Rezultati - Sarah Djebali

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  1. 1
    Gene-specific patterns of expression variation across organs and species

    Gene-specific patterns of expression variation across organs and species od Alessandra Breschi, Sarah Djebali, Jesse Gillis, Dmitri D. Pervouchine, Alexander Dobin, Carrie Davis, T Gingeras, Roderic Guigó

    Izdano 2016
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  2. 2
    Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

    Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs od Hagen Tilgner, David G. Knowles, Rory Johnson, Carrie Davis, Sudipto K. Chakrabortty, Sarah Djebali, João Curado, M Snyder, T Gingeras, Roderic Guigó

    Izdano 2012
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  3. 3
    Modeling gene expression using chromatin features in various cellular contexts

    Modeling gene expression using chromatin features in various cellular contexts od Xianjun Dong, Melissa C. Greven, Anshul Kundaje, Sarah Djebali, James Brown, Chao Cheng, T Gingeras, Mark Gerstein, Roderic Guigó, Ewan Birney, Zhiping Weng

    Izdano 2012
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  4. 4
    Long noncoding RNA repertoire in chicken liver and adipose tissue

    Long noncoding RNA repertoire in chicken liver and adipose tissue od Kévin Muret, Christophe Klopp, Valentin Wucher, Diane Esquerré, Fabrice Legeai, Frédéric Lecerf, Colette Désert, Morgane Boutin, Frédéric Jehl, Hervé Acloque, Elisabetta Giuffra, Sarah Djebali, Sylvain Foissac, Thomas Derrien, Sandrine Lagarrigue

    Izdano 2017
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  5. 5
    A benchmark for RNA-seq quantification pipelines

    A benchmark for RNA-seq quantification pipelines od Mingxiang Teng, Michael I. Love, Carrie Davis, Sarah Djebali, Alexander Dobin, Brenton R. Graveley, Sheng Li, Christopher E. Mason, Sara Olson, Dmitri D. Pervouchine, Cricket A. Sloan, Xintao Wei, Lijun Zhan, Rafael A. Irizarry

    Izdano 2016
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  6. 6
    Understanding transcriptional regulation by integrative analysis of transcription factor binding data

    Understanding transcriptional regulation by integrative analysis of transcription factor binding data od Chao Cheng, Roger P. Alexander, Renqiang Min, Jing Leng, Kevin Y. Yip, Joel Rozowsky, Koon‐Kiu Yan, Xianjun Dong, Sarah Djebali, Yijun Ruan, Carrie Davis, Piero Carninci, Timo Lassman, T Gingeras, Roderic Guigó, Ewan Birney, Zhiping Weng, M Snyder, Mark Gerstein

    Izdano 2012
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  7. 7
    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression od Dmitri D. Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie Davis, Pablo Prieto, Alexander Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei Hoon See, Meagan Fastuca, Jörg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, M Beer, Cédric Notredame, Roderic Guigó, T Gingeras

    Izdano 2015
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  8. 8
    RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species

    RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Sp... od Frédéric Jehl, Fabien Degalez, Maria Bernard, Frédéric Lecerf, Laëtitia Lagoutte, Colette Désert, Manon Coulée, Olivier Bouchez, Sophie Leroux, Behnam Abasht, Michèle Tixier‐Boichard, Bertrand Bed’Hom, Thierry Burlot, David Gourichon, Philippe Bardou, Hervé Acloque, Sylvain Foissac, Sarah Djebali, Elisabetta Giuffra, Tatiana Zerjal, Frédérique Pitel, Christophe Klopp, Sandrine Lagarrigue

    Izdano 2021
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  9. 9
    The human transcriptome across tissues and individuals

    The human transcriptome across tissues and individuals od Marta Melé, Pedro G. Ferreira, Ferrán Reverter, David S. DeLuca, Jean Monlong, Michael Sammeth, Taylor Young, Jakob M. Goldmann, Dmitri D. Pervouchine, Timothy J. Sullivan, Rory Johnson, Ayellet V. Segrè, Sarah Djebali, Anastasia Niarchou, The GTEx Consortium, Fred A. Wright, Tuuli Lappalainen, Miquel Calvo, Gad Getz, Emmanouil T. Dermitzakis, Kristin Ardlie, Roderic Guigó

    Izdano 2015
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  10. 10
    The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

    The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression od Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Grégory Guernec, David Martı́n, Angelika Merkel, David G. Knowles, Julien Lagarde, Lavanya Veeravalli, Xiaoan Ruan, Yijun Ruan, Timo Lassmann, Piero Carninci, James Brown, Leonard Lipovich, José M. González, Mark Thomas, Carrie Davis, Ramin Shiekhattar, T Gingeras, Tim Hubbard, Cédric Notredame, Jennifer Harrow, Roderic Guigó

    Izdano 2012
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  11. 11
    Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

    Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells od Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M. Mudge, Cédric Howald, Sylvain Foissac, Catherine Ucla, Jacqueline Chrast, Paolo Ribeca, David Martı́n, Ryan R. Murray, Xinping Yang, Lila Ghamsari, Chenwei Lin, Ian Bell, Erica Dumais, Jörg Drenkow, Michael L. Tress, Josep Lluis Gelpí, Modesto Orozco, Alfonso Valencia, Nynke L. van Berkum, Bryan R. Lajoie, Marc Vidal, J Stamatoyannopoulos, Philippe Batut, Alexander Dobin, Jennifer Harrow, Tim Hubbard, Job Dekker, Adam Frankish, Kourosh Salehi‐Ashtiani, Alexandre Reymond, Stylianos E. Antonarakis, Roderic Guigó, T Gingeras

    Izdano 2012
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  12. 12
    Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

    Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia od Pedro G. Ferreira, Pedro Jares, Daniel Rico, Gonzalo Goméz-López, Alejandra Martínez‐Trillos, Neus Villamor, Simone Ecker, Abel González-Pérez, David G. Knowles, Jean Monlong, Rory Johnson, Vı́ctor Quesada, Sarah Djebali, Panagiotis Papasaikas, Mònica López‐Guerra, Dolors Colomer, Cristina Royo, Maite Cazorla, Magda Pinyol, Guillem Clot, Marta Aymerich, Marı́a Rozman, Marta Kulis, David Tamborero, Anaïs Gouin, Julie Blanc, Marta Gut, Marta Gut, Xosé S. Puente, David G. Pisano, José I. Martín‐Subero, Núria López-Bigas, Armando López‐Guillermo, Alfonso Valencia, Carlos López-Otı́n, Elı́as Campo, Roderic Guigó

    Izdano 2013
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  13. 13
    Multi-species annotation of transcriptome and chromatin structure in domesticated animals

    Multi-species annotation of transcriptome and chromatin structure in domesticated animals od Sylvain Foissac, Sarah Djebali, Kylie Munyard, Nathalie Villa‐Vialaneix, Andréa Rau, Kévin Muret, Diane Esquerré, Matthias Zytnicki, Thomas Derrien, Philippe Bardou, Fany Blanc, Cédric Cabau, Elisa Crisci, Sophie Dhorne‐Pollet, Françoise Drouet, Thomas Faraut, Ignacio González, Adeline Goubil, Sonia Lacroix‐Lamandé, Fabrice Laurent, Sylvain Marthey, María Marti-Marimon, Raphaelle Momal-Leisenring, Florence Mompart, Pascale Quéré, David Robelin, Magali San Cristobal, Gwenola Tosser‐Klopp, Silvia Vincent-Naulleau, Stéphane Fabre, Marie-Hélène Pinard-van Der Laan, Christophe Klopp, Michèle Tixier-Boichard, Hervé Acloque, Sandrine Lagarrigue, Elisabetta Giuffra

    Izdano 2019
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  14. 14
    An atlas of human long non-coding RNAs with accurate 5′ ends

    An atlas of human long non-coding RNAs with accurate 5′ ends od Chung-Chau Hon, Jordan A. Ramilowski, Jayson Harshbarger, Nicolas Bertin, Owen J. L. Rackham, Julian Gough, Elena Denisenko, Sebastian Schmeier, Thomas M. Poulsen, Jessica Severin, Marina Lizio, Hideya Kawaji, Takeya Kasukawa, Masayoshi Itoh, A. Maxwell Burroughs, Shohei Noma, Sarah Djebali, Tanvir Alam, Yulia A. Medvedeva, Alison C. Testa, Leonard Lipovich, Chi-Wai Yip, Imad Abugessaisa, Mickaël Mendez, Akira Hasegawa, Dave Tang, Timo Lassmann, Peter Heutink, Magda Babina, Christine A. Wells, Soichi Kojima, Yukio Nakamura, Harukazu Suzuki, Carsten O. Daub, Michiel de Hoon, Peter Arner, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest

    Izdano 2017
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  15. 15
    Assessment of transcript reconstruction methods for RNA-seq

    Assessment of transcript reconstruction methods for RNA-seq od Tamara Steijger, Josep F. Abril, Pär G. Engström, Felix Kokocinski, Martin Akerman, Tyler Alioto, Giovanna Ambrosini, Stylianos E. Antonarakis, Jonas Behr, Paul Bertone, Regina Bohnert, Philipp Bücher, Nicole Cloonan, Thomas Derrien, Sarah Djebali, Jiang Du, Sandrine Dudoit, Mark Gerstein, T Gingeras, David González, Sean M. Grimmond, Roderic Guigó, Lukas Habegger, Jennifer Harrow, Tim Hubbard, Christian Iseli, Géraldine Jean, André Kahles, Julien Lagarde, Jing Leng, Grégory Lefebvre, Suzanna Lewis, A Mortazavi, Peter Niermann, Gunnar Rätsch, Alexandre Reymond, Paolo Ribeca, Hugues Richard, Jacques Rougemont, Joel Rozowsky, Michael Sammeth, Andrea Sboner, Marcel H. Schulz, Steven M J Searle, Naryttza Diaz Solorzano, Victor Solovyev, Mario Stanke, Brian J. Stevenson, Heinz Stockinger, Armand Valsesia, David Weese, Simon White, B Wold, Jie Wu, Thomas D. Wu, Georg Zeller, Daniel R. Zerbino, Michael Q. Zhang

    Izdano 2013
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  16. 16
    Landscape of transcription in human cells

    Landscape of transcription in human cells od Sarah Djebali, Carrie Davis, Angelika Merkel, Alexander Dobin, Timo Lassmann, A Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger, Chenghai Xue, Georgi K. Marinov, Jainab Khatun, Brian A. Williams, Chris Zaleski, Joel Rozowsky, Maik Röder, Felix Kokocinski, Rehab Abdelhamid, Tyler Alioto, Igor Antoshechkin, Michael T. Baer, Nadav Bar, Philippe Batut, Kimberly Bell, Ian Bell, Sudipto K. Chakrabortty, Xian Chen, Jacqueline Chrast, João Curado, Thomas Derrien, Jörg Drenkow, Erica Dumais, Jacqueline Dumais, Radha Duttagupta, Emilie Falconnet, Meagan Fastuca, Kata Fejes-Toth, Pedro G. Ferreira, Sylvain Foissac, Melissa J. Fullwood, Hui Gao, David González, Assaf Gordon, Harsha P. Gunawardena, Cédric Howald, Sonali Jha, Rory Johnson, Philipp Kapranov, Brandon King, Colin Kingswood, Oscar Junhong Luo, Eddie Park, Kimberly Persaud, Jonathan Preall, Paolo Ribeca, Brian A. Risk, Daniel Robyr, Michael Sammeth, Lorian Schaffer, Lei-Hoon See, Atif Shahab, Jørgen Skancke, Ana Maria Suzuki, Hazuki Takahashi, Hagen Tilgner, Diane Trout, Nathalie Walters, Huaien Wang, John A. Wrobel, Yanbao Yu, Xiaoan Ruan, Yoshihide Hayashizaki, Jennifer Harrow, Mark Gerstein, Tim Hubbard, Alexandre Reymond, Stylianos E. Antonarakis, Gregory J. Hannon, Morgan C. Giddings, Yijun Ruan, B Wold, Piero Carninci, Roderic Guigó, T Gingeras

    Izdano 2012
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  17. 17
    An encyclopedia of mouse DNA elements (Mouse ENCODE)

    An encyclopedia of mouse DNA elements (Mouse ENCODE) od J Stamatoyannopoulos, M Snyder, Ross C. Hardison, Bing Ren, T Gingeras, David M. Gilbert, Mark Groudine, M. A. Bender, Rajinder Kaul, Theresa Canfield, Erica Giste, Audra Johnson, Zhang Mia, Gayathri Balasundaram, Rachel Byron, Vaughan Roach, Peter J. Sabo, Richard Sandstrom, A Sandra Stehling, Robert E. Thurman, Sherman M. Weissman, Philip Cayting, Manoj Hariharan, Lian Jin, Yong Cheng, Stephen G. Landt, Zhihai Ma, B Wold, Job Dekker, Gregory E. Crawford, Cheryl A. Keller, Wei-Sheng Wu, Christopher A. Morrissey, Swathi A. Kumar, Tejaswini Mishra, Deepti Jain, Marta Byrska-Bishop, Daniel Blankenberg, Bryan R. Lajoie, Gaurav Jain, Amartya Sanyal, Kaun-Bei Chen, Olgert Denas, James Taylor, Gerd A. Blobel, Mitchell J. Weiss, Max Pimkin, Wulan Deng, Georgi K. Marinov, Brian A. Williams, Katherine Fisher-Aylor, Gilberto DeSalvo, Anthony Kiralusha, Diane Trout, Henry Amrhein, A Mortazavi, Lee Edsall, David McCleary, Samantha Kuan, Yin Shen, Feng Yue, Zhen Ye, Carrie Davis, Chris Zaleski, Sonali Jha, Chenghai Xue, Alexander Dobin, Wei Lin, Meagan Fastuca, Huaien Wang, Roderic Guigó, Sarah Djebali, Julien Lagarde, Tyrone Ryba, Takayo Sasaki, Venkat S. Malladi, Melissa Cline, Vanessa M. Kirkup, Katrina Learned, Kate R. Rosenbloom, W. James Kent, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Rebecca F. Lowdon, Leslie B. Adams

    Izdano 2012
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  18. 18
    A comparative encyclopedia of DNA elements in the mouse genome

    A comparative encyclopedia of DNA elements in the mouse genome od Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Wei-Sheng Wu, Tyrone Ryba, Richard Sandstrom, Zhihai Ma, Carrie Davis, Benjamin D. Pope, Yin Shen, Dmitri D. Pervouchine, Sarah Djebali, Robert E. Thurman, Rajinder Kaul, Eric Rynes, Anthony Kirilusha, Georgi K. Marinov, Brian A. Williams, Diane Trout, Henry Amrhein, Katherine Fisher-Aylor, Igor Antoshechkin, Gilberto DeSalvo, Lei-Hoon See, Meagan Fastuca, Jörg Drenkow, Chris Zaleski, Alexander Dobin, Pablo Prieto, Julien Lagarde, Giovanni Bussotti, Andrea Tanzer, Olgert Denas, Kanwei Li, M. A. Bender, Miaohua Zhang, Rachel Byron, Mark Groudine, David McCleary, Long Pham, Zhen Ye, Samantha Kuan, Lee Edsall, Yi-Chieh Wu, Matthew D. Rasmussen, Mukul S. Bansal, Manolis Kellis, Cheryl A. Keller, Christapher S. Morrissey, Tejaswini Mishra, Deepti Jain, Nergiz Doğan, Robert S. Harris, Philip Cayting, Trupti Kawli, Alan P. Boyle, Ghia Euskirchen, Anshul Kundaje, Shin Lin, Yiing Lin, Camden Jansen, Venkat S. Malladi, Melissa Cline, Drew T. Erickson, Vanessa M. Kirkup, Katrina Learned, Cricket A. Sloan, Kate R. Rosenbloom, Beatriz Lacerda de Sousa, Kathryn Beal, Miguel Pignatelli, Paul Flicek, Lian Jin, Tamer Kahveci, Dongwon Lee, W. James Kent, Miguel Ramalho Santos, Javier Herrero, Cédric Notredame, Audra Johnson, Shinny Vong, Kristen Lee, Daniel Bates, Fidencio Neri, Morgan Diegel, Theresa K. Canfield, Peter J. Sabo, Matthew S. Wilken, Thomas A. Reh, Erika Giste, Anthony Shafer, Tanya Kutyavin, Eric Haugen, Douglas Dunn, Alex Reynolds, Shane Neph, Richard Humbert, R. Scott Hansen, Marella de Bruijn

    Izdano 2014
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  19. 19
    Comparative analysis of the transcriptome across distant species

    Comparative analysis of the transcriptome across distant species od Mark Gerstein, Joel Rozowsky, Koon‐Kiu Yan, Daifeng Wang, Chao Cheng, James B. Brown, Carrie Davis, LaDeana Hillier, Cristina Sisu, Jingyi Jessica Li, Baikang Pei, Arif Harmanci, Michael O. Duff, Sarah Djebali, Roger P. Alexander, B. Alver, Raymond K. Auerbach, Kimberly Bell, Peter J. Bickel, Max E. Boeck, Nathan P. Boley, Benjamin W. Booth, Lucy Cherbas, Peter Cherbas, Chao Di, Alexander Dobin, Jörg Drenkow, Brent Ewing, Gang Fang, Megan Fastuca, Elise A. Feingold, Adam Frankish, Guanjun Gao, Peter J. Good, Roderic Guigó, Ann S. Hammonds, Jennifer Harrow, Roger A. Hoskins, Cédric Howald, Long Hu, Haiyan Huang, Tim Hubbard, Chau Huynh, Sonali Jha, Dionna M. Kasper, Masaomi Kato, Thomas C. Kaufman, Robert R. Kitchen, Erik Ladewig, Julien Lagarde, Eric C. Lai, Jing Leng, Zhi John Lu, Michael J. MacCoss, Gemma E. May, Rebecca McWhirter, Gennifer E. Merrihew, David M. Miller, A Mortazavi, Rabi Murad, Brian Oliver, Sara Olson, Peter J. Park, Michael J. Pazin, Norbert Perrimon, Dmitri D. Pervouchine, V Reinke, Alexandre Reymond, Garrett Robinson, Anastasia Samsonova, Gary Saunders, Felix Schlesinger, Anurag Sethi, Frank J. Slack, William C. Spencer, Marcus H. Stoiber, Pnina Strasbourger, Andrea Tanzer, Owen Thompson, Kenneth H. Wan, Guilin Wang, Huaien Wang, Kathie L. Watkins, Jiayu Wen, Kejia Wen, Chenghai Xue, Li Yang, Kevin Y. Yip, Chris Zaleski, Yan Zhang, Henry Zheng, Steven E. Brenner, Brenton R. Graveley, S Celniker, T Gingeras, R Waterston

    Izdano 2014
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  20. 20
    Perspectives on ENCODE

    Perspectives on ENCODE od Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen Aken, Rizi Ai, Jennifer A. Akiyama, Omar Al Jammal, Henry Amrhein, Stacie M. Anderson, Gregory R. Andrews, Igor Antoshechkin, Kristin Ardlie, Joel Armstrong, Matthew Astley, Budhaditya Banerjee, Amira Barkal, If H. A. Barnes, Iros Barozzi, Daniel Barrell, Gemma Barson, Daniel J. Bates, Ulugbek K. Baymuradov, Cassandra Bazile, M Beer, Samantha Beik, M. A. Bender, Ruth Bennett, Louis Philip Benoit Bouvrette, B Bernstein, Andrew Berry, Anand Bhaskar, Alexandra Bignell, Steven M. Blue, David M. Bodine, Carles Boix, Nathan Boley, Tyler Borrman, Beatrice Borsari, Alan P. Boyle, Laurel A. Brandsmeier, Alessandra Breschi, Emery H. Bresnick, Jason A. Brooks, Michael Buckley, Christopher B. Burge, Rachel Byron, Eileen Cahill, Lingling Cai, Lulu Cao, Mark Carty, Rosa Castanon, Andrés Castillo, Hassan Chaı̈b, Esther T. Chan, Daniel R. Chee, Sora Chee, Hao Chen, Huaming Chen, Jiayu Chen, Songjie Chen, J. Michael Cherry, Surya B. Chhetri, Jyoti S. Choudhary, Jacqueline Chrast, Dongjun Chung, Declan Clarke, Neal Cody, Candice J. Coppola, Julie Coursen, Anthony D’Ippolito, Stephen Dalton, Cassidy Danyko, Claire Davidson, José Dávila-Velderrain, Carrie Davis, Job Dekker, Alden Deran, Gilberto DeSalvo, Gloria Despacio-Reyes, Colin N. Dewey, Diane E. Dickel, Morgan Diegel, Mark Diekhans, Vishnu Dileep, Bo Ding, Sarah Djebali, Alexander Dobin, Daniel Domı́nguez, Sarah Donaldson, Jörg Drenkow, Timothy R. Dreszer, Yotam Drier, Michael O. Duff, Douglass Dunn, Catharine Eastman, Joseph R. Ecker, Matthew D. Edwards, Nicole El-Ali

    Izdano 2020
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