检索结果 - Olson, Nathan D

DNA extract characterization process for microbial detection methods development and validation 由 Olson, Nathan D, Morrow, Jayne B

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Challenging a bioinformatic tool’s ability to detect microbial contaminants using in silico whole genome sequencing data 由 Olson, Nathan D., Zook, Justin M., Morrow, Jayne B., Lin, Nancy J.

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Impact of Processing Method on Recovery of Bacteria from Wipes Used in Biological Surface Sampling 由 Downey, Autumn S., Da Silva, Sandra M., Olson, Nathan D., Filliben, James J., Morrow, Jayne B.

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PEPR: pipelines for evaluating prokaryotic references 由 Olson, Nathan D., Zook, Justin M., Samarov, Daniel V., Jackson, Scott A., Salit, Marc L.

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metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data 由 Olson, Nathan D, Shah, Nidhi, Kancherla, Jayaram, Wagner, Justin, Paulson, Joseph N, Corrada Bravo, Hector

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Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes 由 Olson, Nathan D, Treangen, Todd J, Hill, Christopher M, Cepeda-Espinoza, Victoria, Ghurye, Jay, Koren, Sergey, Pop, Mihai

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Antibiotic Concentrations Decrease during Wastewater Treatment but Persist at Low Levels in Reclaimed Water 由 Kulkarni, Prachi, Olson, Nathan D., Raspanti, Greg A., Rosenberg Goldstein, Rachel E., Gibbs, Shawn G., Sapkota, Amir, Sapkota, Amy R.

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Performing skin microbiome research: A method to the madness 由 Kong, Heidi H., Andersson, Björn, Clavel, Thomas, Common, John E., Jackson, Scott A., Olson, Nathan D., Segre, Julia A., Traidl-Hoffmann, Claudia

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The genotype‐phenotype landscape of an allosteric protein 由 Tack, Drew S, Tonner, Peter D, Pressman, Abe, Olson, Nathan D, Levy, Sasha F, Romantseva, Eugenia F, Alperovich, Nina, Vasilyeva, Olga, Ross, David

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The genotype‐phenotype landscape of an allosteric protein 由 Tack, Drew S, Tonner, Peter D, Pressman, Abe, Olson, Nathan D, Levy, Sasha F, Romantseva, Eugenia F, Alperovich, Nina, Vasilyeva, Olga, Ross, David

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A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures. 由 Olson, Nathan D., Kumar, M. Senthil, Li, Shan, Braccia, Domenick J., Hao, Stephanie, Timp, Winston, Salit, Marc L., Stine, O. Colin, Bravo, Hector Corrada

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Assembly and annotation of an Ashkenazi human reference genome 由 Shumate, Alaina, Zimin, Aleksey V., Sherman, Rachel M., Puiu, Daniela, Wagner, Justin M., Olson, Nathan D., Pertea, Mihaela, Salit, Marc L., Zook, Justin M., Salzberg, Steven L.

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Best practices for evaluating single nucleotide variant calling methods for microbial genomics 由 Olson, Nathan D., Lund, Steven P., Colman, Rebecca E., Foster, Jeffrey T., Sahl, Jason W., Schupp, James M., Keim, Paul, Morrow, Jayne B., Salit, Marc L., Zook, Justin M.

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High-coverage, long-read sequencing of Han Chinese trio reference samples 由 Wang, Ying-Chih, Olson, Nathan D., Deikus, Gintaras, Shah, Hardik, Wenger, Aaron M., Trow, Jonathan, Xiao, Chunlin, Sherry, Stephen, Salit, Marc L., Zook, Justin M., Smith, Melissa, Sebra, Robert

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Conventional wastewater treatment and reuse site practices modify bacterial community structure but do not eliminate some opportunistic pathogens in reclaimed water 由 Kulkarni, Prachi, Olson, Nathan D., Paulson, Joseph N., Pop, Mihai, Maddox, Cynthia, Claye, Emma, Goldstein, Rachel E. Rosenberg, Sharma, Manan, Gibbs, Shawn G., Mongodin, Emmanuel F., Sapkota, Amy R.

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International interlaboratory study comparing single organism 16S rRNA gene sequencing data: Beyond consensus sequence comparisons 由 Olson, Nathan D., Lund, Steven P., Zook, Justin M., Rojas-Cornejo, Fabiola, Beck, Brian, Foy, Carole, Huggett, Jim, Whale, Alexandra S., Sui, Zhiwei, Baoutina, Anna, Dobeson, Michael, Partis, Lina, Morrow, Jayne B.

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An open resource for accurately benchmarking small variant and reference calls 由 Zook, Justin M., McDaniel, Jennifer, Olson, Nathan D., Wagner, Justin, Parikh, Hemang, Heaton, Haynes, Irvine, Sean A., Trigg, Len, Truty, Rebecca, McLean, Cory Y., De La Vega, Francisco M., Xiao, Chunlin, Sherry, Stephen, Salit, Marc

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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome 由 Wenger, Aaron M., Peluso, Paul, Rowell, William J., Chang, Pi-Chuan, Hall, Richard J., Concepcion, Gregory T., Ebler, Jana, Fungtammasan, Arkarachai, Kolesnikov, Alexey, Olson, Nathan D., Töpfer, Armin, Alonge, Michael, Mahmoud, Medhat, Qian, Yufeng, Chin, Chen-Shan, Phillippy, Adam M., Schatz, Michael C., Myers, Gene, DePristo, Mark A., Ruan, Jue, Marschall, Tobias, Sedlazeck, Fritz J., Zook, Justin M., Li, Heng, Koren, Sergey, Carroll, Andrew, Rank, David R., Hunkapiller, Michael W.

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A complete reference genome improves analysis of human genetic variation 由 Aganezov, Sergey, Yan, Stephanie M., Soto, Daniela C., Kirsche, Melanie, Zarate, Samantha, Avdeyev, Pavel, Taylor, Dylan J., Shafin, Kishwar, Shumate, Alaina, Xiao, Chunlin, Wagner, Justin, McDaniel, Jennifer, Olson, Nathan D., Sauria, Michael E. G., Vollger, Mitchell R., Rhie, Arang, Meredith, Melissa, Martin, Skylar, Lee, Joyce, Koren, Sergey, Rosenfeld, Jeffrey A., Paten, Benedict, Layer, Ryan, Chin, Chen-Shan, Sedlazeck, Fritz J., Hansen, Nancy F., Miller, Danny E., Phillippy, Adam M., Miga, Karen H., McCoy, Rajiv C., Dennis, Megan Y., Zook, Justin M., Schatz, Michael C.

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Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College P... 由 Meisel, Jacquelyn S., Nasko, Daniel J., Brubach, Brian, Cepeda-Espinoza, Victoria, Chopyk, Jessica, Corrada-Bravo, Héctor, Fedarko, Marcus, Ghurye, Jay, Javkar, Kiran, Olson, Nathan D., Shah, Nidhi, Allard, Sarah M., Bazinet, Adam L., Bergman, Nicholas H., Brown, Alexis, Caporaso, J. Gregory, Conlan, Sean, DiRuggiero, Jocelyne, Forry, Samuel P., Hasan, Nur A., Kralj, Jason, Luethy, Paul M., Milton, Donald K., Ondov, Brian D., Preheim, Sarah, Ratnayake, Shashikala, Rogers, Stephanie M., Rosovitz, M. J., Sakowski, Eric G., Schliebs, Nils Oliver, Sommer, Daniel D., Ternus, Krista L., Uritskiy, Gherman, Zhang, Sean X., Pop, Mihai, Treangen, Todd J.

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