Search Results - Sam Kovaka

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  1. 1
    Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing

    Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing by Sam Kovaka, Shujun Ou, Katharine M. Jenike, Michael C. Schatz

    Published 2023
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  2. 2
    Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED

    Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED by Sam Kovaka, Yunfan Fan, Bohan Ni, Winston Timp, Michael C. Schatz

    Published 2020
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  3. 3
    Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED

    Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED by Sam Kovaka, Yunfan Fan, Bohan Ni, Winston Timp, Michael C. Schatz

    Published 2020
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  4. 4
    Transcriptome assembly from long-read RNA-seq alignments with StringTie2

    Transcriptome assembly from long-read RNA-seq alignments with StringTie2 by Sam Kovaka, Aleksey V. Zimin, Geo Pertea, Roham Razaghi, Steven L. Salzberg, Mihaela Pertea

    Published 2019
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  5. 5
    Transcriptome assembly from long-read RNA-seq alignments with StringTie2

    Transcriptome assembly from long-read RNA-seq alignments with StringTie2 by Sam Kovaka, Aleksey V. Zimin, Geo Pertea, Roham Razaghi, Steven L. Salzberg, Mihaela Pertea

    Published 2019
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  6. 6
    Mem-based pangenome indexing for k-mer queries

    Mem-based pangenome indexing for k-mer queries by Stephen Hwang, Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead

    Published 2025
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  7. 7
    Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment

    Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment by Sam Kovaka, Paul W. Hook, Katharine M. Jenike, Vikram S. Shivakumar, Luke B Morina, Roham Razaghi, Winston Timp, Michael C. Schatz

    Published 2024
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  8. 8
    Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment

    Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment by Sam Kovaka, Paul W. Hook, Katharine M. Jenike, Vikram S. Shivakumar, Luke B Morina, Roham Razaghi, Winston Timp, Michael C. Schatz

    Published 2025
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  9. 9
    Novel circular RNA circNF1 acts as a molecular sponge, promoting gastric cancer by absorbing miR-16

    Novel circular RNA circNF1 acts as a molecular sponge, promoting gastric cancer by absorbing miR-16 by Zhe Wang, Ke Ma, Stephanie Pitts, Yulan Cheng, Xi Liu, Xiquan Ke, Sam Kovaka, Hassan Ashktorab, Duane T. Smoot, Michael C. Schatz, Zhirong Wang, Stephen J. Meltzer

    Published 2018
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