Resultats de la cerca - Rongxin Fang

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  1. 1
    Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq

    Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq per Rongxin Fang, Miao Yu, Guoqiang Li, Sora Chee, Tristin Liu, Anthony D. Schmitt, Bing Ren

    Publicat 2016
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  2. 2
    Joint profiling of DNA methylation and chromatin architecture in single cells

    Joint profiling of DNA methylation and chromatin architecture in single cells per Guoqiang Li, Yaping Liu, Yanxiao Zhang, Naoki Kubo, Miao Yu, Rongxin Fang, Manolis Kellis, Bing Ren

    Publicat 2019
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  3. 3
    MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

    MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments per Ivan Jurić, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yanxiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Ming Hu

    Publicat 2019
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  4. 4
    Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH

    Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH per Rongxin Fang, Chenglong Xia, Jennie Close, Meng Zhang, Jiang He, Zhengkai Huang, Aaron R. Halpern, Brian Long, Jeremy A. Miller, Ed S. Lein, Xiaowei Zhuang

    Publicat 2022
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  5. 5
    Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells

    Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells per Naoki Kubo, Haruhiko Ishii, David U. Gorkin, Franz Meitinger, Xiong Xiong, Rongxin Fang, Tristin Liu, Zhen Ye, Bin Li, Jesse R. Dixon, Arshad Desai, Huimin Zhao, Bing Ren

    Publicat 2017
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  6. 6
    Fast and Accurate Clustering of Single Cell Epigenomes Reveals Cis-Regulatory Elements in Rare Cell Types

    Fast and Accurate Clustering of Single Cell Epigenomes Reveals Cis-Regulatory Elements in Rare Cell Types per Rongxin Fang, Sebastian Preißl, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K. Shiau, Eran A. Mukamel, Yanxiao Zhang, M. Margarita Behrens, Joseph R. Ecker, Bing Ren

    Publicat 2019
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  7. 7
    SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data

    SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data per Miao Yu, Armen Abnousi, Yanxiao Zhang, Guoqiang Li, Lindsay Lee, Ziyin Chen, Rongxin Fang, Taylor M. Lagler, Yuchen Yang, Jia Wen, Quan Sun, Yun Li, Bing Ren, Ming Hu

    Publicat 2021
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  8. 8
    A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells

    A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells per Yarui Diao, Rongxin Fang, Bin Li, Zhipeng Meng, Juntao Yu, Yunjiang Qiu, Kimberly C. Lin, Hui Huang, Tristin Liu, Ryan J. Marina, Inkyung Jung, Yin Shen, Kun‐Liang Guan, Bing Ren

    Publicat 2017
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  9. 9
    Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation

    Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation per Sebastian Preißl, Rongxin Fang, Hui Huang, Yuan Zhao, Ramya Raviram, David U. Gorkin, Yanxiao Zhang, Brandon C. Sos, Veena Afzal, Diane E. Dickel, Samantha Kuan, Axel Visel, L Pennacchio, Kun Zhang, Bing Ren

    Publicat 2018
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  10. 10
    SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

    SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq per Rongxin Fang, Sebastian Preißl, Yang Li, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K. Shiau, Xinzhu Zhou, Fangming Xie, Eran A. Mukamel, Kai Zhang, Yanxiao Zhang, M. Margarita Behrens, Joseph R. Ecker, Bing Ren

    Publicat 2019
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  11. 11
    Comprehensive analysis of single cell ATAC-seq data with SnapATAC

    Comprehensive analysis of single cell ATAC-seq data with SnapATAC per Rongxin Fang, Sebastian Preißl, Yang Li, Xiaomeng Hou, Jacinta Lucero, Xinxin Wang, Amir Motamedi, Andrew K. Shiau, Xinzhu Zhou, Fangming Xie, Eran A. Mukamel, Kai Zhang, Yanxiao Zhang, M. Margarita Behrens, Joseph R. Ecker, Bing Ren

    Publicat 2021
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  12. 12
    Chromothripsis drives the evolution of gene amplification in cancer

    Chromothripsis drives the evolution of gene amplification in cancer per Ofer Shoshani, Simon Brunner, Rona Yaeger, Peter Ly, Yael Nechemia‐Arbely, Dong Hyun Kim, Rongxin Fang, Guillaume A. Castillon, Miao Yu, Julia S. Z. Li, Ying Sun, Mark H. Ellisman, Bing Ren, Peter J. Campbell, Don W. Cleveland

    Publicat 2020
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  13. 13
    Hyper-Editing of Cell-Cycle Regulatory and Tumor Suppressor RNA Promotes Malignant Progenitor Propagation

    Hyper-Editing of Cell-Cycle Regulatory and Tumor Suppressor RNA Promotes Malignant Progenitor Propagation per Qingfei Jiang, Jane Isquith, M Zipeto, Raymond Diep, Jessica Pham, Nathaniel P. Delos Santos, Eduardo Reynoso, Julisia Chau, Heather Leu, Elisa Lazzari, Etienne Melese, Wenxue Ma, Rongxin Fang, Mark D. Minden, Sheldon Morris, Bing Ren, Gabriel Pineda, Frida Holm, Catriona Jamieson

    Publicat 2019
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  14. 14
    Single-cell chromatin accessibility identifies pancreatic islet cell type– and state-specific regulatory programs of diabetes risk

    Single-cell chromatin accessibility identifies pancreatic islet cell type– and state-specific regulatory programs of diabetes risk per Joshua Chiou, Chun Zeng, Cheng Zhang, Jee Yun Han, Michael Schlichting, Michael Miller, Robert Mendez, Serina Huang, Jinzhao Wang, Yinghui Sui, Allison Deogaygay, Mei-Lin Okino, Yunjiang Qiu, Ying Sun, Parul Kudtarkar, Rongxin Fang, Sebastian Preißl, Maike Sander, David U. Gorkin, Kyle J. Gaulton

    Publicat 2021
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  15. 15
    Spatiotemporal DNA methylome dynamics of the developing mouse fetus

    Spatiotemporal DNA methylome dynamics of the developing mouse fetus per Yupeng He, Manoj Hariharan, David U. Gorkin, Diane E. Dickel, Chongyuan Luo, Rosa Castanon, Joseph R. Nery, Ah Young Lee, Yuan Zhao, Hui Huang, Brian A. Williams, Diane Trout, Henry Amrhein, Rongxin Fang, Huaming Chen, Bin Li, Axel Visel, L Pennacchio, Bing Ren, Joseph R. Ecker

    Publicat 2020
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  16. 16
    Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function

    Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function per Verena M. Link, Sascha H. Duttke, Hyun Bae Chun, Inge R. Holtman, Emma M. Westin, Marten A. Hoeksema, Yohei Abe, Dylan Skola, Casey E. Romanoski, Jenhan Tao, Gregory J. Fonseca, Ty D. Troutman, Nathanael J. Spann, Tobias Strid, Mashito Sakai, Miao Yu, Rong Hu, Rongxin Fang, Dirk Metzler, Bing Ren, Christopher K. Glass

    Publicat 2018
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  17. 17
    Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity

    Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity per Ramya Raviram, Anugraha Raman, Sebastian Preißl, Jianfang Ning, Shaoping Wu, Tomoyuki Koga, Kai Zhang, Cameron Brennan, Chenxu Zhu, Jens Luebeck, Kinsey Van Deynze, Jee Yun Han, Xiaomeng Hou, Zhen Ye, Anna K. Mischel, Yang Eric Li, Rongxin Fang, Tomas Baback, Joshua W. Mugford, Claudia Z. Han, Christopher K. Glass, Cathy L. Barr, Paul S. Mischel, Vineet Bafna, Laure Escoubet, Bing Ren, Clark C. Chen

    Publicat 2023
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  18. 18
    An atlas of gene regulatory elements in adult mouse cerebrum

    An atlas of gene regulatory elements in adult mouse cerebrum per Yang Eric Li, Sebastian Preißl, Xiaomeng Hou, Ziyang Zhang, Kai Zhang, Yunjiang Qiu, Olivier Poirion, Bin Li, Joshua Chiou, Hanqing Liu, António Pinto‐Duarte, Naoki Kubo, Xiaoyu Yang, Rongxin Fang, Xinxin Wang, Jee Yun Han, Jacinta Lucero, Yiming Yan, Michael Miller, Samantha Kuan, David U. Gorkin, Kyle J. Gaulton, Yin Shen, Michael Nunn, Eran A. Mukamel, M. Margarita Behrens, Joseph R. Ecker, Bing Ren

    Publicat 2021
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  19. 19
    Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

    Single nucleus multi-omics identifies human cortical cell regulatory genome diversity per Chongyuan Luo, Hanqing Liu, Fangming Xie, Ethan J. Armand, Kimberly Siletti, Trygve E. Bakken, Rongxin Fang, Wayne I. Doyle, Tim Stuart, Rebecca D. Hodge, Lijuan Hu, Bang-An Wang, Zhuzhu Zhang, Sebastian Preißl, Dong-Sung Lee, Jingtian Zhou, Sheng-Yong Niu, Rosa Castanon, Anna Bartlett, Angeline Rivkin, Xinxin Wang, Jacinta Lucero, Joseph R. Nery, David A. Davis, Deborah C. Mash, Rahul Satija, Jesse R. Dixon, Sten Linnarsson, Ed S. Lein, M. Margarita Behrens, Bing Ren, Eran A. Mukamel, Joseph R. Ecker

    Publicat 2022
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  20. 20
    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

    An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types per Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S. Adkins, Andrew Aldridge, Seth A. Ament, António Pinto‐Duarte, Anna Bartlett, M. Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Tommaso Biancalani, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Heather H. Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L. Dougherty, Wayne I. Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle Giglio, Jeff Goldy, Mike Hawrylycz, Hector Roux de Bézieux, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jonathan Crabtree, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem Nadaf, Joseph R. Nery, Sheng-Yong Niu, Joshua Orvis, Julia Osteen, Thanh Pham, Olivier Poirion, Sebastian Preißl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline Rivkin, Kimberly A. Smith, Kelly Street, Josef Šulc, Thuc Nghi Nguyen, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Valentine Svensson, Charles Vanderburg, Vasilis Ntranos, Cindy T. J. van Velthoven, Xinxin Wang, Owen White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel

    Publicat 2020
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