Søgeresultater - Samuel V. Angiuoli

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  1. 1
    Mugsy: fast multiple alignment of closely related whole genomes

    Mugsy: fast multiple alignment of closely related whole genomes af Samuel V. Angiuoli, Steven L. Salzberg

    Udgivet 2010
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  2. 2
    Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing

    Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing af Samuel V. Angiuoli, James R. White, Malcolm Matalka, Owen White, W. Florian Fricke

    Udgivet 2011
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  3. 3
    CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota

    CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota af James R. White, Cynthia Maddox, Owen White, Samuel V. Angiuoli, W. Florian Fricke

    Udgivet 2013
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  4. 4
    Using Sybil for interactive comparative genomics of microbes on the web

    Using Sybil for interactive comparative genomics of microbes on the web af David R. Riley, Samuel V. Angiuoli, Jonathan Crabtree, Julie C. Dunning Hotopp, Hervé Tettelin

    Udgivet 2011
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  5. 5
    The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists

    The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists af Sven Heinicke, Michael Livstone, Charles Lu, Rose Oughtred, Fan Kang, Samuel V. Angiuoli, Owen White, David Botstein, Kara Dolinski

    Udgivet 2007
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  6. 6
    A Comparative Genomic Analysis of Diverse Clonal Types of Enterotoxigenic<i>Escherichia coli</i>Reveals Pathovar-Specific Conservation

    A Comparative Genomic Analysis of Diverse Clonal Types of Enterotoxigenic<i>Escherichia coli</i>Reveals Pathovar-Specific Conservation af Jason W. Sahl, Hans Steinsland, Julia C. Redman, Samuel V. Angiuoli, James P. Nataro, Halvor Sommerfelt, David A. Rasko

    Udgivet 2010
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  7. 7
    The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

    The IGS Standard Operating Procedure for Automated Prokaryotic Annotation af Kevin Galens, Joshua Orvis, Sean C. Daugherty, Heather H. Creasy, Samuel V. Angiuoli, Owen White, Jennifer R. Wortman, Anup Mahurkar, Michelle Giglio

    Udgivet 2011
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  8. 8
    Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation

    Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation af Samuel V. Angiuoli, Aaron Gussman, William Klimke, Guy Cochrane, Dawn Field, George M Garrity, Chinnappa D. Kodira, Nikos C. Kyrpides, Ramana Madupu, Victor Markowitz, Tatiana Tatusova, Nick Thomson, Owen White

    Udgivet 2008
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  9. 9
    Notch1 Mutations Are Drivers of Oral Tumorigenesis

    Notch1 Mutations Are Drivers of Oral Tumorigenesis af Evgeny Izumchenko, Kai Sun, Siân Jones, Mariana Brait, Nishant Agrawal, Wayne M. Koch, Christine L. McCord, David R. Riley, Samuel V. Angiuoli, Victor E. Velculescu, Wei-Wen Jiang, David Sidransky

    Udgivet 2014
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  10. 10
    Ergatis: a web interface and scalable software system for bioinformatics workflows

    Ergatis: a web interface and scalable software system for bioinformatics workflows af Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett R. Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli

    Udgivet 2010
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  11. 11
    Genomic analyses of gynaecologic carcinosarcomas reveal frequent mutations in chromatin remodelling genes

    Genomic analyses of gynaecologic carcinosarcomas reveal frequent mutations in chromatin remodelling genes af Siân Jones, Nicolas Stransky, Christine L. McCord, Ethan Cerami, James Lagowski, Devon D. Kelly, Samuel V. Angiuoli, Mark Sausen, Lisa Kann, Manish Shukla, Rosemary Makar, Laura D. Wood, Luis A. Díaz, Christoph Lengauer, Victor E. Velculescu

    Udgivet 2014
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  12. 12
    <i>Neisseria meningitidis</i> is structured in clades associated with restriction modification systems that modulate homologous recombination

    <i>Neisseria meningitidis</i> is structured in clades associated with restriction modification systems that modulate homologous recombination af Sonia Budroni, Emilio Siena, Julie C. Dunning Hotopp, Kate L. Seib, Davide Serruto, Chiara Nofroni, Maurizio Comanducci, David R. Riley, Sean C. Daugherty, Samuel V. Angiuoli, Antonello Covacci, Mariagrazia Pizza, Rino Rappuoli, E. Richard Moxon, Hervé Tettelin, Duccio Medini

    Udgivet 2011
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  13. 13
    Personalized genomic analyses for cancer mutation discovery and interpretation

    Personalized genomic analyses for cancer mutation discovery and interpretation af Siân Jones, Valsamo Anagnostou, Karli Lytle, Sonya Parpart-Li, Monica Nesselbush, David R. Riley, Manish Shukla, Bryan Chesnick, Maura Kadan, Eniko Papp, Kevin Galens, Derek Murphy, Theresa Zhang, Lisa Kann, Mark Sausen, Samuel V. Angiuoli, Luis A. Díaz, Victor E. Velculescu

    Udgivet 2015
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  14. 14
    Integrated Next-Generation Sequencing and Avatar Mouse Models for Personalized Cancer Treatment

    Integrated Next-Generation Sequencing and Avatar Mouse Models for Personalized Cancer Treatment af Elena Garralda, Keren Paz, Pedro P. López‐Casas, Siân Jones, Amanda Katz, Lisa Kann, Fernando López‐Ríos, Francesca Sarno, Fátima Al‐Shahrour, David Vásquez, Elizabeth Bruckheimer, Samuel V. Angiuoli, Antonio Calles, Luis A. Díaz, Victor E. Velculescu, Alfonso Valencia, David Sidransky, Manuel Hidalgo

    Udgivet 2014
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  15. 15
    Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

    Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species af Claudio Donati, N. Luisa Hiller, Hervé Tettelin, Alessandro Muzzi, Nicholas J. Croucher, Samuel V. Angiuoli, Marco R. Oggioni, Julie C. Dunning Hotopp, Fen Hu, David R. Riley, Antonello Covacci, Timothy J. Mitchell, Stephen D. Bentley, Mogens Kilian, Garth D. Ehrlich, Rino Rappuoli, E. Richard Moxon, Vega Masignani

    Udgivet 2010
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  16. 16
    A machine learning approach for somatic mutation discovery

    A machine learning approach for somatic mutation discovery af Derrick E. Wood, James R. White, Andrew Georgiadis, Beth Van Emburgh, Sonya Parpart-Li, Jason Mitchell, Valsamo Anagnostou, Noushin Niknafs, Rachel Karchin, Eniko Papp, Christine L. McCord, Peter R. LoVerso, David R. Riley, Luis A. Díaz, Siân Jones, Mark Sausen, Victor E. Velculescu, Samuel V. Angiuoli

    Udgivet 2018
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  17. 17
    Noninvasive Detection of Microsatellite Instability and High Tumor Mutation Burden in Cancer Patients Treated with PD-1 Blockade

    Noninvasive Detection of Microsatellite Instability and High Tumor Mutation Burden in Cancer Patients Treated with PD-1 Blockade af Andrew Georgiadis, Jennifer N. Durham, Laurel A. Keefer, Bjarne R. Bartlett, Magdalena Zielonka, Derek Murphy, James R. White, Steve Lu, Ellen L. Verner, Finey Ruan, David R. Riley, Robert A. Anders, Erika Gedvilaite, Samuel V. Angiuoli, Siân Jones, Victor E. Velculescu, Dung T. Le, Luis A. Díaz, Mark Sausen

    Udgivet 2019
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  18. 18
    Metastatic Colorectal Cancer Treatment Response Evaluation by Ultra-Deep Sequencing of Cell-Free DNA and Matched White Blood Cells

    Metastatic Colorectal Cancer Treatment Response Evaluation by Ultra-Deep Sequencing of Cell-Free DNA and Matched White Blood Cells af Iris van ’t Erve, Jamie E. Medina, Alessandro Leal, Eniko Papp, Jillian Phallen, Vilmos Adleff, Elaine Jiayuee Chiao, Adith S. Arun, Karen Bolhuis, John K. Simmons, Aanavi Karandikar, Kenneth C. Valkenburg, Mark Sausen, Samuel V. Angiuoli, Robert B. Scharpf, Cornelis J. A. Punt, Gerrit A. Meijer, Victor E. Velculescu, Remond J.A. Fijneman

    Udgivet 2022
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  19. 19
    Global Phylogeny of<i>Mycobacterium tuberculosis</i>Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA Fingerprinting Systems, and Recommendations for a Minimal Standard SNP Set

    Global Phylogeny of<i>Mycobacterium tuberculosis</i>Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA... af Ingrid Filliol, Alifiya S. Motiwala, Magali Cavatore, Weihong Qi, Manzour Hernando Hazbón, Miriam Bobadilla-del-Valle, Janet Fyfe, Lourdes García‐García, Nalin Rastogi, Christophe Sola, Thierry Zozio, Marta Inírida Guerrero, Clara Inés León, Jonathan Crabtree, Samuel V. Angiuoli, Kathleen D. Eisenach, Rıza Durmaz, Moses Joloba, Adrián Rendón, José Sifuentes‐Osornio, Alfredo Ponce‐de‐León, M. Donald Cave, Robert Fleischmann, Thomas S. Whittam, David Alland

    Udgivet 2005
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  20. 20
    Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant <i>Staphylococcus aureus</i> Strain and a Biofilm-Producing Methicillin-Resistant <i>Staphylococcus epidermidis</i> Strain

    Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant <i>Staphylococcus aureus</i> Strain and a Biofilm-Producing Me... af Steven R. Gill, Derrick E. Fouts, Gordon L. Archer, Emmanuel F. Mongodin, Robert T. DeBoy, Jacques Ravel, Ian T. Paulsen, James F. Kolonay, Lauren Brinkac, Mauren Beanan, Robert J. Dodson, Sean C. Daugherty, Ramana Madupu, Samuel V. Angiuoli, A. Scott Durkin, Daniel H. Haft, Jessica Vamathevan, Hoda Khouri, Terry Utterback, Chris Lee, George Dimitrov, Lingxia Jiang, Haiying Qin, Jan Weidman, Kevin Tran, Kathy Kang, Ioana R. Hance, William Nelson, Claire M. Fraser

    Udgivet 2005
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