12
    Structural flexibility in the <i>Burkholderia mallei</i> genome

    Structural flexibility in the <i>Burkholderia mallei</i> genome by William C. Nierman, David DeShazer, Sun Kim, Hervé Tettelin, William Nelson, Tamara V. Feldblyum, Ricky L. Ulrich, Catherine M. Ronning, Lauren Brinkac, Sean C. Daugherty, Tanja Davidsen, Robert T. DeBoy, George Dimitrov, Robert J. Dodson, A. Scott Durkin, Michelle Gwinn, Daniel H. Haft, Hoda Khouri, James F. Kolonay, Ramana Madupu, Yasmin Mohammoud, William Nelson, Diana Radune, Claudia Mabel Terenti Romero, Saul Sarria, Jeremy Selengut, Christine Shamblin, Steven A. Sullivan, Owen White, Yan Yu, Nikhat Zafar, Li‐Wei Zhou, Claire M. Fraser

    Published 2004
    Get full text
    Artigo
    Save to List
    Saved in:
  13. 13
    The complete genome sequence of <i>Chlorobium tepidum</i> TLS, a photosynthetic, anaerobic, green-sulfur bacterium

    The complete genome sequence of <i>Chlorobium tepidum</i> TLS, a photosynthetic, anaerobic, green-sulfur bacterium by Jonathan A. Eisen, William Nelson, Ian T. Paulsen, John F. Heidelberg, Martin Wu, Robert J. Dodson, Robert T. DeBoy, Michelle Gwinn, William Nelson, Daniel H. Haft, Erin K. Hickey, Jeremy Peterson, A. Scott Durkin, James L. Kolonay, Fan Yang, Ingeborg Holt, Lowell Umayam, Tanya Mason, Michael Brenner, Terrance Shea, Debbie S. Parksey, William C. Nierman, Tamara V. Feldblyum, Cheryl L. Hansen, M. Brook Craven, Diana Radune, Jessica Vamathevan, Hoda Khouri, Owen White, Tanja M. Gruber, Karen A. Ketchum, J. Craig Venter, Hervé Tettelin, Donald A. Bryant, Claire M. Fraser

    Published 2002
    Get full text
    Artigo
    Save to List
    Saved in:
  14. 14
    Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath)

    Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath) by Naomi Ward, Øivind Larsen, James Sakwa, Live J. Bruseth, Hoda Khouri, A. Scott Durkin, George Dimitrov, Lingxia Jiang, David J. Scanlan, Katherine H. Kang, Matt Lewis, William Nelson, Barbara A. Methé, Martin Wu, John F. Heidelberg, Ian T. Paulsen, Derrick E. Fouts, Jacques Ravel, Hervé Tettelin, Qinghu Ren, Tim Read, Robert T. DeBoy, R. Seshadri, Steven L. Salzberg, Harald B. Jensen, Nils Kåre Birkeland, William Nelson, Robert J. Dodson, Svenn Helge Grindhaug, Ingeborg Holt, Ingvar Eidhammer, Inge Jonasen, Susan E. Vanaken, Terry Utterback, Tamara V. Feldblyum, Claire M. Fraser, Johan R. Lillehaug, Jonathan A. Eisen

    Published 2004
    Get full text Get full text
    Artigo
    Save to List
    Saved in:
  15. 15
    Complete genome sequence of <i>Caulobacter crescentus</i>

    Complete genome sequence of <i>Caulobacter crescentus</i> by William C. Nierman, Tamara V. Feldblyum, Michael T. Laub, Ian T. Paulsen, William Nelson, Jonathan A. Eisen, John F. Heidelberg, M.R. Alley, Noriko Ohta, Janine R. Maddock, Isabel Potocka, William Nelson, Austin Newton, Craig Stephens, Nikhil Phadke, Bert Ely, Robert T. DeBoy, Robert J. Dodson, A. Scott Durkin, Michelle Gwinn, Daniel H. Haft, James F. Kolonay, John Smit, M. Brook Craven, Hoda Khouri, Jyoti Shetty, Kristi Berry, Teresa R. Utterback, Kevin Tran, Alex M. Wolf, Jessica Vamathevan, Maria D. Ermolaeva, Owen White, Steven L. Salzberg, J. Craig Venter, Lucy Shapiro, Claire M. Fraser

    Published 2001
    Get full text
    Artigo
    Save to List
    Saved in:
  16. 16
    The Complete Genome of Teredinibacter turnerae T7901: An Intracellular Endosymbiont of Marine Wood-Boring Bivalves (Shipworms)

    The Complete Genome of Teredinibacter turnerae T7901: An Intracellular Endosymbiont of Marine Wood-Boring Bivalves (Shipworms) by Joyce C. Yang, Ramana Madupu, A. Scott Durkin, Nathan A. Ekborg, Chandra Sekhar Pedamallu, Jessica B. Hostetler, Diana Radune, Bradley Toms, Bernard Henrissat, Pedro M. Coutinho, Sandra Schwarz, Lauren Field, Amaro E. Trindade‐Silva, Carlos A. G. Soares, Sherif I. Elshahawi, Amro Hanora, Eric W. Schmidt, Margo G. Haygood, János Pósfai, Jack S. Benner, Catherine L. Madinger, John Nove, Brian P. Anton, Kshitiz Chaudhary, Jeremy M. Foster, Alex Holman, Sanjay Kumar, Philip A. Lessard, Yvette A. Luyten, Barton E. Slatko, Nicole Wood, Bo Wu, Max Teplitski, Joseph D. Mougous, Naomi Ward, Jonathan A. Eisen, Jonathan H. Badger, Daniel L. Distel

    Published 2009
    Get full text Get full text
    Artigo
    Save to List
    Saved in:
  17. 17
    Comparison of the genome of the oral pathogen <i>Treponema denticola</i> with other spirochete genomes

    Comparison of the genome of the oral pathogen <i>Treponema denticola</i> with other spirochete genomes by R. Seshadri, Garry S. A. Myers, Hervé Tettelin, Jonathan A. Eisen, John F. Heidelberg, Robert J. Dodson, Tanja M. Davidsen, Robert T. DeBoy, Derrick E. Fouts, Dan H. Haft, Jeremy Selengut, Qinghu Ren, Lauren Brinkac, Ramana Madupu, Jamie Kolonay, Scott Durkin, Sean C. Daugherty, Jyoti Shetty, Alla Shvartsbeyn, Elizabeth Gebregeorgis, Keita Geer, Getahun Tsegaye, Joel A. Malek, Bola Ayodeji, S. Shatsman, Michael P. McLeod, David Šmajs, Jerrilyn K. Howell, Sangita Pal, Anita G. Amin, Pankaj Vashisth, Thomas Z. McNeill, Xiang Qin, Erica Sodergren, Ernesto Baca, George M. Weinstock, Steven J. Norris, Claire M. Fraser, Ian T. Paulsen

    Published 2004
    Get full text
    Artigo
    Save to List
    Saved in:
  18. 18
    Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V<i>Streptococcus agalactiae</i>

    Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V<i>Streptococcus agalactiae</i> by Hervé Tettelin, Vega Masignani, Michael J. Cieslewicz, Jonathan A. Eisen, Scott N. Peterson, Michael R. Wessels, Ian T. Paulsen, William Nelson, Immaculada Margarit, Timothy D. Read, Lawrence C. Madoff, Alex M. Wolf, Maureen J. Beanan, Lauren Brinkac, Sean C. Daugherty, Robert T. DeBoy, A. Scott Durkin, James F. Kolonay, Ramana Madupu, Matthew R. Lewis, Diana Radune, Nadezhda B. Fedorova, David J. Scanlan, Hoda Khouri, Stephanie Mulligan, Heather A. Carty, Robin T. Cline, Susan E. Van Aken, John Gill, Maria Scarselli, Marirosa Mora, Emilia Tiziana Iacobini, Cecilia Brettoni, G. Galli, Massimo A. Mariani, Filippo Vegni, Domenico Maione, Daniela Rinaudo, Rino Rappuoli, John L. Telford, Dennis L. Kasper, Guido Grandi, Claire M. Fraser

    Published 2002
    Get full text
    Artigo
    Save to List
    Saved in:
  19. 19
    Genome analysis of multiple pathogenic isolates of <i>Streptococcus agalactiae</i> : Implications for the microbial “pan-genome”

    Genome analysis of multiple pathogenic isolates of <i>Streptococcus agalactiae</i> : Implications for the microbial “pan-genome” by Hervé Tettelin, Vega Masignani, Michael J. Cieslewicz, Claudio Donati, Duccio Medini, Naomi Ward, Samuel V. Angiuoli, Jonathan Crabtree, Amanda L. Jones, A. Scott Durkin, Robert T. DeBoy, Tanja M. Davidsen, Marirosa Mora, Maria Scarselli, Immaculada Margarit Y Ros, Jeremy Peterson, Christopher R. Hauser, Jaideep P. Sundaram, William Nelson, Ramana Madupu, Lauren Brinkac, Robert J. Dodson, M. J. Rosovitz, Steven A. Sullivan, Sean C. Daugherty, Daniel H. Haft, Jeremy Selengut, Michelle Gwinn, Li‐Wei Zhou, Nikhat Zafar, Hoda Khouri, Diana Radune, George Dimitrov, Kisha Watkins, Kevin J. B. O'Connor, Shannon D. Smith, Teresa R. Utterback, Owen White, Craig E. Rubens, Guido Grandi, Lawrence C. Madoff, Dennis L. Kasper, John L. Telford, Michael R. Wessels, Rino Rappuoli, Claire M. Fraser

    Published 2005
    Get full text
    Artigo
    Save to List
    Saved in:
  20. 20
    The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

    The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria by Timothy D. Read, Scott N. Peterson, Nicolas J. Tourasse, Les Baillie, Ian T. Paulsen, William Nelson, Hervé Tettelin, Derrick E. Fouts, Jonathan A. Eisen, Steven R. Gill, Erik Holtzapple, Ole Andreas Økstad, Erlendur Helgason, Jennifer Rilstone, Martin Wu, James F. Kolonay, Maureen J. Beanan, Robert J. Dodson, Lauren Brinkac, Michelle Gwinn, Robert T. DeBoy, Ramana Madpu, Sean C. Daugherty, A. Scott Durkin, Daniel H. Haft, William Nelson, Jeremy Peterson, Mihai Pop, Hoda Khouri, Diana Radune, Jonathan L. Benton, Yasmin Mahamoud, Lingxia Jiang, Ioana R. Hance, Janice F. Weidman, Kristi Berry, Roger D. Plaut, Alex M. Wolf, Kisha Watkins, William C. Nierman, Alyson Hazen, Robin T. Cline, Caroline Redmond, Joanne E. Thwaite, Owen White, Steven L. Salzberg, Brendan Thomason, Arthur M. Friedlander, Theresa M. Koehler, Philip C. Hanna, Anne-Brit Kolstø, Claire M. Fraser

    Published 2003
    Get full text Get full text
    Artigo
    Save to List
    Saved in:

Search Tools: