Resultats de la cerca - Sameer Velankar

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  1. 1
    The impact of AlphaFold Protein Structure Database on the fields of life sciences

    The impact of AlphaFold Protein Structure Database on the fields of life sciences per Mihály Váradi, Sameer Velankar

    Publicat 2022
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  2. 2
    Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition

    Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition per Marc F. Lensink, Sameer Velankar, Shoshana J. Wodak

    Publicat 2016
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  3. 3
    The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors

    The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors per Mihály Váradi, Nicola Bordin, Christine Orengo, Sameer Velankar

    Publicat 2023
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  4. 4
    Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition

    Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition per Marc F. Lensink, Nurul Nadzirin, Sameer Velankar, Shoshana J. Wodak

    Publicat 2019
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  5. 5
    Crystal Structures of Complexes of PcrA DNA Helicase with a DNA Substrate Indicate an Inchworm Mechanism

    Crystal Structures of Complexes of PcrA DNA Helicase with a DNA Substrate Indicate an Inchworm Mechanism per Sameer Velankar, Panos Soultanas, Mark S. Dillingham, Hosahalli S. Subramanya, Dale B. Wigley

    Publicat 1999
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  6. 6
    The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies

    The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies per Vaishali Waman, Neeladri Sen, Mihály Váradi, Antoine Daina, Shoshana J. Wodak, Vincent Zoete, Sameer Velankar, Christine Orengo

    Publicat 2020
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  7. 7
    Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

    Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures per David Sehnal, Sebastian Bittrich, Mandar Deshpande, Radka Svobodová Vařeková, Karel Berka, Václav Bazgier, Sameer Velankar, S.K. Burley, Jaroslav Koča, Alexander Rose

    Publicat 2021
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  8. 8
    Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies

    Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies per Joseph I. J. Ellaway, Stephen Anyango, Sreenath Nair, Hossam A. Zaki, Nurul Nadzirin, Harold R. Powell, Aleksandras Gutmanas, Mihály Váradi, Sameer Velankar

    Publicat 2024
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  9. 9
    UniChem: a unified chemical structure cross-referencing and identifier tracking system

    UniChem: a unified chemical structure cross-referencing and identifier tracking system per Jon Chambers, Mark Davies, Anna Gaulton, Anne Hersey, Sameer Velankar, Robert Petryszak, Janna Hastings, Louisa J. Bellis, Shaun McGlinchey, John P. Overington

    Publicat 2013
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  10. 10
    Clustering predicted structures at the scale of the known protein universe

    Clustering predicted structures at the scale of the known protein universe per Inigo Barrio‐Hernandez, Jingi Yeo, Jürgen Jänes, Milot Mirdita, Cameron L. M. Gilchrist, Tanita Wein, Mihály Váradi, Sameer Velankar, Pedro Beltrão, Martin Steinegger

    Publicat 2023
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  11. 11
    Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features

    Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features per Valentina Speranzini, Dante Rotili, Giuseppe Ciossani, Simona Pilotto, Biagina Marrocco, Mariantonietta Forgione, Alessia Lucidi, Federico Forneris, Parinaz Mehdipour, Sameer Velankar, Antonello Mai, Andrea Mattevi

    Publicat 2016
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  12. 12
    AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms

    AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms per Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine Orengo

    Publicat 2023
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  13. 13
    BioJS: an open source JavaScript framework for biological data visualization

    BioJS: an open source JavaScript framework for biological data visualization per John Gómez, Leyla García, Gustavo A Salazar, José Villaveces, Swanand Gore, Alexander García, María Martin, Guillaume Launay, Rafael Alcántara, Noemí del‐Toro, Marine Dumousseau, Sandra Orchard, Sameer Velankar, Henning Hermjakob, Chenggong Zong, Peipei Ping, Manuel Corpas, Rafael C. Jiménez

    Publicat 2013
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  14. 14
    The complex portal - an encyclopaedia of macromolecular complexes

    The complex portal - an encyclopaedia of macromolecular complexes per Birgit Meldal, Oscar Forner-Martinez, Maria C. Costanzo, Jose M Dana, János Demeter, Marine Dumousseau, Selina S. Dwight, Anna Gaulton, Luana Licata, Anna N. Melidoni, Sylvie Ricard‐Blum, Bernd Roechert, Marek S. Skyzypek, Manu D. Tiwari, Sameer Velankar, Edith D. Wong, Henning Hermjakob, Sandra Orchard

    Publicat 2014
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  15. 15
    EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2022

    EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2022 per Matthew Thakur, Alex Bateman, Cath Brooksbank, Mallory Freeberg, Melissa Harrison, Matthew Hartley, Thomas Keane, Gerard J. Kleywegt, Andrew R. Leach, Maria Levchenko, Sarah Morgan, Ellen M. McDonagh, Sandra Orchard, Irene Papatheodorou, Sameer Velankar, Juan Antonio Vizcaíno, Rick Witham, Barbara Zdrazil, Johanna McEntyre

    Publicat 2022
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  16. 16
    EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023

    EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023 per Matthew Thakur, Annalisa Buniello, Cath Brooksbank, Kim T Gurwitz, Matthew D. Hall, Matthew Hartley, David G. Hulcoop, Andrew R. Leach, Diana Marquês, María Martin, Aziz Mithani, Ellen M. McDonagh, Euphemia Mutasa-Gottgens, David Ochoa, Yasset Pérez‐Riverol, James Stephenson, Mihály Váradi, Sameer Velankar, Juan Antonio Vizcaíno, Rick Witham, Johanna McEntyre

    Publicat 2023
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  17. 17
    EMDataBank.org: unified data resource for CryoEM

    EMDataBank.org: unified data resource for CryoEM per Catherine L. Lawson, Matthew L. Baker, C. Best, Bi Chen, Matthew Dougherty, Pingfa Feng, Glen van Ginkel, Batsal Devkota, Ingvar Lagerstedt, Steven J. Ludtke, Richard Newman, Thomas J. Oldfield, Ian Rees, Gaurav Sahni, Roberto Sala, Sameer Velankar, Jonathan Warren, John D. Westbrook, K. Henrick, Gerard J. Kleywegt, Helen M. Berman, Wah Chiu

    Publicat 2010
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  18. 18
    AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

    AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models per Mihály Váradi, Stephen Anyango, Mandar Deshpande, Sreenath Nair, Cindy Natassia, Galabina Yordanova, David Yu Yuan, Oana Stroe, Gemma Wood, Agata Laydon, Augustin Žídek, Tim Green, Kathryn Tunyasuvunakool, Stig Petersen, John Jumper, Ellen Clancy, Richard Green, Ankur Vora, Mira Lutfi, Michael Figurnov, Andrew Cowie, Nicole Hobbs, Pushmeet Kohli, Gerard J. Kleywegt, Ewan Birney, Demis Hassabis, Sameer Velankar

    Publicat 2021
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  19. 19
    R2DT: a comprehensive platform for visualizing RNA secondary structure

    R2DT: a comprehensive platform for visualizing RNA secondary structure per Holly M. McCann, Caeden D. Meade, Loren Dean Williams, Anton S. Petrov, Philip Z. Johnson, Anne E. Simon, David Hoksza, Eric P. Nawrocki, Patricia P. Chan, Todd M. Lowe, Carlos Eduardo Ribas, Blake Sweeney, Fábio Madeira, Stephen Anyango, Sri Devan Appasamy, Mandar Deshpande, Mihály Váradi, Sameer Velankar, Craig L. Zirbel, Aleksei Naiden, Fabrice Jossinet, Anton I. Petrov

    Publicat 2025
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  20. 20
    NMR Exchange Format: a unified and open standard for representation of NMR restraint data

    NMR Exchange Format: a unified and open standard for representation of NMR restraint data per Aleksandras Gutmanas, Paul D. Adams, Benjamin Bardiaux, Helen M. Berman, David A. Case, Rasmus H. Fogh, Peter Güntert, P. Hendrickx, Torsten Herrmann, Gerard J. Kleywegt, Naohiro Kobayashi, Oliver F. Lange, John L. Markley, G.T. Montelione, Michaël Nilges, Timothy J. Ragan, Charles D. Schwieters, Roberto Tejero, Eldon L. Ulrich, Sameer Velankar, Wim Vranken, Jonathan R. Wedell, John D. Westbrook, David S. Wishart, Geerten W. Vuister

    Publicat 2015
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