Kết quả tìm kiếm - Ollikainen, Noah

Computational Protein Design Quantifies Structural Constraints on Amino Acid Covariation Bằng Ollikainen, Noah, Kortemme, Tanja

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Structural analysis of the evolution of steroid specificity in the mineralocorticoid and glucocorticoid receptors Bằng Baker, Michael E, Chandsawangbhuwana, Charlie, Ollikainen, Noah

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Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity Bằng Ollikainen, Noah, de Jong, René M., Kortemme, Tanja

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Methods in Enzymology: “Flexible backbone sampling methods to model and design protein alternative conformations” Bằng Ollikainen, Noah, Smith, Colin A., Fraser, James S., Kortemme, Tanja

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Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition Bằng Melero, Cristina, Ollikainen, Noah, Harwood, Ian, Karpiak, Joel, Kortemme, Tanja

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Amino-acid site variability among natural and designed proteins Bằng Jackson, Eleisha L., Ollikainen, Noah, Covert, Arthur W., Kortemme, Tanja, Wilke, Claus O.

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Widespread Protein Aggregation as an Inherent Part of Aging in C. elegans Bằng David, Della C., Ollikainen, Noah, Trinidad, Jonathan C., Cary, Michael P., Burlingame, Alma L., Kenyon, Cynthia

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A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design Bằng Ó Conchúir, Shane, Barlow, Kyle A., Pache, Roland A., Ollikainen, Noah, Kundert, Kale, O'Meara, Matthew J., Smith, Colin A., Kortemme, Tanja

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Integrated spatial genomics reveals global architecture of single nuclei Bằng Takei, Yodai, Yun, Jina, Zheng, Shiwei, Ollikainen, Noah, Pierson, Nico, White, Jonathan, Shah, Sheel, Thomassie, Julian, Suo, Shengbao, Eng, Chee-Huat Linus, Guttman, Mitchell, Yuan, Guo-Cheng, Cai, Long

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RNA promotes the formation of spatial compartments in the nucleus Bằng Quinodoz, Sofia A., Jachowicz, Joanna W., Bhat, Prashant, Ollikainen, Noah, Banerjee, Abhik K., Goronzy, Isabel N., Blanco, Mario R., Chovanec, Peter, Chow, Amy, Markaki, Yolanda, Thai, Jasmine, Plath, Kathrin, Guttman, Mitchell

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Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes Bằng Gupta, Nitin, Benhamida, Jamal, Bhargava, Vipul, Goodman, Daniel, Kain, Elisabeth, Kerman, Ian, Nguyen, Ngan, Ollikainen, Noah, Rodriguez, Jesse, Wang, Jian, Lipton, Mary S., Romine, Margaret, Bafna, Vineet, Smith, Richard D., Pevzner, Pavel A.

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Systems-level effects of allosteric perturbations to a model molecular switch Bằng Perica, Tina, Mathy, Christopher J. P., Xu, Jiewei, Jang, Gwendolyn M., Zhang, Yang, Kaake, Robyn, Ollikainen, Noah, Braberg, Hannes, Swaney, Danielle L., Lambright, David G., Kelly, Mark J. S., Krogan, Nevan J., Kortemme, Tanja

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Computational design of a modular protein sense/response system Bằng Glasgow, Anum A., Huang, Yao-Ming, Mandell, Daniel J., Thompson, Michael, Ritterson, Ryan, Loshbaugh, Amanda L., Pellegrino, Jenna, Krivacic, Cody, Pache, Roland A., Barlow, Kyle A., Ollikainen, Noah, Jeon, Deborah, Kelly, Mark J. S., Fraser, James S., Kortemme, Tanja

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Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus Bằng Quinodoz, Sofia A., Ollikainen, Noah, Tabak, Barbara, Palla, Ali, Schmidt, Jan Marten, Detmar, Elizabeth, Lai, Mason M., Shishkin, Alexander A., Bhat, Prashant, Takei, Yodai, Trinh, Vickie, Aznauryan, Erik, Russell, Pamela, Cheng, Christine, Jovanovic, Marko, Chow, Amy, Cai, Long, McDonel, Patrick, Garber, Manuel, Guttman, Mitchell

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SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses Bằng Banerjee, Abhik K., Blanco, Mario R., Bruce, Emily A., Honson, Drew D., Chen, Linlin M., Chow, Amy, Bhat, Prashant, Ollikainen, Noah, Quinodoz, Sofia A., Loney, Colin, Thai, Jasmine, Miller, Zachary D., Lin, Aaron E., Schmidt, Madaline M., Stewart, Douglas G., Goldfarb, Daniel, De Lorenzo, Giuditta, Rihn, Suzannah J., Voorhees, Rebecca M., Botten, Jason W., Majumdar, Devdoot, Guttman, Mitchell

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Macromolecular modeling and design in Rosetta: recent methods and frameworks Bằng Koehler Leman, Julia, Weitzner, Brian D, Lewis, Steven M, Adolf-Bryfogle, Jared, Alam, Nawsad, Alford, Rebecca F, Aprahamian, Melanie, Baker, David, Barlow, Kyle A, Barth, Patrick, Basanta, Benjamin, Bender, Brian J, Blacklock, Kristin, Bonet, Jaume, Boyken, Scott, Bradley, Phil, Bystroff, Chris, Conway, Patrick, Cooper, Seth, Correia, Bruno E, Coventry, Brian, Das, Rhiju, De Jong, René M, DiMaio, Frank, Dsilva, Lorna, Dunbrack, Roland, Ford, Alex, Frenz, Brandon, Fu, Darwin Y, Geniesse, Caleb, Goldschmidt, Lukasz, Gowthaman, Ragul, Gray, Jeffrey J, Gront, Dominik, Guffy, Sharon, Horowitz, Scott, Huang, Po-Ssu, Huber, Thomas, Jacobs, Tim M, Jeliazkov, Jeliazko R, Johnson, David K, Kappel, Kalli, Karanicolas, John, Khakzad, Hamed, Khar, Karen R, Khare, Sagar D, Khatib, Firas, Khramushin, Alisa, King, Indigo C, Kleffner, Robert, Koepnick, Brian, Kortemme, Tanja, Kuenze, Georg, Kuhlman, Brian, Kuroda, Daisuke, Labonte, Jason W, Lai, Jason K, Lapidoth, Gideon, Leaver-Fay, Andrew, Lindert, Steffen, Linsky, Thomas, London, Nir, Lubin, Joseph H, Lyskov, Sergey, Maguire, Jack, Malmström, Lars, Marcos, Enrique, Marcu, Orly, Marze, Nicholas A, Meiler, Jens, Moretti, Rocco, Mulligan, Vikram Khipple, Nerli, Santrupti, Norn, Christoffer, Ó’Conchúir, Shane, Ollikainen, Noah, Ovchinnikov, Sergey, Pacella, Michael S, Pan, Xingjie, Park, Hahnbeom, Pavlovicz, Ryan E, Pethe, Manasi, Pierce, Brian G, Pilla, Kala Bharath, Raveh, Barak, Renfrew, P Douglas, Roy Burman, Shourya S, Rubenstein, Aliza, Sauer, Marion F, Scheck, Andreas, Schief, William, Schueler-Furman, Ora, Sedan, Yuval, Sevy, Alexander M, Sgourakis, Nikolaos G, Shi, Lei, Siegel, Justin, Silva, Daniel-Adriano, Smith, Shannon, Song, Yifan, Stein, Amelie, Szegedy, Maria, Teets, Frank D, Thyme, Summer B, Wang, Ray Yu-Ruei, Watkins, Andrew, Zimmerman, Lior, Bonneau, Richard

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