Search Results - Peter V. Kharchenko

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  1. 1
    Bayesian approach to single-cell differential expression analysis

    Bayesian approach to single-cell differential expression analysis by Peter V. Kharchenko, Lev Silberstein, David T. Scadden

    Published 2014
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  2. 2
    Influence of metabolic network structure and function on enzyme evolution.

    Influence of metabolic network structure and function on enzyme evolution. by Dennis Vitkup, Peter V. Kharchenko, Andreas Wagner

    Published 2006
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  3. 3
    Expression dynamics of a cellular metabolic network

    Expression dynamics of a cellular metabolic network by Peter V. Kharchenko, George M. Church, Dennis Vitkup

    Published 2005
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  4. 4
    Design and analysis of ChIP-seq experiments for DNA-binding proteins

    Design and analysis of ChIP-seq experiments for DNA-binding proteins by Peter V. Kharchenko, Michael Tolstorukov, Peter J. Park

    Published 2008
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  5. 5
    scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data

    scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data by Louis Faure, Ruslan Soldatov, Peter V. Kharchenko, Igor Adameyko

    Published 2022
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  6. 6
    RNA velocity—current challenges and future perspectives

    RNA velocity—current challenges and future perspectives by Volker Bergen, Ruslan Soldatov, Peter V. Kharchenko, Fabian J. Theis

    Published 2021
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  7. 7
    Chromosomal periodicity of evolutionarily conserved gene pairs

    Chromosomal periodicity of evolutionarily conserved gene pairs by Matthew A. Wright, Peter V. Kharchenko, George M. Church, Daniel Segrè

    Published 2007
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  8. 8
    Estimating enrichment of repetitive elements from high-throughput sequence data

    Estimating enrichment of repetitive elements from high-throughput sequence data by Daniel S. Day, Lovelace J. Luquette, Peter J. Park, Peter V. Kharchenko

    Published 2010
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  9. 9
    Identifying metabolic enzymes with multiple types of association evidence

    Identifying metabolic enzymes with multiple types of association evidence by Peter V. Kharchenko, Haiyong Chen, Yoav Freund, Dennis Vitkup, George M. Church

    Published 2006
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  10. 10
    Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification

    Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification by Artyom A. Alekseyenko, Andrey A. Gorchakov, Peter V. Kharchenko, Mitzi I. Kuroda

    Published 2014
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  11. 11
    Impact of Segmentation Errors in Analysis of Spatial Transcriptomics Data.

    Impact of Segmentation Errors in Analysis of Spatial Transcriptomics Data. by J.A. Mitchel, Teng Gao, Elijah Cole, Viktor Petukhov, Peter V. Kharchenko

    Published 2025
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  12. 12
    Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

    Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes by Michael Tolstorukov, Peter V. Kharchenko, Joseph Goldman, Robert E. Kingston, Peter J. Park

    Published 2009
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  13. 13
    Gene panel selection for targeted spatial transcriptomics

    Gene panel selection for targeted spatial transcriptomics by Yida Zhang, Viktor Petukhov, Evan Biederstedt, Richard Que, Kun Zhang, Peter V. Kharchenko

    Published 2024
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  14. 14
    A Region of the Human HOXD Cluster that Confers Polycomb-Group Responsiveness

    A Region of the Human HOXD Cluster that Confers Polycomb-Group Responsiveness by Caroline J. Woo, Peter V. Kharchenko, Laurence Dahéron, Peter J. Park, Robert E. Kingston

    Published 2010
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  15. 15
    Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data

    Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data by Mark S. Keller, Ilan Gold, Chuck McCallum, Trevor Manz, Peter V. Kharchenko, Nils Gehlenborg

    Published 2021
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  16. 16
    Vitessce: integrative visualization of multimodal and spatially resolved single-cell data

    Vitessce: integrative visualization of multimodal and spatially resolved single-cell data by Mark S. Keller, Ilan Gold, Chuck McCallum, Trevor Manz, Peter V. Kharchenko, Nils Gehlenborg

    Published 2024
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  17. 17
    dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments

    dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments by Viktor Petukhov, Jimin Guo, Ninib Baryawno, Nicolas Sévère, David T. Scadden, Maria Samsonova, Peter V. Kharchenko

    Published 2018
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  18. 18
    Joint analysis of heterogeneous single-cell RNA-seq dataset collections

    Joint analysis of heterogeneous single-cell RNA-seq dataset collections by Nikolaos Barkas, Viktor Petukhov, Daria Nikolaeva, Yaroslav Lozinsky, Samuel Demharter, Konstantin Khodosevich, Peter V. Kharchenko

    Published 2019
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  19. 19
    Case-control analysis of single-cell RNA-seq studies

    Case-control analysis of single-cell RNA-seq studies by Viktor Petukhov, Anna A. Igolkina, Rasmus Rydbirk, Shenglin Mei, Lars Christoffersen, Konstantin Khodosevich, Peter V. Kharchenko

    Published 2022
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  20. 20
    Heterochromatin-associated interactions of <i>Drosophila</i> HP1a with dADD1, HIPP1, and repetitive RNAs

    Heterochromatin-associated interactions of <i>Drosophila</i> HP1a with dADD1, HIPP1, and repetitive RNAs by Artyom A. Alekseyenko, Andrey A. Gorchakov, Barry M. Zee, Stephen M. Fuchs, Peter V. Kharchenko, Mitzi I. Kuroda

    Published 2014
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