Search Results - Scharpf, Robert B.

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  1. 1
    R classes and methods for SNP array data

    R classes and methods for SNP array data by Scharpf, Robert B., Ruczinski, Ingo

    Published 2010
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  2. 2
    Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays

    Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays by Scharpf, Robert B., Parmigiani, Giovanni, Pevsner, Jonathan, Ruczinski, Ingo

    Published 2008
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  3. 3
    Likelihood Estimation of Conjugacy Relationships in Linear Models with Applications to High-Throughput Genomics

    Likelihood Estimation of Conjugacy Relationships in Linear Models with Applications to High-Throughput Genomics by Caffo, Brian S, Liu, Dongmei, Scharpf, Robert B., Parmigiani, Giovanni

    Published 2009
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  4. 4
    A Bayesian model for cross-study differential gene expression

    A Bayesian model for cross-study differential gene expression by Scharpf, Robert B., Tjelmeland, Håkon, Parmigiani, Giovanni, Nobel, Andrew B.

    Published 2009
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  5. 5
    Rejoinder

    Rejoinder by Scharpf, Robert B., Tjelmeland, Håkon, Parmigiani, Giovanni, Nobel, Andrew B.

    Published 2009
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  6. 6
    Detection of rare disease variants in extended pedigrees using RVS

    Detection of rare disease variants in extended pedigrees using RVS by Sherman, Thomas, Fu, Jack, Scharpf, Robert B, Bureau, Alexandre, Ruczinski, Ingo

    Published 2019
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  7. 7
    Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors

    Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors by Zheng, Lily, Niknafs, Noushin, Wood, Laura D, Karchin, Rachel, Scharpf, Robert B

    Published 2022
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  8. 8
    Using the R Package crlmm for Genotyping and Copy Number Estimation

    Using the R Package crlmm for Genotyping and Copy Number Estimation by Scharpf, Robert B., Irizarry, Rafael A., Ritchie, Matthew E., Carvalho, Benilton, Ruczinski, Ingo

    Published 2011
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  9. 9
    A multilevel model to address batch effects in copy number estimation using SNP arrays

    A multilevel model to address batch effects in copy number estimation using SNP arrays by Scharpf, Robert B., Ruczinski, Ingo, Carvalho, Benilton, Doan, Betty, Chakravarti, Aravinda, Irizarry, Rafael A.

    Published 2011
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  10. 10
    Reply to: Limitations of molecular testing in combination with computerized tomographic for lung cancer screening

    Reply to: Limitations of molecular testing in combination with computerized tomographic for lung cancer screening by Mathios, Dimitrios, Bach, Peter B., Phallen, Jillian A., Scharpf, Robert B., Velculescu, Victor E.

    Published 2022
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  11. 11
    Characterization of the Genomic Architecture and Mutational Spectrum of a Small Cell Prostate Carcinoma

    Characterization of the Genomic Architecture and Mutational Spectrum of a Small Cell Prostate Carcinoma by Scott, Alan F., Mohr, David W., Ling, Hua, Scharpf, Robert B., Zhang, Peng, Liptak, Gregory S.

    Published 2014
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  12. 12
    Fast detection of de novo copy number variants from SNP arrays for case-parent trios

    Fast detection of de novo copy number variants from SNP arrays for case-parent trios by Scharpf, Robert B, Beaty, Terri H, Schwender, Holger, Younkin, Samuel G, Scott, Alan F, Ruczinski, Ingo

    Published 2012
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  13. 13
    Pre-processing Agilent microarray data

    Pre-processing Agilent microarray data by Zahurak, Marianna, Parmigiani, Giovanni, Yu, Wayne, Scharpf, Robert B, Berman, David, Schaeffer, Edward, Shabbeer, Shabana, Cope, Leslie

    Published 2007
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  14. 14
    GATA3 frameshift mutation promotes tumor growth in human luminal breast cancer cells and induces transcriptional changes seen in primary GATA3 mutant breast cancers

    GATA3 frameshift mutation promotes tumor growth in human luminal breast cancer cells and induces transcriptional changes seen in primary GATA3 mutant breast cancers by Gustin, John P., Miller, Jernelle, Farag, Mina, Rosen, D. Marc, Thomas, Matthew, Scharpf, Robert B., Lauring, Josh

    Published 2017
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  15. 15
    Cross-platform Comparison of Two Pancreatic Cancer Phenotypes

    Cross-platform Comparison of Two Pancreatic Cancer Phenotypes by Scharpf, Robert B., Iacobuzio-Donahue, Christine A., Cope, Leslie, Ruczinski, Ingo, Garrett-Mayer, Elizabeth, Lakkur, Sindhu, Campagna, Domenico, Parmigiani, Giovanni

    Published 2010
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  16. 16
    Tackling the widespread and critical impact of batch effects in high-throughput data

    Tackling the widespread and critical impact of batch effects in high-throughput data by Leek, Jeffrey T., Scharpf, Robert B., Bravo, Héctor Corrada, Simcha, David, Langmead, Benjamin, Johnson, W. Evan, Geman, Donald, Baggerly, Keith, Irizarry, Rafael A.

    Published 2010
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  17. 17
    A genome-wide study of de novo deletions identifies a candidate locus for non-syndromic isolated cleft lip/palate risk

    A genome-wide study of de novo deletions identifies a candidate locus for non-syndromic isolated cleft lip/palate risk by Younkin, Samuel G, Scharpf, Robert B, Schwender, Holger, Parker, Margaret M, Scott, Alan F, Marazita, Mary L, Beaty, Terri H, Ruczinski, Ingo

    Published 2014
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  18. 18
    Dectecting disease variants in case-parent trio studies using the Bioconductor software package trio

    Dectecting disease variants in case-parent trio studies using the Bioconductor software package trio by Schwender, Holger, Li, Qing, Neumann, Christoph, Taub, Margaret A., Younkin, Samuel G., Berger, Philipp, Scharpf, Robert B., Beaty, Terri H., Ruczinski, Ingo

    Published 2014
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  19. 19
    A genome-wide study of inherited deletions identified two regions associated with non-syndromic isolated oral clefts

    A genome-wide study of inherited deletions identified two regions associated with non-syndromic isolated oral clefts by Younkin, Samuel G, Scharpf, Robert B, Schwender, Holger, Parker, Margaret M, Scott, Alan F, Marazita, Mary L, Beaty, Terri H, Ruczinski, Ingo

    Published 2015
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  20. 20
    Detection of de novo copy number deletions from targeted sequencing of trios

    Detection of de novo copy number deletions from targeted sequencing of trios by Fu, Jack M, Leslie, Elizabeth J, Scott, Alan F, Murray, Jeffrey C, Marazita, Mary L, Beaty, Terri H, Scharpf, Robert B, Ruczinski, Ingo

    Published 2019
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