Search Results - Radhakrishnan Sabarinathan

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  1. 1
    Local Determinants of the Mutational Landscape of the Human Genome

    Local Determinants of the Mutational Landscape of the Human Genome by Abel González-Pérez, Radhakrishnan Sabarinathan, Núria López-Bigas

    Published 2019
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  2. 2
    Nucleotide excision repair is impaired by binding of transcription factors to DNA

    Nucleotide excision repair is impaired by binding of transcription factors to DNA by Radhakrishnan Sabarinathan, Loris Mularoni, Jordi Deu-Pons, Abel González-Pérez, Núria López-Bigas

    Published 2016
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  3. 3
    OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations

    OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations by Loris Mularoni, Radhakrishnan Sabarinathan, Jordi Deu-Pons, Abel González-Pérez, Núria López-Bigas

    Published 2016
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  4. 4
    Reduced mutation rate in exons due to differential mismatch repair

    Reduced mutation rate in exons due to differential mismatch repair by Joan Frigola, Radhakrishnan Sabarinathan, Loris Mularoni, Ferran Muiños, Abel González-Pérez, Núria López-Bigas

    Published 2017
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  5. 5
    <scp>RNA</scp> snp: Efficient Detection of Local <scp>RNA</scp> Secondary Structure Changes Induced by <scp>SNP</scp> s

    <scp>RNA</scp> snp: Efficient Detection of Local <scp>RNA</scp> Secondary Structure Changes Induced by <scp>SNP</scp> s by Radhakrishnan Sabarinathan, Hakim Tafer, Stefan E. Seemann, Ivo L. Hofacker, Peter F. Stadler, Jan Gorodkin

    Published 2013
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  6. 6
    The RNAsnp web server: predicting SNP effects on local RNA secondary structure

    The RNAsnp web server: predicting SNP effects on local RNA secondary structure by Radhakrishnan Sabarinathan, Hakim Tafer, Stefan E. Seemann, Ivo L. Hofacker, Peter F. Stadler, Jan Gorodkin

    Published 2013
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  7. 7
    RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs

    RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs by Radhakrishnan Sabarinathan, Hakim Tafer, Stefan E. Seemann, Ivo L. Hofacker, Peter F. Stadler, Jan Gorodkin

    Published 2013
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  8. 8
    Somatic and Germline Mutation Periodicity Follow the Orientation of the DNA Minor Groove around Nucleosomes

    Somatic and Germline Mutation Periodicity Follow the Orientation of the DNA Minor Groove around Nucleosomes by Oriol Pich, Ferran Muiños, Radhakrishnan Sabarinathan, Iker Reyes-Salazar, Abel González-Pérez, Núria López-Bigas

    Published 2018
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  9. 9
    Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers

    Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers by James B. Stewart, Babak Alaei-Mahabadi, Radhakrishnan Sabarinathan, Tore Samuelsson, Jan Gorodkin, Claes M. Gustafsson, Erik Larsson

    Published 2015
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  10. 10
    sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

    sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes by Jayavel Sridhar, Suryanarayanan Ramkumar Narmada, Radhakrishnan Sabarinathan, Hong‐Yu Ou, Zixin Deng, K. Sekar, Ziauddin Ahamed Rafi, Kumar Rajakumar

    Published 2010
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  11. 11
    Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries

    Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries by Zubairul Islam, Bharath Saravanan, Kaivalya Walavalkar, Umer Farooq, Anurag Kumar Singh, Radhakrishnan Sabarinathan, Jitendra Thakur, Awadhesh Pandit, Steven Henikoff, Dimple Notani

    Published 2023
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  12. 12
    A Pan-cancer Landscape of Interactions between Solid Tumors and Infiltrating Immune Cell Populations

    A Pan-cancer Landscape of Interactions between Solid Tumors and Infiltrating Immune Cell Populations by David Tamborero, Carlota Rubio-Pérez, Ferran Muiños, Radhakrishnan Sabarinathan, Josep M. Piulats, Aura Muntasell, Rodrigo Dienstmann, Núria López-Bigas, Abel González-Pérez

    Published 2018
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  13. 13
    IL-4 orchestrates STAT6-mediated DNA demethylation leading to dendritic cell differentiation

    IL-4 orchestrates STAT6-mediated DNA demethylation leading to dendritic cell differentiation by Roser Vento‐Tormo, Carlos Company, Javier Rodríguez‐Ubreva, Lorenzo de la Rica, José Urquiza, Biola M. Javierre, Radhakrishnan Sabarinathan, Ana Luque, Manel Esteller, Josep M. Aran, Damiana Álvarez‐Errico, Esteban Ballestar

    Published 2016
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  14. 14
    A rare variant of African ancestry activates 8q24 lncRNA hub by modulating cancer associated enhancer

    A rare variant of African ancestry activates 8q24 lncRNA hub by modulating cancer associated enhancer by Kaivalya Walavalkar, Bharath Saravanan, Anurag Kumar Singh, Ranveer Singh Jayani, Ashwin Nair, Umer Farooq, Zubairul Islam, Deepanshu Soota, Rajat Mann, P. V. Shivaprasad, Matthew L. Freedman, Radhakrishnan Sabarinathan, Christopher A. Haiman, Dimple Notani

    Published 2020
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  15. 15
    Functional analysis of structural variants in single cells using Strand-seq

    Functional analysis of structural variants in single cells using Strand-seq by Hyobin Jeong, Karen Grimes, Kerstin K. Rauwolf, Peter‐Martin Bruch, Tobias Rausch, Patrick Hasenfeld, Eva Benito, Tobias Roider, Radhakrishnan Sabarinathan, David Porubský, Sophie A. Herbst, Büşra Erarslan-Uysal, Johann-Christoph Jann, Tobias Marschall, Daniel Nowak, Jean‐Pierre Bourquin, Andreas E. Kulozik, Sascha Dietrich, Beat Bornhäuser, Ashley D. Sanders, Jan O. Korbel

    Published 2022
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  16. 16
    The Repertoire of Mutational Signatures in Human Cancer

    The Repertoire of Mutational Signatures in Human Cancer by Ludmil B. Alexandrov, Jaegil Kim, Nicholas J. Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R. Covington, Dmitry A. Gordenin, Erik N. Bergstrom, S. M. Ashiqul Islam, Núria López-Bigas, Leszek J. Klimczak, John R. McPherson, Sandro Morganella, Radhakrishnan Sabarinathan, David A. Wheeler, Ville Mustonen, Gad Getz, Steve Rozen, Michael R. Stratton

    Published 2018
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  17. 17
    The whole-genome panorama of cancer drivers

    The whole-genome panorama of cancer drivers by Radhakrishnan Sabarinathan, Oriol Pich, Iñigo Martincorena, Carlota Rubio-Pérez, Malene Juul, Jeremiah A. Wala, Steven E. Schumacher, Ofer Shapira, Nikos Sidiropoulos, Sebastian M. Waszak, David Tamborero, Loris Mularoni, Esther Rheinbay, Henrik Hornshøj, Jordi Deu-Pons, Ferran Muiños, Johanna Bertl, Qianyun Guo, Chad J. Creighton, Joachim Weischenfeldt, Jan Korbel, Gad Getz, Peter J. Campbell, Jakob Skou Pedersen, Rameen Beroukhim, Abel Pérez‐González, Núria López-Bigas

    Published 2017
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  18. 18
    Whole-genome landscapes of major melanoma subtypes

    Whole-genome landscapes of major melanoma subtypes by Nicholas K. Hayward, James S. Wilmott, Nicola Waddell, Peter A. Johansson, Matthew A. Field, Kátia Nones, Ann‐Marie Patch, Hojabr Kakavand, Ludmil B. Alexandrov, Hazel Burke, Valerie Jakrot, Stephen H. Kazakoff, Oliver Holmes, Conrad Leonard, Radhakrishnan Sabarinathan, Loris Mularoni, Scott Wood, Qinying Xu, Nick M. Waddell, Varsha Tembe, Gulietta M. Pupo, Ricardo De Paoli‐Iseppi, Ricardo E. Vilain, Ping Shang, Loretta M. S. Lau, Rebecca A. Dagg, Sarah-Jane Schramm, Antonia L. Pritchard, Ken Dutton‐Regester, Felicity Newell, Anna Fitzgerald, Catherine A. Shang, Sean M. Grimmond, Hilda A. Pickett, Jean Yang, Jonathan R. Stretch, Andreas Behren, Richard Kefford, Peter Hersey, Georgina V. Long, Jonathan Cebon, Mark Shackleton, Andrew J. Spillane, Robyn P.M. Saw, Núria López-Bigas, John V. Pearson, John F. Thompson, Richard A. Scolyer, Graham J. Mann

    Published 2017
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  19. 19
    The repertoire of mutational signatures in human cancer

    The repertoire of mutational signatures in human cancer by Ludmil B. Alexandrov, Jaegil Kim, Nicholas J. Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R. Covington, Dmitry A. Gordenin, Erik N. Bergstrom, S. M. Ashiqul Islam, Núria López-Bigas, Leszek J. Klimczak, John R. McPherson, Sandro Morganella, Radhakrishnan Sabarinathan, David A. Wheeler, Ville Mustonen, Ludmil B. Alexandrov, Erik N. Bergstrom, Arnoud Boot, Paul C. Boutros, Kin Chan, Kyle R. Covington, Akihiro Fujimoto, Gad Getz, Dmitry A. Gordenin, Nicholas J. Haradhvala, Mi Ni Huang, S. M. Ashiqul Islam, Marat D. Kazanov, Jaegil Kim, Leszek J. Klimczak, Núria López-Bigas, Michael S. Lawrence, Iñigo Martincorena, John R. McPherson, Sandro Morganella, Ville Mustonen, Hidewaki Nakagawa, Alvin Wei Tian Ng, Paz Polak, Stephenie D. Prokopec, Steven A. Roberts, Steve Rozen, Radhakrishnan Sabarinathan, Natalie Saini, Tatsuhiro Shibata, Yuichi Shiraishi, Michael R. Stratton, Bin Tean Teh, Ignacio Vázquez-Garćıa, David A. Wheeler, Yang Wu, Fouad Yousif, Willie Yu, Gad Getz, Steve Rozen, Michael R. Stratton, Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams, Nishant Agrawal, Keun Soo Ahn, Sung‐Min Ahn, Hiroshi Aikata, Rehan Akbani, Kadir C. Akdemir, Hikmat Al‐Ahmadie, Sultan T. Al‐Sedairy, Fátima Al‐Shahrour, Malik Alawi, Monique Albert, Kenneth Aldape, Ludmil B. Alexandrov, Adrian Ally, Kathryn Alsop, Eva G. Álvarez, Fernanda Amary, Samirkumar B. Amin, Brice Aminou, Ole Ammerpohl, Matthew J. Anderson, Yeng Ang, Davide Antonello, Pavana Anur, Samuel Aparício, Elizabeth L. Appelbaum, Yasuhito Arai, Axel Aretz, Koji Arihiro, Shun‐ichi Ariizumi, Joshua Armenia, Laurent Arnould, L. Sylvia, Yassen Assenov, Gurnit Atwal, Sietse Aukema

    Published 2020
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  20. 20
    Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

    Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes by Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Pedersen, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Johanna Bertl, Priyanka Dhingra, Klev Diamanti, Abel González-Pérez, Qianyun Guo, Nicholas J. Haradhvala, Keren Isaev, Malene Juul, Jan Komorowski, Sushant Kumar, Donghoon Lee, Lucas Lochovsky, Eric Minwei Liu, Oriol Pich, David Tamborero, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Jing Zhang, Keith A. Boroevich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, Nuno A. Fonseca, Mark P. Hamilton, Chen Hong, André Kahles, Young-Wook Kim, Kjong-Van Lehmann, Todd A. Johnson, Abdullah Kahraman, Keunchil Park, Gordon Saksena, Lina Sieverling, Nicholas A. Sinnott‐Armstrong, Peter J. Campbell, Asger Hobolth, Manolis Kellis, Michael S. Lawrence, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Núria López-Bigas, Iñigo Martincorena, Jakob Skou Pedersen, Gad Getz

    Published 2017
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