Bilaketaren emaitzak - Orvis, Joshua

Transcript analysis of nrrF, a Fur repressed sRNA of Neisseria gonorrhoeae nork Ducey, Thomas F., Jackson, Lydgia, Orvis, Joshua, Dyer, David W.

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Identification of the Iron-Responsive Genes of Neisseria gonorrhoeae by Microarray Analysis in Defined Medium nork Ducey, Thomas F., Carson, Matthew B., Orvis, Joshua, Stintzi, Alain P., Dyer, David W.

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Transcriptional and Functional Analysis of the Neisseria gonorrhoeae Fur Regulon nork Jackson, Lydgia A., Ducey, Thomas F., Day, Michael W., Zaitshik, Jeremy B., Orvis, Joshua, Dyer, David W.

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The IGS Standard Operating Procedure for Automated Prokaryotic Annotation nork Galens, Kevin, Orvis, Joshua, Daugherty, Sean, Creasy, Heather H., Angiuoli, Sam, White, Owen, Wortman, Jennifer, Mahurkar, Anup, Giglio, Michelle Gwinn

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The genome sequence of four isolates from the family Lichtheimiaceae nork Chibucos, Marcus C., Etienne, Kizee A., Orvis, Joshua, Lee, Hongkyu, Daugherty, Sean, Lockhart, Shawn R., Ibrahim, Ashraf S., Bruno, Vincent M.

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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments nork Haas, Brian J, Salzberg, Steven L, Zhu, Wei, Pertea, Mihaela, Allen, Jonathan E, Orvis, Joshua, White, Owen, Buell, C Robin, Wortman, Jennifer R

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Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities nork Martin, John, Sykes, Sean, Young, Sarah, Kota, Karthik, Sanka, Ravi, Sheth, Nihar, Orvis, Joshua, Sodergren, Erica, Wang, Zhengyuan, Weinstock, George M., Mitreva, Makedonka

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Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842 nork Etienne, Kizee A., Chibucos, Marcus C., Su, Qi, Orvis, Joshua, Daugherty, Sean, Ott, Sandra, Sengamalay, Naomi A., Fraser, Claire M., Lockhart, Shawn R., Bruno, Vincent M.

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HMPDACC: a Human Microbiome Project Multi-omic data resource nork Creasy, Heather Huot, Felix, Victor, Aluvathingal, Jain, Crabtree, Jonathan, Ifeonu, Olukemi, Matsumura, James, McCracken, Carrie, Nickel, Lance, Orvis, Joshua, Schor, Mike, Giglio, Michelle, Mahurkar, Anup, White, Owen

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The TIGR Rice Genome Annotation Resource: improvements and new features nork Ouyang, Shu, Zhu, Wei, Hamilton, John, Lin, Haining, Campbell, Matthew, Childs, Kevin, Thibaud-Nissen, Françoise, Malek, Renae L., Lee, Yuandan, Zheng, Li, Orvis, Joshua, Haas, Brian, Wortman, Jennifer, Buell, C. Robin

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The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations nork Cerqueira, Gustavo C., Arnaud, Martha B., Inglis, Diane O., Skrzypek, Marek S., Binkley, Gail, Simison, Matt, Miyasato, Stuart R., Binkley, Jonathan, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Sherlock, Gavin, Wortman, Jennifer R.

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The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community nork Arnaud, Martha B., Chibucos, Marcus C., Costanzo, Maria C., Crabtree, Jonathan, Inglis, Diane O., Lotia, Adil, Orvis, Joshua, Shah, Prachi, Skrzypek, Marek S., Binkley, Gail, Miyasato, Stuart R., Wortman, Jennifer R., Sherlock, Gavin

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Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys nork Ioannidis, Panagiotis, Lu, Yong, Kumar, Nikhil, Creasy, Todd, Daugherty, Sean, Chibucos, Marcus C, Orvis, Joshua, Shetty, Amol, Ott, Sandra, Flowers, Melissa, Sengamalay, Naomi, Tallon, Luke J, Pick, Leslie, Hotopp, Julie C Dunning

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Ergatis: a web interface and scalable software system for bioinformatics workflows nork Orvis, Joshua, Crabtree, Jonathan, Galens, Kevin, Gussman, Aaron, Inman, Jason M., Lee, Eduardo, Nampally, Sreenath, Riley, David, Sundaram, Jaideep P., Felix, Victor, Whitty, Brett, Mahurkar, Anup, Wortman, Jennifer, White, Owen, Angiuoli, Samuel V.

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Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms nork Tretina, Kyle, Pelle, Roger, Orvis, Joshua, Gotia, Hanzel T., Ifeonu, Olukemi O., Kumari, Priti, Palmateer, Nicholas C., Iqbal, Shaikh B. A., Fry, Lindsay M., Nene, Vishvanath M., Daubenberger, Claudia A., Bishop, Richard P., Silva, Joana C.

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Characterization of the development of the mouse cochlear epithelium at the single cell level nork Kolla, Likhitha, Kelly, Michael C., Mann, Zoe F., Anaya-Rocha, Alejandro, Ellis, Kathryn, Lemons, Abigail, Palermo, Adam T., So, Kathy S., Mays, Joseph C., Orvis, Joshua, Burns, Joseph C., Hertzano, Ronna, Driver, Elizabeth C., Kelley, Matthew W.

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Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 an... nork Ifeonu, Olukemi O., Chibucos, Marcus C., Orvis, Joshua, Su, Qi, Elwin, Kristin, Guo, Fengguang, Zhang, Haili, Xiao, Lihua, Sun, Mingfei, Chalmers, Rachel M., Fraser, Claire M., Zhu, Guan, Kissinger, Jessica C., Widmer, Giovanni, Silva, Joana C.

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Strains, functions and dynamics in the expanded Human Microbiome Project nork Lloyd-Price, Jason, Mahurkar, Anup, Rahnavard, Gholamali, Crabtree, Jonathan, Orvis, Joshua, Hall, A. Brantley, Brady, Arthur, Creasy, Heather H., McCracken, Carrie, Giglio, Michelle G., McDonald, Daniel, Franzosa, Eric A., Knight, Rob, White, Owen, Huttenhower, Curtis

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Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project nork Lloyd-Price, Jason, Mahurkar, Anup, Rahnavard, Gholamali, Crabtree, Jonathan, Orvis, Joshua, Hall, A. Brantley, Brady, Arthur, Creasy, Heather H., McCracken, Carrie, Giglio, Michelle G., McDonald, Daniel, Franzosa, Eric A., Knight, Rob, White, Owen, Huttenhower, Curtis

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The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome of Aplysia nork Orvis, Joshua, Albertin, Caroline B., Shrestha, Pragya, Chen, Shuangshuang, Zheng, Melanie, Rodriguez, Cheyenne J., Tallon, Luke J., Mahurkar, Anup, Zimin, Aleksey V., Kim, Michelle, Liu, Kelvin, Kandel, Eric R., Fraser, Claire M., Sossin, Wayne, Abrams, Thomas W.

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