Rezultati - R. Dustin Schaeffer

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  1. 1
    Protein folds and protein folding

    Protein folds and protein folding od R. Dustin Schaeffer, Valerie Daggett

    Izdano 2010
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  2. 2
    Combining experiment and simulation in protein folding: closing the gap for small model systems

    Combining experiment and simulation in protein folding: closing the gap for small model systems od R. Dustin Schaeffer, Alan R. Fersht, Valerie Daggett

    Izdano 2008
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  3. 3
    Manual classification strategies in the <scp>ECOD</scp> database

    Manual classification strategies in the <scp>ECOD</scp> database od Hua Cheng, Yuxing Liao, R. Dustin Schaeffer, Nick V. Grishin

    Izdano 2015
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  4. 4
    ECOD: new developments in the evolutionary classification of domains

    ECOD: new developments in the evolutionary classification of domains od R. Dustin Schaeffer, Yuxing Liao, Hua Cheng, Nick V. Grishin

    Izdano 2016
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  5. 5
    <scp>DPAM</scp>: A domain parser for <scp>AlphaFold</scp> models

    <scp>DPAM</scp>: A domain parser for <scp>AlphaFold</scp> models od Jing Zhang, R. Dustin Schaeffer, Jesse Durham, Qian Cong, Nick V. Grishin

    Izdano 2022
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  6. 6
    Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14)

    Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14) od Lisa N. Kinch, Jimin Pei, Andriy Kryshtafovych, R. Dustin Schaeffer, Nick V. Grishin

    Izdano 2021
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  7. 7
    A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit

    A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit od Kirill E. Medvedev, Lisa N. Kinch, R. Dustin Schaeffer, Jimin Pei, Nick V. Grishin

    Izdano 2020
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  8. 8
    Classification of domains in predicted structures of the human proteome

    Classification of domains in predicted structures of the human proteome od R. Dustin Schaeffer, Jing Zhang, Lisa N. Kinch, Jimin Pei, Qian Cong, Nick V. Grishin

    Izdano 2023
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  9. 9
    ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

    ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2 od R. Dustin Schaeffer, Jing Zhang, Kirill E. Medvedev, Lisa N. Kinch, Qian Cong, Nick V. Grishin

    Izdano 2024
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  10. 10
    CASP16 protein monomer structure prediction assessment

    CASP16 protein monomer structure prediction assessment od Rongqing Yuan, Jing Zhang, Andriy Kryshtafovych, R. Dustin Schaeffer, Jian Zhou, Qian Cong, Nick V. Grishin

    Izdano 2025
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  11. 11
    ECOD: An Evolutionary Classification of Protein Domains

    ECOD: An Evolutionary Classification of Protein Domains od Hua Cheng, R. Dustin Schaeffer, Yuxing Liao, Lisa N. Kinch, Jimin Pei, Shuoyong Shi, Bong-Hyun Kim, Nick V. Grishin

    Izdano 2014
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  12. 12
    ECOD: integrating classifications of protein domains from experimental and predicted structures

    ECOD: integrating classifications of protein domains from experimental and predicted structures od R. Dustin Schaeffer, Kirill E. Medvedev, Antonina Andreeva, Sara Chuguransky, Beatriz Lázaro, Jing Zhang, Qian Cong, Alex Bateman, Nick V. Grishin

    Izdano 2024
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  13. 13
    Assessment of Protein Complex Predictions in CASP16: Are we making progress?

    Assessment of Protein Complex Predictions in CASP16: Are we making progress? od Jing Zhang, Rongqing Yuan, Andriy Kryshtafovych, Rachael C. Kretsch, R. Dustin Schaeffer, Jian Zhou, Rhiju Das, Nick V. Grishin, Qian Cong

    Izdano 2025
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  14. 14
    Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations

    Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations od David A. C. Beck, Amanda L. Jonsson, R. Dustin Schaeffer, Kathryn A. Scott, Ryan Day, Rudesh D. Toofanny, Darwin O. V. Alonso, Valerie Daggett

    Izdano 2008
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  15. 15
    Dynameomics: A Comprehensive Database of Protein Dynamics

    Dynameomics: A Comprehensive Database of Protein Dynamics od Marc W. van der Kamp, R. Dustin Schaeffer, Amanda L. Jonsson, Alexander D. Scouras, Andrew M. Simms, Rudesh D. Toofanny, Noah C. Benson, Peter C. Anderson, Eric Merkley, Steven J. Rysavy, Dennis Bromley, David A. C. Beck, Valerie Daggett

    Izdano 2010
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  16. 16
    The Pfam protein families database: embracing AI/ML

    The Pfam protein families database: embracing AI/ML od Typhaine Paysan-Lafosse, Antonina Andreeva, Matthias Blum, Sara Chuguransky, Tiago Grego, Beatriz Lázaro, Gustavo A Salazar, Maxwell L. Bileschi, Felipe Llinares-López, Laetitia Meng-Papaxanthos, Lucy J. Colwell, Nick V. Grishin, R. Dustin Schaeffer, Damiano Clementel, Silvio C. E. Tosatto, Erik L. L. Sonnhammer, Valerie Wood, Alex Bateman

    Izdano 2024
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  17. 17
    Accurate prediction of protein structures and interactions using a 3-track network

    Accurate prediction of protein structures and interactions using a 3-track network od Minkyung Baek, Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee, Jue Wang, Qian Cong, Lisa N. Kinch, R. Dustin Schaeffer, Claudia Millán, Hahnbeom Park, Carson Adams, Caleb R. Glassman, Andy DeGiovanni, J.H. Pereira, Andria V. Rodrigues, Alberdina A. van Dijk, Ana C. Ebrecht, Diederik J. Opperman, Theo Sagmeister, Christoph Buhlheller, Tea Pavkov‐Keller, Manoj Kumar Rathinaswamy, Udit Dalwadi, Calvin K. Yip, John E. Burke, K. Christopher García, Nick V. Grishin, Paul D. Adams, Randy J. Read, David Baker

    Izdano 2021
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  18. 18
    Accurate prediction of protein structures and interactions using a three-track neural network

    Accurate prediction of protein structures and interactions using a three-track neural network od Minkyung Baek, Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee, Jue Wang, Qian Cong, Lisa N. Kinch, R. Dustin Schaeffer, Claudia Millán, Hahnbeom Park, Carson Adams, Caleb R. Glassman, Andy DeGiovanni, J.H. Pereira, Andria V. Rodrigues, Alberdina A. van Dijk, Ana C. Ebrecht, Diederik J. Opperman, Theo Sagmeister, Christoph Buhlheller, Tea Pavkov‐Keller, Manoj Kumar Rathinaswamy, Udit Dalwadi, Calvin K. Yip, John E. Burke, K. Christopher García, Nick V. Grishin, Paul D. Adams, Randy J. Read, David Baker

    Izdano 2021
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