Ngā hua rapu kaituhi

1

Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial) mā Adina Howe, Patrick Chain

I whakaputaina 2015

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Revisão

Tiaki ki tētahi rārangi

I tiakina i:
2

Rapid evaluation and quality control of next generation sequencing data with FaQCs mā Chien‐Chi Lo, Patrick Chain

I whakaputaina 2014

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
3

Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs mā Matthew Scholz, Chien‐Chi Lo, Patrick Chain

I whakaputaina 2014

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

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I tiakina i:
4

Advances and Challenges in Metatranscriptomic Analysis mā Migun Shakya, Chien‐Chi Lo, Patrick Chain

I whakaputaina 2019

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Revisão

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I tiakina i:
5

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures mā Tracey Freitas, Po‐E Li, Matthew Scholz, Patrick Chain

I whakaputaina 2015

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
6

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life mā Migun Shakya, Sanaa Ahmed, Karen W. Davenport, Mark Flynn, Chien‐Chi Lo, Patrick Chain

I whakaputaina 2020

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

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I tiakina i:
7

The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate mā Natalie Donaher, Goro Tanifuji, Naoko T. Onodera, Stephanie Malfatti, Patrick Chain, Yoshiaki Hara, John M. Archibald

I whakaputaina 2009

Whiwhi kuputuhi katoa
Artigo

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I tiakina i:
8

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing mā Gary Xie, Patrick Chain, Chien‐Chi Lo, Kuan-Liang Liu, Jason Gans, Justin Merritt, F. Qi

I whakaputaina 2010

Whiwhi kuputuhi katoa
Artigo

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I tiakina i:
9

Under-detection of endospore-forming Firmicutes in metagenomic data mā Sevasti Filippidou, Thomas Junier, Tina Wunderlin, Chien‐Chi Lo, Po-E Li, Patrick Chain, Pilar Junier

I whakaputaina 2015

Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
10

The Genome Sequence of Yersinia pestis Bacteriophage φA1122 Reveals an Intimate History with the Coliphage T3 and T7 Genomes mā Emilio García García, Jeffrey M. Elliott, Erlan Ramanculov, Patrick Chain, May C. Chu, Ian J. Molineux

I whakaputaina 2003

Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
11

MicroRNA in Pancreatic Cancer: From Biology to Therapeutic Potential mā Manmeet Rawat, Kavita Kadian, Yash Gupta, Anand Kumar, Patrick Chain, Olga Kovbasnjuk, Suneel Kumar, Gulshan Parasher

I whakaputaina 2019

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Revisão

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I tiakina i:
12

Identification of MglA-Regulated Genes Reveals Novel Virulence Factors in Francisella tularensis mā Anna Brotcke, David S. Weiss, Charles C. Kim, Patrick Chain, Stephanie Malfatti, Emilio García García, Denise M. Monack

I whakaputaina 2006

Whiwhi kuputuhi katoa
Artigo

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13

Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing mā Deborah R. Yoder-Himes, Patrick Chain, Yiwen Zhu, Omri Wurtzel, Edward M. Rubin, James M. Tiedje, Rotem Sorek

I whakaputaina 2009

Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
14

Draft Genome Sequence of Sorghum Grain Mold Fungus Epicoccum sorghinum , a Producer of Tenuazonic Acid mā Rodrigo Cardoso de Oliveira, Karen W. Davenport, Blake T. Hovde, Danilo R. Silva, Patrick Chain, Benedito Corrêa, Débora F. Rodrigues

I whakaputaina 2017

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
15

Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen mā Patrick Chain, Ping Hu, Stephanie Malfatti, Lyndsay Radnedge, Frank W. Larimer, Lisa M. Vergez, Patricia L. Worsham, May C. Chu, Gary L. Andersen

I whakaputaina 2006

Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
16

Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions mā Maximilian O. Press, Andrew Wiser, Zev Kronenberg, Kyle W. Langford, Migun Shakya, Chien‐Chi Lo, Kathryn A. Mueller, Shawn Sullivan, Patrick Chain, Ivan Liachko

I whakaputaina 2017

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Pré-impressão

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17

Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7 mā Kerry K. Cooper, Robert E. Mandrell, Jacqueline W. Louie, Jonas Korlach, Tyson A. Clark, Craig T. Parker, Steven Huynh, Patrick Chain, Sanaa Ahmed, Michelle Qiu Carter

I whakaputaina 2014

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
18

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform mā Po‐E Li, Chien‐Chi Lo, Joseph J. Anderson, Karen W. Davenport, Kimberly A. Bishop‐Lilly, Yan Xu, Sanaa Ahmed, Shihai Feng, Vishwesh Mokashi, Patrick Chain

I whakaputaina 2016

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

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I tiakina i:
19

Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution mā Gang Tao, Steven Ahrendt, Shingo Miyauchi, Xia Zhu, Hao Peng, Kurt LaButti, Alicia Clum, Richard D. Hayes, Patrick Chain, Igor V. Grigoriev, Gregory Bonito, Francis Martin

I whakaputaina 2025

Whiwhi kuputuhi katoa
Artigo

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I tiakina i:
20

Saliva microbiomes distinguish caries-active from healthy human populations mā Fang Yang, Xiaowei Zeng, Kang Ning, Kuan-Liang Liu, Chien‐Chi Lo, Wei Wang, Jie Chen, Dongmei Wang, Ranran Huang, Xingzhi Chang, Patrick Chain, Gary Xie, Junqi Ling, Jian Xu

I whakaputaina 2011

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:

Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial) mā Adina Howe, Patrick Chain

Rapid evaluation and quality control of next generation sequencing data with FaQCs mā Chien‐Chi Lo, Patrick Chain

Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs mā Matthew Scholz, Chien‐Chi Lo, Patrick Chain

Advances and Challenges in Metatranscriptomic Analysis mā Migun Shakya, Chien‐Chi Lo, Patrick Chain

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures mā Tracey Freitas, Po‐E Li, Matthew Scholz, Patrick Chain

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life mā Migun Shakya, Sanaa Ahmed, Karen W. Davenport, Mark Flynn, Chien‐Chi Lo, Patrick Chain

The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate mā Natalie Donaher, Goro Tanifuji, Naoko T. Onodera, Stephanie Malfatti, Patrick Chain, Yoshiaki Hara, John M. Archibald

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing mā Gary Xie, Patrick Chain, Chien‐Chi Lo, Kuan-Liang Liu, Jason Gans, Justin Merritt, F. Qi

Under-detection of endospore-forming Firmicutes in metagenomic data mā Sevasti Filippidou, Thomas Junier, Tina Wunderlin, Chien‐Chi Lo, Po-E Li, Patrick Chain, Pilar Junier

The Genome Sequence of <i>Yersinia pestis</i> Bacteriophage φA1122 Reveals an Intimate History with the Coliphage T3 and T7 Genomes mā Emilio García García, Jeffrey M. Elliott, Erlan Ramanculov, Patrick Chain, May C. Chu, Ian J. Molineux

MicroRNA in Pancreatic Cancer: From Biology to Therapeutic Potential mā Manmeet Rawat, Kavita Kadian, Yash Gupta, Anand Kumar, Patrick Chain, Olga Kovbasnjuk, Suneel Kumar, Gulshan Parasher

Identification of MglA-Regulated Genes Reveals Novel Virulence Factors in <i>Francisella tularensis</i> mā Anna Brotcke, David S. Weiss, Charles C. Kim, Patrick Chain, Stephanie Malfatti, Emilio García García, Denise M. Monack

Mapping the <i>Burkholderia cenocepacia</i> niche response via high-throughput sequencing mā Deborah R. Yoder-Himes, Patrick Chain, Yiwen Zhu, Omri Wurtzel, Edward M. Rubin, James M. Tiedje, Rotem Sorek

Draft Genome Sequence of Sorghum Grain Mold Fungus <i>Epicoccum sorghinum</i> , a Producer of Tenuazonic Acid mā Rodrigo Cardoso de Oliveira, Karen W. Davenport, Blake T. Hovde, Danilo R. Silva, Patrick Chain, Benedito Corrêa, Débora F. Rodrigues

Complete Genome Sequence of <i>Yersinia pestis</i> Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen mā Patrick Chain, Ping Hu, Stephanie Malfatti, Lyndsay Radnedge, Frank W. Larimer, Lisa M. Vergez, Patricia L. Worsham, May C. Chu, Gary L. Andersen

Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions mā Maximilian O. Press, Andrew Wiser, Zev Kronenberg, Kyle W. Langford, Migun Shakya, Chien‐Chi Lo, Kathryn A. Mueller, Shawn Sullivan, Patrick Chain, Ivan Liachko

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform mā Po‐E Li, Chien‐Chi Lo, Joseph J. Anderson, Karen W. Davenport, Kimberly A. Bishop‐Lilly, Yan Xu, Sanaa Ahmed, Shihai Feng, Vishwesh Mokashi, Patrick Chain

Saliva microbiomes distinguish caries-active from healthy human populations mā Fang Yang, Xiaowei Zeng, Kang Ning, Kuan-Liang Liu, Chien‐Chi Lo, Wei Wang, Jie Chen, Dongmei Wang, Ranran Huang, Xingzhi Chang, Patrick Chain, Gary Xie, Junqi Ling, Jian Xu

Ngā hua rapu - Patrick Chain

Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial) mā Adina Howe, Patrick Chain

Rapid evaluation and quality control of next generation sequencing data with FaQCs mā Chien‐Chi Lo, Patrick Chain

Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs mā Matthew Scholz, Chien‐Chi Lo, Patrick Chain

Advances and Challenges in Metatranscriptomic Analysis mā Migun Shakya, Chien‐Chi Lo, Patrick Chain

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures mā Tracey Freitas, Po‐E Li, Matthew Scholz, Patrick Chain

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life mā Migun Shakya, Sanaa Ahmed, Karen W. Davenport, Mark Flynn, Chien‐Chi Lo, Patrick Chain

The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate mā Natalie Donaher, Goro Tanifuji, Naoko T. Onodera, Stephanie Malfatti, Patrick Chain, Yoshiaki Hara, John M. Archibald

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing mā Gary Xie, Patrick Chain, Chien‐Chi Lo, Kuan-Liang Liu, Jason Gans, Justin Merritt, F. Qi

Under-detection of endospore-forming Firmicutes in metagenomic data mā Sevasti Filippidou, Thomas Junier, Tina Wunderlin, Chien‐Chi Lo, Po-E Li, Patrick Chain, Pilar Junier

The Genome Sequence of <i>Yersinia pestis</i> Bacteriophage φA1122 Reveals an Intimate History with the Coliphage T3 and T7 Genomes mā Emilio García García, Jeffrey M. Elliott, Erlan Ramanculov, Patrick Chain, May C. Chu, Ian J. Molineux

MicroRNA in Pancreatic Cancer: From Biology to Therapeutic Potential mā Manmeet Rawat, Kavita Kadian, Yash Gupta, Anand Kumar, Patrick Chain, Olga Kovbasnjuk, Suneel Kumar, Gulshan Parasher

Identification of MglA-Regulated Genes Reveals Novel Virulence Factors in <i>Francisella tularensis</i> mā Anna Brotcke, David S. Weiss, Charles C. Kim, Patrick Chain, Stephanie Malfatti, Emilio García García, Denise M. Monack

Mapping the <i>Burkholderia cenocepacia</i> niche response via high-throughput sequencing mā Deborah R. Yoder-Himes, Patrick Chain, Yiwen Zhu, Omri Wurtzel, Edward M. Rubin, James M. Tiedje, Rotem Sorek

Draft Genome Sequence of Sorghum Grain Mold Fungus <i>Epicoccum sorghinum</i> , a Producer of Tenuazonic Acid mā Rodrigo Cardoso de Oliveira, Karen W. Davenport, Blake T. Hovde, Danilo R. Silva, Patrick Chain, Benedito Corrêa, Débora F. Rodrigues

Complete Genome Sequence of <i>Yersinia pestis</i> Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen mā Patrick Chain, Ping Hu, Stephanie Malfatti, Lyndsay Radnedge, Frank W. Larimer, Lisa M. Vergez, Patricia L. Worsham, May C. Chu, Gary L. Andersen

Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions mā Maximilian O. Press, Andrew Wiser, Zev Kronenberg, Kyle W. Langford, Migun Shakya, Chien‐Chi Lo, Kathryn A. Mueller, Shawn Sullivan, Patrick Chain, Ivan Liachko

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform mā Po‐E Li, Chien‐Chi Lo, Joseph J. Anderson, Karen W. Davenport, Kimberly A. Bishop‐Lilly, Yan Xu, Sanaa Ahmed, Shihai Feng, Vishwesh Mokashi, Patrick Chain

Saliva microbiomes distinguish caries-active from healthy human populations mā Fang Yang, Xiaowei Zeng, Kang Ning, Kuan-Liang Liu, Chien‐Chi Lo, Wei Wang, Jie Chen, Dongmei Wang, Ranran Huang, Xingzhi Chang, Patrick Chain, Gary Xie, Junqi Ling, Jian Xu

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