Search Results - Sakakibara, Yasubumi

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  1. 1
    Convolutional neural networks for classification of alignments of non-coding RNA sequences

    Convolutional neural networks for classification of alignments of non-coding RNA sequences by Aoki, Genta, Sakakibara, Yasubumi

    Published 2018
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  2. 2
    Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data

    Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data by Jayakumar, Vasanthan, Sakakibara, Yasubumi

    Published 2017
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  3. 3
    Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning

    Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning by Akiyama, Manato, Sakakibara, Yasubumi

    Published 2022
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  4. 4
    An extended genovo metagenomic assembler by incorporating paired-end information

    An extended genovo metagenomic assembler by incorporating paired-end information by , Afiahayati, Sato, Kengo, Sakakibara, Yasubumi

    Published 2013
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  5. 5
    MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning

    MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning by Afiahayati, Sato, Kengo, Sakakibara, Yasubumi

    Published 2015
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  6. 6
    MetaVelvet-DL: a MetaVelvet deep learning extension for de novo metagenome assembly

    MetaVelvet-DL: a MetaVelvet deep learning extension for de novo metagenome assembly by Liang, Kuo-ching, Sakakibara, Yasubumi

    Published 2021
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  7. 7
    Identifying cooperative transcriptional regulations using protein–protein interactions

    Identifying cooperative transcriptional regulations using protein–protein interactions by Nagamine, Nobuyoshi, Kawada, Yuji, Sakakibara, Yasubumi

    Published 2005
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  8. 8
    Chaperone Therapy for Neuronopathic Lysosomal Diseases: Competitive Inhibitors as Chemical Chaperones for Enhancement of Mutant Enzyme Activities

    Chaperone Therapy for Neuronopathic Lysosomal Diseases: Competitive Inhibitors as Chemical Chaperones for Enhancement of Mutant Enzyme Activities by Suzuki, Yoshiyuki, Ogawa, Seiichiro, Sakakibara, Yasubumi

    Published 2009
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  9. 9
    Robust and accurate prediction of noncoding RNAs from aligned sequences

    Robust and accurate prediction of noncoding RNAs from aligned sequences by Saito, Yutaka, Sato, Kengo, Sakakibara, Yasubumi

    Published 2010
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  10. 10
    Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures

    Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures by Saito, Yutaka, Sato, Kengo, Sakakibara, Yasubumi

    Published 2011
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  11. 11
    RNA secondary structure prediction using deep learning with thermodynamic integration

    RNA secondary structure prediction using deep learning with thermodynamic integration by Sato, Kengo, Akiyama, Manato, Sakakibara, Yasubumi

    Published 2021
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  12. 12
    Deep learning integration of molecular and interactome data for protein–compound interaction prediction

    Deep learning integration of molecular and interactome data for protein–compound interaction prediction by Watanabe, Narumi, Ohnuki, Yuuto, Sakakibara, Yasubumi

    Published 2021
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  13. 13
    A Max-Margin Model for Predicting Residue—Base Contacts in Protein–RNA Interactions

    A Max-Margin Model for Predicting Residue—Base Contacts in Protein–RNA Interactions by Kashiwagi, Shunya, Sato, Kengo, Sakakibara, Yasubumi

    Published 2021
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  14. 14
    Directed acyclic graph kernels for structural RNA analysis

    Directed acyclic graph kernels for structural RNA analysis by Sato, Kengo, Mituyama, Toutai, Asai, Kiyoshi, Sakakibara, Yasubumi

    Published 2008
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  15. 15
    Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

    Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes by Popendorf, Kris, Tsuyoshi, Hachiya, Osana, Yasunori, Sakakibara, Yasubumi

    Published 2010
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  16. 16
    Improved Measurements of RNA Structure Conservation with Generalized Centroid Estimators

    Improved Measurements of RNA Structure Conservation with Generalized Centroid Estimators by Okada, Yohei, Saito, Yutaka, Sato, Kengo, Sakakibara, Yasubumi

    Published 2011
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  17. 17
    MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

    MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads by Namiki, Toshiaki, Hachiya, Tsuyoshi, Tanaka, Hideaki, Sakakibara, Yasubumi

    Published 2012
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  18. 18
    An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds

    An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds by Nakamura, Masaomi, Hachiya, Tsuyoshi, Saito, Yutaka, Sato, Kengo, Sakakibara, Yasubumi

    Published 2012
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  19. 19
    Convolutional neural network based on SMILES representation of compounds for detecting chemical motif

    Convolutional neural network based on SMILES representation of compounds for detecting chemical motif by Hirohara, Maya, Saito, Yutaka, Koda, Yuki, Sato, Kengo, Sakakibara, Yasubumi

    Published 2018
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  20. 20
    Screening for candidate genes involved in the production of mouse subventricular zone proliferative cells and an estimation of their changes in evolutionary pressure during primate evolution

    Screening for candidate genes involved in the production of mouse subventricular zone proliferative cells and an estimation of their changes in evolutionary pressure during primate... by Tabata, Hidenori, Hachiya, Tsuyoshi, Nagata, Koh-ichi, Sakakibara, Yasubumi, Nakajima, Kazunori

    Published 2013
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