Ngā hua rapu kaituhi :: APM

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Enrichment Map – a Cytoscape app to visualize and explore OMICs pathway enrichment results mā Ruth Isserlin, Daniele Merico, Véronique Voisin, Gary D. Bader

I whakaputaina 2014

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2

The Biomolecular Interaction Network Database in PSI-MI 2.5 mā Ruth Isserlin, Rashad A. El-Badrawi, Gary D. Bader

I whakaputaina 2011

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Artigo

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WordCloud: a Cytoscape plugin to create a visual semantic summary of networks mā Layla Oesper, Daniele Merico, Ruth Isserlin, Gary D. Bader

I whakaputaina 2011

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Artigo

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AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations mā Mike Kucera, Ruth Isserlin, Arkady Arkhangorodsky, Gary D. Bader

I whakaputaina 2016

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Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation mā Daniele Merico, Ruth Isserlin, Oliver Stueker, Andrew Emili, Gary D. Bader

I whakaputaina 2010

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Artigo

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RCy3: Network biology using Cytoscape from within R mā Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico

I whakaputaina 2019

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RCy3: Network biology using Cytoscape from within R mā Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico

I whakaputaina 2019

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RCy3: Network biology using Cytoscape from within R mā Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico

I whakaputaina 2019

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9

Too many roads not taken mā A.M. Edwards, Ruth Isserlin, Gary D. Bader, Stephen V. Frye, Timothy M. Willson, Frank H. Yu

I whakaputaina 2011

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The human genome and drug discovery after a decade. Roads (still) not taken mā Ruth Isserlin, Gary D. Bader, A.M. Edwards, Stephen V. Frye, Timothy M. Willson, Frank H. Yu

I whakaputaina 2011

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11

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap mā Jüri Reimand, Ruth Isserlin, Véronique Voisin, Mike Kucera, Christian Tannus-Lopes, Asha Rostamianfar, Lina Wadi, Mona Meyer, J. D. Wong, Changjiang Xu, Daniele Merico, Gary D. Bader

I whakaputaina 2019

Whiwhi kuputuhi katoa
Artigo

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12

Cardioprotective Signature of Short-Term Caloric Restriction mā Hossein Noyan, Omar El-Mounayri, Ruth Isserlin, Sara Arab, Abdul Momen, Henry S. Cheng, Jun Wu, Talat Afroze, Ren‐Ke Li, Jason E. Fish, Gary D. Bader, Mansoor Husain

I whakaputaina 2015

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Constitutively active calcineurin induces cardiac endoplasmic reticulum stress and protects against apoptosis that is mediated by α-crystallin-B mā Nicolas Bousette, Shaan Chugh, Vincent Fong, Ruth Isserlin, Kyoung-Han Kim, Allen Volchuk, Peter H. Backx, Peter Liu, Thomas Kislinger, David H. MacLennan, Andrew Emili, Anthony O. Gramolini

I whakaputaina 2010

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Artigo

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Single-cell transcriptomic profiling of the aging mouse brain mā Methodios Ximerakis, Scott Lipnick, Brendan T. Innes, Sean Simmons, Xian Adiconis, Danielle Dionne, Brittany A. Mayweather, Lan Nguyễn, Zachary Niziolek, Ceren Ozek, Vincent L. Butty, Ruth Isserlin, Sean M. Buchanan, Stuart S. Levine, Aviv Regev, Gary D. Bader, Joshua Z. Levin, Lee L. Rubin

I whakaputaina 2019

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Artigo

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A Lentiviral Functional Proteomics Approach Identifies Chromatin Remodeling Complexes Important for the Induction of Pluripotency mā Anthony B. Mak, Zuyao Ni, Johannes A. Hewel, Ginny I. Chen, Guoqing Zhong, Konstantina Karamboulas, Kim Blakely, Sandra Smiley, Edyta Marcon, Denitza Roudeva, Joyce Li, Jonathan B. Olsen, Cuihong Wan, Thanuja Punna, Ruth Isserlin, Sergei Chetyrkin, Anne‐Claude Gingras, Andrew Emili, Jack Greenblatt, Jason Moffat

I whakaputaina 2010

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Comparative Proteomics Profiling of a Phospholamban Mutant Mouse Model of Dilated Cardiomyopathy Reveals Progressive Intracellular Stress Responses mā Anthony O. Gramolini, Thomas Kislinger, Rasoul Alikhani-Koopaei, Vincent Fong, Natalie Thompson, Ruth Isserlin, Parveen Sharma, Gavin Y. Oudit, Maria G. Trivieri, Ailís Fagan, Anitha Kannan, Desmond G. Higgins, Hendrik Huedig, George P. Hess, Sara Arab, Jonathan G. Seidman, Christine E. Seidman, Brendan J. Frey, Marc D. Perry, Peter H. Backx, Peter P. Liu, David H. MacLennan, Andrew Emili

I whakaputaina 2007

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Integration of biological networks and gene expression data using Cytoscape mā Melissa Cline, Michael Smoot, Ethan Cerami, Allan Kuchinsky, Nerius Landys, Christopher T. Workman, Rowan H. Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Groß, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John H. Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Pengliang Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy Warner, Trey Ideker, Gary D. Bader

I whakaputaina 2007

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Mammary molecular portraits reveal lineage-specific features and progenitor cell vulnerabilities mā Alison E. Casey, Ankit Sinha, Rajat Singhania, Julie Livingstone, Paul Waterhouse, Pirashaanthy Tharmapalan, Jennifer Cruickshank, Mona Shehata, Erik Drysdale, Hui Fang, Hye‐Yeon Kim, Ruth Isserlin, Swneke D. Bailey, Tiago da Silva Medina, Geneviève Deblois, Yu-Jia Shiah, Dalia Baršytė-Lovejoy, Stefan O.P. Hofer, Gary D. Bader, Mathieu Lupien, C.H. Arrowsmith, Stefan Knapp, Daniel D. De Carvalho, Hal K. Berman, Paul C. Boutros, Thomas Kislinger, Rama Khokha

I whakaputaina 2018

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miR-126 Regulates Distinct Self-Renewal Outcomes in Normal and Malignant Hematopoietic Stem Cells mā Eric R. Lechman, Bernhard Gentner, Stanley W.K. Ng, Erwin M. Schoof, Peter van Galen, Theodore A. Kennedy, Silvia Nucera, Fabio Ciceri, Kerstin B. Kaufmann, Naoya Takayama, Stephanie M. Dobson, Aaron C. Trotman-Grant, Gabriela Krivdova, Janneke Elzinga, Amanda Mitchell, Björn Nilsson, Karin G. Hermans, Kolja Eppert, René Marke, Ruth Isserlin, Véronique Voisin, Gary D. Bader, Peter W. Zandstra, Todd R. Golub, Benjamin L. Ebert, Jun Lü, Mark D. Minden, Jean Wang, Luigi Naldini, John E. Dick

I whakaputaina 2016

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20

Ectopic miR-125a Expression Induces Long-Term Repopulating Stem Cell Capacity in Mouse and Human Hematopoietic Progenitors mā Edyta E. Wojtowicz, Eric R. Lechman, Karin G. Hermans, Erwin M. Schoof, Erno Wienholds, Ruth Isserlin, Peter A. van Veelen, Mathilde Broekhuis, George M. C. Janssen, Aaron C. Trotman-Grant, Stephanie M. Dobson, Gabriela Krivdova, Jantje Elzinga, Theodore A. Kennedy, Olga I. Gan, Ankit Sinha, Vladimir Ignatchenko, Thomas Kislinger, Bertien Dethmers-Ausema, Ellen Weersing, Mir Farshid Alemdehy, Hans W. J. de Looper, Gary D. Bader, Martha Ritsema, Stefan J. Erkeland, Leonid Bystrykh, John E. Dick, Gerald de Haan

I whakaputaina 2016

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Artigo

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