Search Results - Ramya Raviram

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  1. 1
    Breaking TADs: Insights into Hierarchical Genome Organization

    Breaking TADs: Insights into Hierarchical Genome Organization by Pedro P. Rocha, Ramya Raviram, Richard Bonneau, Jane A. Skok

    Published 2015
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  2. 2
    Long-Range Regulation of V(D)J Recombination

    Long-Range Regulation of V(D)J Recombination by Charlotte Proudhon, Bingtao Hao, Ramya Raviram, Julie Chaumeil, Jane A. Skok

    Published 2015
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  3. 3
    CTCF establishes discrete functional chromatin domains at the <i>Hox</i> clusters during differentiation

    CTCF establishes discrete functional chromatin domains at the <i>Hox</i> clusters during differentiation by Varun Narendra, Pedro P. Rocha, Disi An, Ramya Raviram, Jane A. Skok, Esteban O. Mazzoni, Danny Reinberg

    Published 2015
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  4. 4
    CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci

    CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci by Yi Fu, Pedro P. Rocha, Vincent Luo, Ramya Raviram, Yan Deng, Esteban O. Mazzoni, Jane A. Skok

    Published 2016
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  5. 5
    Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions

    Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions by Tingting Jiang, Ramya Raviram, Valentina Snetkova, Pedro P. Rocha, Charlotte Proudhon, Sana Badri, Richard Bonneau, Jane A. Skok, Yuval Kluger

    Published 2016
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  6. 6
    Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase

    Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase by Lucas Patel, Rhea Kang, Scott Rosenberg, Yunjiang Qiu, Ramya Raviram, Sora Chee, Rong Hu, Bing Ren, Francesca Cole, Kevin D. Corbett

    Published 2019
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  7. 7
    Stage-specific epigenetic regulation of CD4 expression by coordinated enhancer elements during T cell development

    Stage-specific epigenetic regulation of CD4 expression by coordinated enhancer elements during T cell development by Priya D. Issuree, Kenneth Day, Christy Au, Ramya Raviram, Paul Zappile, Jane A. Skok, Hai‐Hui Xue, R Myers, Dan R. Littman

    Published 2018
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  8. 8
    MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

    MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments by Ivan Jurić, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yanxiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Ming Hu

    Published 2019
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  9. 9
    Active and Inactive Enhancers Cooperate to Exert Localized and Long-Range Control of Gene Regulation

    Active and Inactive Enhancers Cooperate to Exert Localized and Long-Range Control of Gene Regulation by Charlotte Proudhon, Valentina Snetkova, Ramya Raviram, Camille Lobry, Sana Badri, Tingting Jiang, Bingtao Hao, Thomas Trimarchi, Yuval Kluger, Iannis Aifantis, Richard Bonneau, Jane A. Skok

    Published 2016
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  10. 10
    4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments

    4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments by Ramya Raviram, Pedro P. Rocha, Christian L. Müller, Emily R. Miraldi, Sana Badri, Yi Fu, Emily Swanzey, Charlotte Proudhon, Valentina Snetkova, Richard Bonneau, Jane A. Skok

    Published 2016
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  11. 11
    Capturing the Onset of PRC2-Mediated Repressive Domain Formation

    Capturing the Onset of PRC2-Mediated Repressive Domain Formation by Ozgur Oksuz, Varun Narendra, Chul‐Hwan Lee, Nicolas Descostes, Gary LeRoy, Ramya Raviram, Lili M. Blumenberg, Kelly R. Karch, Pedro P. Rocha, Benjamin A. García, Jane A. Skok, Danny Reinberg

    Published 2018
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  12. 12
    NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling

    NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling by Sudhir Chowdhry, Ciro Zanca, Utkrisht Rajkumar, Tomoyuki Koga, Yarui Diao, Ramya Raviram, Feng Liu, Kristen M. Turner, Huijun Yang, Elizabeth Brunk, Junfeng Bi, Frank B. Furnari, Vineet Bafna, Bing Ren, Paul S. Mischel

    Published 2019
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  13. 13
    Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation

    Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation by Sebastian Preißl, Rongxin Fang, Hui Huang, Yuan Zhao, Ramya Raviram, David U. Gorkin, Yanxiao Zhang, Brandon C. Sos, Veena Afzal, Diane E. Dickel, Samantha Kuan, Axel Visel, L Pennacchio, Kun Zhang, Bing Ren

    Published 2018
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  14. 14
    Cohesin loss alters adult hematopoietic stem cell homeostasis, leading to myeloproliferative neoplasms

    Cohesin loss alters adult hematopoietic stem cell homeostasis, leading to myeloproliferative neoplasms by Jasper Mullenders, Beatriz Aranda-Orgillés, Priscillia Lhoumaud, Matthew D. Keller, Juhee Pae, Kun Wang, Clarisse Kayembe, Pedro P. Rocha, Ramya Raviram, Yixiao Gong, Prem K. Premsrirut, Aristotelis Tsirigos, Richard Bonneau, Jane A. Skok, Luisa Cimmino, Daniela Hoehn, Iannis Aifantis

    Published 2015
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  15. 15
    Transcriptional regulatory control of mammalian nephron progenitors revealed by multi-factor cistromic analysis and genetic studies

    Transcriptional regulatory control of mammalian nephron progenitors revealed by multi-factor cistromic analysis and genetic studies by Lori L. O’Brien, Qiuyu Guo, Emad Bahrami‐Samani, Joo‐Seop Park, Sean M. Hasso, Young‐Jin Lee, Alan Fang, Albert D. Kim, Jinjin Guo, Trudy M. Hong, Kevin A. Peterson, Scott Lozanoff, Ramya Raviram, Bing Ren, Ben Fogelgren, Andrew D. Smith, Anton Valouev, Andrew P. McMahon

    Published 2018
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  16. 16
    MED12 Regulates HSC-Specific Enhancers Independently of Mediator Kinase Activity to Control Hematopoiesis

    MED12 Regulates HSC-Specific Enhancers Independently of Mediator Kinase Activity to Control Hematopoiesis by Beatriz Aranda-Orgillés, Ricardo Saldaña-Meyer, Eric Wang, Eirini Trompouki, Anne Fassl, Stephanie Lau, Jasper Mullenders, Pedro P. Rocha, Ramya Raviram, María Guillamot, María Sánchez-Díaz, Kun Wang, Clarisse Kayembe, Nan Zhang, Leonela Amoasii, Avik Choudhuri, Jane A. Skok, Markus Schöber, Danny Reinberg, Piotr Siciński, Heinrich Schrewe, Aristotelis Tsirigos, Leonard I. Zon, Iannis Aifantis

    Published 2016
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  17. 17
    Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity

    Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity by Ramya Raviram, Anugraha Raman, Sebastian Preißl, Jianfang Ning, Shaoping Wu, Tomoyuki Koga, Kai Zhang, Cameron Brennan, Chenxu Zhu, Jens Luebeck, Kinsey Van Deynze, Jee Yun Han, Xiaomeng Hou, Zhen Ye, Anna K. Mischel, Yang Eric Li, Rongxin Fang, Tomas Baback, Joshua W. Mugford, Claudia Z. Han, Christopher K. Glass, Cathy L. Barr, Paul S. Mischel, Vineet Bafna, Laure Escoubet, Bing Ren, Clark C. Chen

    Published 2023
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  18. 18
    Circular ecDNA promotes accessible chromatin and high oncogene expression

    Circular ecDNA promotes accessible chromatin and high oncogene expression by Sihan Wu, Kristen M. Turner, Nam Nguyen, Ramya Raviram, Marcella L. Erb, Jennifer Santini, Jens Luebeck, Utkrisht Rajkumar, Yarui Diao, Bin Li, Wenjing Zhang, Nathan M. Jameson, M. Ryan Corces, Jeffrey M. Granja, Xingqi Chen, Ceyda Çoruh, Armen Abnousi, Jack Houston, Zhen Ye, Rong Hu, Miao Yu, Hoon Kim, Julie A. Law, Roel G.W. Verhaak, Ming Hu, Frank B. Furnari, Howard Y. Chang, Bing Ren, Vineet Bafna, Paul S. Mischel

    Published 2019
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  19. 19
    Low-Grade Astrocytoma Mutations in IDH1, P53, and ATRX Cooperate to Block Differentiation of Human Neural Stem Cells via Repression of SOX2

    Low-Grade Astrocytoma Mutations in IDH1, P53, and ATRX Cooperate to Block Differentiation of Human Neural Stem Cells via Repression of SOX2 by Aram S. Modrek, Danielle Golub, Themasap A. Khan, Devin Bready, Jod Prado, Christopher Bowman, Jingjing Deng, Guoan Zhang, Pedro P. Rocha, Ramya Raviram, Charalampos Lazaris, James M. Stafford, Gary LeRoy, Michael Kader, Joravar Dhaliwal, N. Sumru Bayın, Joshua D. Frenster, Jonathan Serrano, Luis Chiriboga, Rabaa Baitalmal, Gouri J. Nanjangud, S. Andrew, John G. Golfinos, Jing Wang, Matthias A. Karajannis, Richard Bonneau, Danny Reinberg, Aristotelis Tsirigos, David Zagzag, Matija Snuderl, Jane A. Skok, Thomas A. Neubert, Dimitris G. Placantonakis

    Published 2017
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  20. 20
    Epigenetic dysregulation from chromosomal transit in micronuclei

    Epigenetic dysregulation from chromosomal transit in micronuclei by Albert S. Agustinus, Duaa H. Al-Rawi, Bhargavi Dameracharla, Ramya Raviram, Bailey S. C. L. Jones, Stephanie Stransky, Lorenzo Scipioni, Jens Luebeck, Melody Di Bona, Danguolė Norkūnaitė, Robert M. Myers, Mercedes A. Duran Paez, Seongmin Choi, Britta Weigelt, Shira Yomtoubian, Andrew McPherson, Eléonore Toufektchan, Kristina Keuper, Paul S. Mischel, Vivek Mittal, Sohrab P. Shah, John Maciejowski, Zuzana Štorchová, Enrico Gratton, Peter Ly, Dan A. Landau, Mathieu F. Bakhoum, Richard P. Koche, Simone Sidoli, Vineet Bafna, Yael David, Samuel F. Bakhoum

    Published 2023
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