Výsledky vyhledávání - Peyton Greenside

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  1. 1
    Reverse-complement parameter sharing improves deep learning models for genomics

    Reverse-complement parameter sharing improves deep learning models for genomics Autor Avanti Shrikumar, Peyton Greenside, Anshul Kundaje

    Vydáno 2017
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  2. 2
    Discovering epistatic feature interactions from neural network models of regulatory DNA sequences

    Discovering epistatic feature interactions from neural network models of regulatory DNA sequences Autor Peyton Greenside, Tyler C. Shimko, Polly M. Fordyce, Anshul Kundaje

    Vydáno 2018
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  3. 3
    Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays

    Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays Autor Rajiv Movva, Peyton Greenside, Georgi K. Marinov, Surag Nair, Avanti Shrikumar, Anshul Kundaje

    Vydáno 2019
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  4. 4
    Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map

    Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map Autor Ian C. P. Smith, Peyton Greenside, Ted Natoli, David L. Lahr, David Wadden, Itay Tirosh, Rajiv Narayan, David E. Root, Todd R. Golub, Aravind Subramanian, John G. Doench

    Vydáno 2017
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  5. 5
    An Arntl2-Driven Secretome Enables Lung Adenocarcinoma Metastatic Self-Sufficiency

    An Arntl2-Driven Secretome Enables Lung Adenocarcinoma Metastatic Self-Sufficiency Autor Jennifer J. Brady, Chen-Hua Chuang, Peyton Greenside, Zoe Rogers, Christopher W. Murray, Deborah R. Caswell, Ursula Hartmann, Andrew J. Connolly, E. Alejandro Sweet‐Cordero, Anshul Kundaje, Monte M. Winslow

    Vydáno 2016
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  6. 6
    Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

    Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution Autor M. Ryan Corces, Jason D. Buenrostro, Beijing Wu, Peyton Greenside, Steven M. Chan, Julie L. Koenig, M Snyder, Jonathan K. Pritchard, Anshul Kundaje, William J. Greenleaf, Ravindra Majeti, Howard Y. Chang

    Vydáno 2016
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  7. 7
    Impact of regulatory variation across human iPSCs and differentiated cells

    Impact of regulatory variation across human iPSCs and differentiated cells Autor Nicholas E. Banovich, Yang Li, Anil Raj, Michelle C. Ward, Peyton Greenside, Diego Calderon, Po Yuan Tung, Jonathan E. Burnett, Marsha Myrthil, Samantha M. Thomas, Courtney K. Burrows, Irene Gallego Romero, Bryan J. Pavlovic, Anshul Kundaje, Jonathan K. Pritchard, Yoav Gilad

    Vydáno 2017
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  8. 8
    Landscape of cohesin-mediated chromatin loops in the human genome

    Landscape of cohesin-mediated chromatin loops in the human genome Autor Fabian Grubert, Rohith Srivas, Damek V. Spacek, Maya Kasowski, Mariana Ruiz-Velasco, Nasa Sinnott-Armstrong, Peyton Greenside, Anil Narasimha, Qing Liu, Benjamin S. Geller, Akshay Sanghi, Michael Kulik, Silin Sa, Marlene Rabinovitch, Anshul Kundaje, Stephen Dalton, Judith B. Zaugg, M Snyder

    Vydáno 2020
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  9. 9
    Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

    Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions Autor Fabian Grubert, Judith B. Zaugg, Maya Kasowski, Oana Ursu, Damek V. Spacek, Alicia R. Martin, Peyton Greenside, Rohith Srivas, Doug Phanstiel, Aleksandra Pękowska, Nastaran Heidari, Ghia Euskirchen, Wolfgang Huber, Jonathan K. Pritchard, Carlos D. Bustamante, Lars M. Steinmetz, Anshul Kundaje, M Snyder

    Vydáno 2015
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  10. 10
    Molecular definition of a metastatic lung cancer state reveals a targetable CD109–Janus kinase–Stat axis

    Molecular definition of a metastatic lung cancer state reveals a targetable CD109–Janus kinase–Stat axis Autor Chen-Hua Chuang, Peyton Greenside, Zoe Rogers, Jennifer J. Brady, Dian Yang, K. Rosanna, Deborah R. Caswell, Shin-Heng Chiou, Aidan Winters, Barbara M. Grüner, Gokul Ramaswami, Andrew Spencley, Kimberly Kopecky, Leanne C. Sayles, E. Alejandro Sweet‐Cordero, Jin Billy Li, Anshul Kundaje, Monte M. Winslow

    Vydáno 2017
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  11. 11
    Intertumoral Heterogeneity in SCLC Is Influenced by the Cell Type of Origin

    Intertumoral Heterogeneity in SCLC Is Influenced by the Cell Type of Origin Autor Dian Yang, Sarah K. Denny, Peyton Greenside, Andrea C. Chaikovsky, Jennifer J. Brady, Youcef Ouadah, Jeffrey M. Granja, Nadine S. Jahchan, Jing Lim, Shirley Kwok, Christina S. Kong, Anna S. Berghoff, Anna Schmitt, Hans Christian Reinhardt, Kwon-Sik Park, Matthias Preusser, Anshul Kundaje, William J. Greenleaf, Julien Sage, Monte M. Winslow

    Vydáno 2018
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  12. 12
    Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements

    Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements Autor Josh Tycko, Michael Wainberg, Georgi K. Marinov, Oana Ursu, Gaelen T. Hess, Braeden K. Ego, Aradhana, Amy Li, Alisa Truong, Alexandro E. Trevino, Kaitlyn Spees, David Yao, Irene M. Kaplow, Peyton Greenside, David W. Morgens, Douglas H. Phanstiel, M Snyder, Lacramioara Bintu, William J. Greenleaf, Anshul Kundaje, Michael C. Bassik

    Vydáno 2019
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  13. 13
    An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

    An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues Autor M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton Greenside, Nicholas A. Sinnott‐Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa S. Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang

    Vydáno 2017
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  14. 14
    Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements

    Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements Autor Maxwell R. Mumbach, Ansuman T. Satpathy, Evan A. Boyle, Chao Dai, Benjamin G. Gowen, Seung Woo Cho, Michelle Nguyen, Adam J. Rubin, Jeffrey M. Granja, Katelynn R. Kazane, Yuning Wei, Trieu Nguyen, Peyton Greenside, M. Ryan Corces, Josh Tycko, Dimitre R. Simeonov, Nabeela Suliman, Rui Li, Jin Xu, Ryan A. Flynn, Anshul Kundaje, Paul A. Khavari, Alexander Marson, Jacob E. Corn, Thomas Quertermous, William J. Greenleaf, Howard Y. Chang

    Vydáno 2017
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  15. 15
    A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles

    A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles Autor Aravind Subramanian, Rajiv Narayan, Steven M. Corsello, D. D. Peck, Ted Natoli, Xiaodong Lü, Joshua Gould, John F. Davis, Andrew A. Tubelli, Jacob K. Asiedu, David L. Lahr, Jodi Hirschman, Zihan Liu, Melanie Donahue, Bina Julian, Mariya Khan, David Wadden, Ian C. P. Smith, Daniel D. Lam, Arthur Liberzon, Courtney Toder, Mukta Bagul, Marek Orzechowski, Oana M. Enache, Federica Piccioni, Sarah Johnson, Nicholas Lyons, Alice H. Berger, Alykhan F. Shamji, Angela N. Brooks, Anita Vrcic, Corey Flynn, Jacqueline Rosains, David Y. Takeda, Roger Hu, Desiree Davison, Justin Lamb, Kristin Ardlie, Larson Hogstrom, Peyton Greenside, Nathanael S. Gray, Paul A. Clemons, Serena J. Silver, Xiaoyun Wu, Wen‐Ning Zhao, Willis Read-Button, Xiaohua Wu, Stephen J. Haggarty, Lucienne Ronco, Jesse S. Boehm, Stuart L. Schreiber, John G. Doench, Joshua A. Bittker, David E. Root, Bang Wong, Todd R. Golub

    Vydáno 2017
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  16. 16
    Discovery of common and rare genetic risk variants for colorectal cancer

    Discovery of common and rare genetic risk variants for colorectal cancer Autor Jeroen R. Huyghe, Stephanie A. Bien, Tabitha A. Harrison, Hyun Min Kang, Sai Chen, Stephanie L. Schmit, David V. Conti, Conghui Qu, Jihyoun Jeon, Christopher K. Edlund, Peyton Greenside, Michael Wainberg, Fredrick R. Schumacher, Joshua D. Smith, David Levine, Sarah C. Nelson, Nasa Sinnott-Armstrong, Demetrius Albanes, M. Henar Alonso, Kristin E. Anderson, Coral Arnau‐Collell, Volker Arndt, Christina Bamia, Barbara L. Banbury, John A. Baron, Sonja I. Berndt, Stéphane Bézieau, D. Timothy Bishop, Juergen Boehm, Heiner Boeing, Hermann Brenner, Stefanie Brezina, Stephan Buch, Daniel D. Buchanan, Andrea N. Burnett‐Hartman, Katja Butterbach, Bette J. Caan, Peter T. Campbell, Christopher S. Carlson, Sergi Castellvı́-Bel, Andrew T. Chan, Jenny Chang-Claude, Stephen J. Chanock, María‐Dolores Chirlaque, Sang‐Hee Cho, Charles M. Connolly, Amanda J. Cross, Katarina Ćuk, Keith R. Curtis, Albert de la Chapelle, Kimberly F. Doheny, David Duggan, Douglas F. Easton, Sjoerd G. Elias, Faye Elliott, Dallas R. English, Edith J. M. Feskens, Jane C. Figueiredo, Rocky Fischer, Liesel M. FitzGerald, David Forman, Manish Gala, Steven Gallinger, W. James Gauderman, Graham G. Giles, Elizabeth M. Gillanders, Jian Gong, Phyllis J. Goodman, William M. Grady, John Grove, Andrea Gsur, Marc J. Gunter, Robert W. Haile, Jochen Hampe, Heather Hampel, Sophia Harlid, Richard B. Hayes, Philipp Hofer, Michael Hoffmeister, John L. Hopper, Wan‐Ling Hsu, Wen‐Yi Huang, Thomas J. Hudson, David J. Hunter, Gemma Ibáñez‐Sanz, Gregory Idos, Roxann Ingersoll, Rebecca D. Jackson, Eric J. Jacobs, Mark A. Jenkins, Amit D. Joshi, Corinne E. Joshu, Temitope O. Keku, Timothy J. Key, Hyeong Rok Kim, Emiko Kobayashi, Laurence N. Kolonel, Charles Kooperberg, Tilman Kühn, Sébastien Küry

    Vydáno 2018
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