Rezultati - Ollikainen, Noah

Computational Protein Design Quantifies Structural Constraints on Amino Acid Covariation od Ollikainen, Noah, Kortemme, Tanja

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Structural analysis of the evolution of steroid specificity in the mineralocorticoid and glucocorticoid receptors od Baker, Michael E, Chandsawangbhuwana, Charlie, Ollikainen, Noah

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Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity od Ollikainen, Noah, de Jong, René M., Kortemme, Tanja

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Methods in Enzymology: “Flexible backbone sampling methods to model and design protein alternative conformations” od Ollikainen, Noah, Smith, Colin A., Fraser, James S., Kortemme, Tanja

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Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition od Melero, Cristina, Ollikainen, Noah, Harwood, Ian, Karpiak, Joel, Kortemme, Tanja

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Amino-acid site variability among natural and designed proteins od Jackson, Eleisha L., Ollikainen, Noah, Covert, Arthur W., Kortemme, Tanja, Wilke, Claus O.

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Widespread Protein Aggregation as an Inherent Part of Aging in C. elegans od David, Della C., Ollikainen, Noah, Trinidad, Jonathan C., Cary, Michael P., Burlingame, Alma L., Kenyon, Cynthia

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A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design od Ó Conchúir, Shane, Barlow, Kyle A., Pache, Roland A., Ollikainen, Noah, Kundert, Kale, O'Meara, Matthew J., Smith, Colin A., Kortemme, Tanja

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Integrated spatial genomics reveals global architecture of single nuclei od Takei, Yodai, Yun, Jina, Zheng, Shiwei, Ollikainen, Noah, Pierson, Nico, White, Jonathan, Shah, Sheel, Thomassie, Julian, Suo, Shengbao, Eng, Chee-Huat Linus, Guttman, Mitchell, Yuan, Guo-Cheng, Cai, Long

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RNA promotes the formation of spatial compartments in the nucleus od Quinodoz, Sofia A., Jachowicz, Joanna W., Bhat, Prashant, Ollikainen, Noah, Banerjee, Abhik K., Goronzy, Isabel N., Blanco, Mario R., Chovanec, Peter, Chow, Amy, Markaki, Yolanda, Thai, Jasmine, Plath, Kathrin, Guttman, Mitchell

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Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes od Gupta, Nitin, Benhamida, Jamal, Bhargava, Vipul, Goodman, Daniel, Kain, Elisabeth, Kerman, Ian, Nguyen, Ngan, Ollikainen, Noah, Rodriguez, Jesse, Wang, Jian, Lipton, Mary S., Romine, Margaret, Bafna, Vineet, Smith, Richard D., Pevzner, Pavel A.

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Systems-level effects of allosteric perturbations to a model molecular switch od Perica, Tina, Mathy, Christopher J. P., Xu, Jiewei, Jang, Gwendolyn M., Zhang, Yang, Kaake, Robyn, Ollikainen, Noah, Braberg, Hannes, Swaney, Danielle L., Lambright, David G., Kelly, Mark J. S., Krogan, Nevan J., Kortemme, Tanja

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Computational design of a modular protein sense/response system od Glasgow, Anum A., Huang, Yao-Ming, Mandell, Daniel J., Thompson, Michael, Ritterson, Ryan, Loshbaugh, Amanda L., Pellegrino, Jenna, Krivacic, Cody, Pache, Roland A., Barlow, Kyle A., Ollikainen, Noah, Jeon, Deborah, Kelly, Mark J. S., Fraser, James S., Kortemme, Tanja

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Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus od Quinodoz, Sofia A., Ollikainen, Noah, Tabak, Barbara, Palla, Ali, Schmidt, Jan Marten, Detmar, Elizabeth, Lai, Mason M., Shishkin, Alexander A., Bhat, Prashant, Takei, Yodai, Trinh, Vickie, Aznauryan, Erik, Russell, Pamela, Cheng, Christine, Jovanovic, Marko, Chow, Amy, Cai, Long, McDonel, Patrick, Garber, Manuel, Guttman, Mitchell

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SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses od Banerjee, Abhik K., Blanco, Mario R., Bruce, Emily A., Honson, Drew D., Chen, Linlin M., Chow, Amy, Bhat, Prashant, Ollikainen, Noah, Quinodoz, Sofia A., Loney, Colin, Thai, Jasmine, Miller, Zachary D., Lin, Aaron E., Schmidt, Madaline M., Stewart, Douglas G., Goldfarb, Daniel, De Lorenzo, Giuditta, Rihn, Suzannah J., Voorhees, Rebecca M., Botten, Jason W., Majumdar, Devdoot, Guttman, Mitchell

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Macromolecular modeling and design in Rosetta: recent methods and frameworks od Koehler Leman, Julia, Weitzner, Brian D, Lewis, Steven M, Adolf-Bryfogle, Jared, Alam, Nawsad, Alford, Rebecca F, Aprahamian, Melanie, Baker, David, Barlow, Kyle A, Barth, Patrick, Basanta, Benjamin, Bender, Brian J, Blacklock, Kristin, Bonet, Jaume, Boyken, Scott, Bradley, Phil, Bystroff, Chris, Conway, Patrick, Cooper, Seth, Correia, Bruno E, Coventry, Brian, Das, Rhiju, De Jong, René M, DiMaio, Frank, Dsilva, Lorna, Dunbrack, Roland, Ford, Alex, Frenz, Brandon, Fu, Darwin Y, Geniesse, Caleb, Goldschmidt, Lukasz, Gowthaman, Ragul, Gray, Jeffrey J, Gront, Dominik, Guffy, Sharon, Horowitz, Scott, Huang, Po-Ssu, Huber, Thomas, Jacobs, Tim M, Jeliazkov, Jeliazko R, Johnson, David K, Kappel, Kalli, Karanicolas, John, Khakzad, Hamed, Khar, Karen R, Khare, Sagar D, Khatib, Firas, Khramushin, Alisa, King, Indigo C, Kleffner, Robert, Koepnick, Brian, Kortemme, Tanja, Kuenze, Georg, Kuhlman, Brian, Kuroda, Daisuke, Labonte, Jason W, Lai, Jason K, Lapidoth, Gideon, Leaver-Fay, Andrew, Lindert, Steffen, Linsky, Thomas, London, Nir, Lubin, Joseph H, Lyskov, Sergey, Maguire, Jack, Malmström, Lars, Marcos, Enrique, Marcu, Orly, Marze, Nicholas A, Meiler, Jens, Moretti, Rocco, Mulligan, Vikram Khipple, Nerli, Santrupti, Norn, Christoffer, Ó’Conchúir, Shane, Ollikainen, Noah, Ovchinnikov, Sergey, Pacella, Michael S, Pan, Xingjie, Park, Hahnbeom, Pavlovicz, Ryan E, Pethe, Manasi, Pierce, Brian G, Pilla, Kala Bharath, Raveh, Barak, Renfrew, P Douglas, Roy Burman, Shourya S, Rubenstein, Aliza, Sauer, Marion F, Scheck, Andreas, Schief, William, Schueler-Furman, Ora, Sedan, Yuval, Sevy, Alexander M, Sgourakis, Nikolaos G, Shi, Lei, Siegel, Justin, Silva, Daniel-Adriano, Smith, Shannon, Song, Yifan, Stein, Amelie, Szegedy, Maria, Teets, Frank D, Thyme, Summer B, Wang, Ray Yu-Ruei, Watkins, Andrew, Zimmerman, Lior, Bonneau, Richard

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