Ohcanbohtosat - Patrignani, Andrea

Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays Dahkki Müller, Marlen, Patrignani, Andrea, Rehrauer, Hubert, Gruissem, Wilhelm, Hennig, Lars

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Ectopic Methylation of a Single Persistently Unmethylated CpG in the Promoter of the Vitellogenin Gene Abolishes Its Inducibility by Estrogen through Attenuation of Upstream Stimul... Dahkki Kallenberger, Lia, Erb, Rachel, Kralickova, Lucie, Patrignani, Andrea, Stöckli, Esther, Jiricny, Josef

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Malignant Catarrhal Fever of Cattle Is Associated with Low Abundance of IL-2 Transcript and a Predominantly Latent Profile of Ovine Herpesvirus 2 Gene Expression Dahkki Meier-Trummer, Claudia S., Rehrauer, Hubert, Franchini, Marco, Patrignani, Andrea, Wagner, Ulrich, Ackermann, Mathias

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A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes Dahkki Soneson, Charlotte, Yao, Yao, Bratus-Neuenschwander, Anna, Patrignani, Andrea, Robinson, Mark D., Hussain, Shobbir

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Highly sensitive, non-invasive detection of colorectal cancer mutations using single molecule, third generation sequencing Dahkki Russo, Giancarlo, Patrignani, Andrea, Poveda, Lucy, Hoehn, Frederic, Scholtka, Bettina, Schlapbach, Ralph, Garvin, Alex M.

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New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies Dahkki Qi, Weihong, Colarusso, Andrea, Olombrada, Miriam, Parrilli, Ermenegilda, Patrignani, Andrea, Tutino, Maria Luisa, Toll-Riera, Macarena

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KDM2B Is Implicated in Bovine Lethal Multi-Organic Developmental Dysplasia Dahkki Testoni, Stefania, Bartolone, Elena, Rossi, Marco, Patrignani, Andrea, Bruggmann, Rémy, Lichtner, Peter, Tetens, Jens, Gentile, Arcangelo, Drögemüller, Cord

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Cell Cycle Constraints and Environmental Control of Local DNA Hypomethylation in α-Proteobacteria Dahkki Ardissone, Silvia, Redder, Peter, Russo, Giancarlo, Frandi, Antonio, Fumeaux, Coralie, Patrignani, Andrea, Schlapbach, Ralph, Falquet, Laurent, Viollier, Patrick H.

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Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats Dahkki Schmid, Michael, Frei, Daniel, Patrignani, Andrea, Schlapbach, Ralph, Frey, Jürg E, Remus-Emsermann, Mitja N P, Ahrens, Christian H

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Mutation in the C-Di-AMP Cyclase dacA Affects Fitness and Resistance of Methicillin Resistant Staphylococcus aureus Dahkki Dengler, Vanina, McCallum, Nadine, Kiefer, Patrick, Christen, Philipp, Patrignani, Andrea, Vorholt, Julia A., Berger-Bächi, Brigitte, Senn, Maria M.

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A new full-length circular DNA sequencing method for viral-sized genomes reveals that RNAi transgenic plants provoke a shift in geminivirus populations in the field Dahkki Mehta, Devang, Hirsch-Hoffmann, Matthias, Were, Mariam, Patrignani, Andrea, Zaidi, Syed Shan-e-Ali, Were, Hassan, Gruissem, Wilhelm, Vanderschuren, Hervé

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New insights into the performance of human whole-exome capture platforms Dahkki Meienberg, Janine, Zerjavic, Katja, Keller, Irene, Okoniewski, Michal, Patrignani, Andrea, Ludin, Katja, Xu, Zhenyu, Steinmann, Beat, Carrel, Thierry, Röthlisberger, Benno, Schlapbach, Ralph, Bruggmann, Rémy, Matyas, Gabor

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Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars Dahkki Kuon, Joel-E., Qi, Weihong, Schläpfer, Pascal, Hirsch-Hoffmann, Matthias, von Bieberstein, Philipp Rogalla, Patrignani, Andrea, Poveda, Lucy, Grob, Stefan, Keller, Miyako, Shimizu-Inatsugi, Rie, Grossniklaus, Ueli, Vanderschuren, Hervé, Gruissem, Wilhelm

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The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features Dahkki Qi, Weihong, Lim, Yi-Wen, Patrignani, Andrea, Schläpfer, Pascal, Bratus-Neuenschwander, Anna, Grüter, Simon, Chanez, Christelle, Rodde, Nathalie, Prat, Elisa, Vautrin, Sonia, Fustier, Margaux-Alison, Pratas, Diogo, Schlapbach, Ralph, Gruissem, Wilhelm

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An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics Dahkki Omasits, Ulrich, Varadarajan, Adithi R., Schmid, Michael, Goetze, Sandra, Melidis, Damianos, Bourqui, Marc, Nikolayeva, Olga, Québatte, Maxime, Patrignani, Andrea, Dehio, Christoph, Frey, Juerg E., Robinson, Mark D., Wollscheid, Bernd, Ahrens, Christian H.

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AGRONOMICS1: A New Resource for Arabidopsis Transcriptome Profiling Dahkki Rehrauer, Hubert, Aquino, Catharine, Gruissem, Wilhelm, Henz, Stefan R., Hilson, Pierre, Laubinger, Sascha, Naouar, Naira, Patrignani, Andrea, Rombauts, Stephane, Shu, Huan, Van de Peer, Yves, Vuylsteke, Marnik, Weigel, Detlef, Zeller, Georg, Hennig, Lars

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Hemizygous deletion of COL3A1, COL5A2, and MSTN causes a complex phenotype with aortic dissection: a lesson for and from true haploinsufficiency Dahkki Meienberg, Janine, Rohrbach, Marianne, Neuenschwander, Stefan, Spanaus, Katharina, Giunta, Cecilia, Alonso, Sira, Arnold, Eliane, Henggeler, Caroline, Regenass, Stephan, Patrignani, Andrea, Azzarello-Burri, Silvia, Steiner, Bernhard, Nygren, Anders OH, Carrel, Thierry, Steinmann, Beat, Mátyás, Gábor

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Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms Dahkki Greminger, Maja P, Stölting, Kai N, Nater, Alexander, Goossens, Benoit, Arora, Natasha, Bruggmann, Rémy, Patrignani, Andrea, Nussberger, Beatrice, Sharma, Reeta, Kraus, Robert H S, Ambu, Laurentius N, Singleton, Ian, Chikhi, Lounes, van Schaik, Carel P, Krützen, Michael

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Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations Dahkki Giallonardo, Francesca Di, Töpfer, Armin, Rey, Melanie, Prabhakaran, Sandhya, Duport, Yannick, Leemann, Christine, Schmutz, Stefan, Campbell, Nottania K., Joos, Beda, Lecca, Maria Rita, Patrignani, Andrea, Däumer, Martin, Beisel, Christian, Rusert, Peter, Trkola, Alexandra, Günthard, Huldrych F., Roth, Volker, Beerenwinkel, Niko, Metzner, Karin J.

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Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop Dahkki Hatakeyama, Masaomi, Aluri, Sirisha, Balachadran, Mathi Thumilan, Sivarajan, Sajeevan Radha, Patrignani, Andrea, Grüter, Simon, Poveda, Lucy, Shimizu-Inatsugi, Rie, Baeten, John, Francoijs, Kees-Jan, Nataraja, Karaba N, Reddy, Yellodu A Nanja, Phadnis, Shamprasad, Ravikumar, Ramapura L, Schlapbach, Ralph, Sreeman, Sheshshayee M, Shimizu, Kentaro K

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