Søgeresultater - Patrick Chain

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  1. 1
    Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)

    Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial) af Adina Howe, Patrick Chain

    Udgivet 2015
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  2. 2
    Rapid evaluation and quality control of next generation sequencing data with FaQCs

    Rapid evaluation and quality control of next generation sequencing data with FaQCs af Chien‐Chi Lo, Patrick Chain

    Udgivet 2014
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  3. 3
    Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs

    Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs af Matthew Scholz, Chien‐Chi Lo, Patrick Chain

    Udgivet 2014
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  4. 4
    Advances and Challenges in Metatranscriptomic Analysis

    Advances and Challenges in Metatranscriptomic Analysis af Migun Shakya, Chien‐Chi Lo, Patrick Chain

    Udgivet 2019
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  5. 5
    Accurate read-based metagenome characterization using a hierarchical suite of unique signatures

    Accurate read-based metagenome characterization using a hierarchical suite of unique signatures af Tracey Freitas, Po‐E Li, Matthew Scholz, Patrick Chain

    Udgivet 2015
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  6. 6
    Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life

    Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life af Migun Shakya, Sanaa Ahmed, Karen W. Davenport, Mark Flynn, Chien‐Chi Lo, Patrick Chain

    Udgivet 2020
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  7. 7
    The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate

    The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate af Natalie Donaher, Goro Tanifuji, Naoko T. Onodera, Stephanie Malfatti, Patrick Chain, Yoshiaki Hara, John M. Archibald

    Udgivet 2009
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  8. 8
    Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing

    Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing af Gary Xie, Patrick Chain, Chien‐Chi Lo, Kuan-Liang Liu, Jason Gans, Justin Merritt, F. Qi

    Udgivet 2010
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  9. 9
    Under-detection of endospore-forming Firmicutes in metagenomic data

    Under-detection of endospore-forming Firmicutes in metagenomic data af Sevasti Filippidou, Thomas Junier, Tina Wunderlin, Chien‐Chi Lo, Po-E Li, Patrick Chain, Pilar Junier

    Udgivet 2015
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  10. 10
    The Genome Sequence of <i>Yersinia pestis</i> Bacteriophage φA1122 Reveals an Intimate History with the Coliphage T3 and T7 Genomes

    The Genome Sequence of <i>Yersinia pestis</i> Bacteriophage φA1122 Reveals an Intimate History with the Coliphage T3 and T7 Genomes af Emilio García García, Jeffrey M. Elliott, Erlan Ramanculov, Patrick Chain, May C. Chu, Ian J. Molineux

    Udgivet 2003
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  11. 11
    MicroRNA in Pancreatic Cancer: From Biology to Therapeutic Potential

    MicroRNA in Pancreatic Cancer: From Biology to Therapeutic Potential af Manmeet Rawat, Kavita Kadian, Yash Gupta, Anand Kumar, Patrick Chain, Olga Kovbasnjuk, Suneel Kumar, Gulshan Parasher

    Udgivet 2019
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  12. 12
    Identification of MglA-Regulated Genes Reveals Novel Virulence Factors in <i>Francisella tularensis</i>

    Identification of MglA-Regulated Genes Reveals Novel Virulence Factors in <i>Francisella tularensis</i> af Anna Brotcke, David S. Weiss, Charles C. Kim, Patrick Chain, Stephanie Malfatti, Emilio García García, Denise M. Monack

    Udgivet 2006
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  13. 13
    Mapping the <i>Burkholderia cenocepacia</i> niche response via high-throughput sequencing

    Mapping the <i>Burkholderia cenocepacia</i> niche response via high-throughput sequencing af Deborah R. Yoder-Himes, Patrick Chain, Yiwen Zhu, Omri Wurtzel, Edward M. Rubin, James M. Tiedje, Rotem Sorek

    Udgivet 2009
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  14. 14
    Draft Genome Sequence of Sorghum Grain Mold Fungus <i>Epicoccum sorghinum</i> , a Producer of Tenuazonic Acid

    Draft Genome Sequence of Sorghum Grain Mold Fungus <i>Epicoccum sorghinum</i> , a Producer of Tenuazonic Acid af Rodrigo Cardoso de Oliveira, Karen W. Davenport, Blake T. Hovde, Danilo R. Silva, Patrick Chain, Benedito Corrêa, Débora F. Rodrigues

    Udgivet 2017
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  15. 15
    Complete Genome Sequence of <i>Yersinia pestis</i> Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen

    Complete Genome Sequence of <i>Yersinia pestis</i> Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen af Patrick Chain, Ping Hu, Stephanie Malfatti, Lyndsay Radnedge, Frank W. Larimer, Lisa M. Vergez, Patricia L. Worsham, May C. Chu, Gary L. Andersen

    Udgivet 2006
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  16. 16
    Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions

    Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions af Maximilian O. Press, Andrew Wiser, Zev Kronenberg, Kyle W. Langford, Migun Shakya, Chien‐Chi Lo, Kathryn A. Mueller, Shawn Sullivan, Patrick Chain, Ivan Liachko

    Udgivet 2017
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  17. 17
    Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7

    Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7 af Kerry K. Cooper, Robert E. Mandrell, Jacqueline W. Louie, Jonas Korlach, Tyson A. Clark, Craig T. Parker, Steven Huynh, Patrick Chain, Sanaa Ahmed, Michelle Qiu Carter

    Udgivet 2014
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  18. 18
    Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

    Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform af Po‐E Li, Chien‐Chi Lo, Joseph J. Anderson, Karen W. Davenport, Kimberly A. Bishop‐Lilly, Yan Xu, Sanaa Ahmed, Shihai Feng, Vishwesh Mokashi, Patrick Chain

    Udgivet 2016
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  19. 19
    Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution

    Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution af Gang Tao, Steven Ahrendt, Shingo Miyauchi, Xia Zhu, Hao Peng, Kurt LaButti, Alicia Clum, Richard D. Hayes, Patrick Chain, Igor V. Grigoriev, Gregory Bonito, Francis Martin

    Udgivet 2025
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  20. 20
    Saliva microbiomes distinguish caries-active from healthy human populations

    Saliva microbiomes distinguish caries-active from healthy human populations af Fang Yang, Xiaowei Zeng, Kang Ning, Kuan-Liang Liu, Chien‐Chi Lo, Wei Wang, Jie Chen, Dongmei Wang, Ranran Huang, Xingzhi Chang, Patrick Chain, Gary Xie, Junqi Ling, Jian Xu

    Udgivet 2011
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