Risultati della ricerca - Ollikainen, Noah

Computational Protein Design Quantifies Structural Constraints on Amino Acid Covariation di Ollikainen, Noah, Kortemme, Tanja

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Structural analysis of the evolution of steroid specificity in the mineralocorticoid and glucocorticoid receptors di Baker, Michael E, Chandsawangbhuwana, Charlie, Ollikainen, Noah

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Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity di Ollikainen, Noah, de Jong, René M., Kortemme, Tanja

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Methods in Enzymology: “Flexible backbone sampling methods to model and design protein alternative conformations” di Ollikainen, Noah, Smith, Colin A., Fraser, James S., Kortemme, Tanja

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Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition di Melero, Cristina, Ollikainen, Noah, Harwood, Ian, Karpiak, Joel, Kortemme, Tanja

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Amino-acid site variability among natural and designed proteins di Jackson, Eleisha L., Ollikainen, Noah, Covert, Arthur W., Kortemme, Tanja, Wilke, Claus O.

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Widespread Protein Aggregation as an Inherent Part of Aging in C. elegans di David, Della C., Ollikainen, Noah, Trinidad, Jonathan C., Cary, Michael P., Burlingame, Alma L., Kenyon, Cynthia

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A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design di Ó Conchúir, Shane, Barlow, Kyle A., Pache, Roland A., Ollikainen, Noah, Kundert, Kale, O'Meara, Matthew J., Smith, Colin A., Kortemme, Tanja

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Integrated spatial genomics reveals global architecture of single nuclei di Takei, Yodai, Yun, Jina, Zheng, Shiwei, Ollikainen, Noah, Pierson, Nico, White, Jonathan, Shah, Sheel, Thomassie, Julian, Suo, Shengbao, Eng, Chee-Huat Linus, Guttman, Mitchell, Yuan, Guo-Cheng, Cai, Long

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RNA promotes the formation of spatial compartments in the nucleus di Quinodoz, Sofia A., Jachowicz, Joanna W., Bhat, Prashant, Ollikainen, Noah, Banerjee, Abhik K., Goronzy, Isabel N., Blanco, Mario R., Chovanec, Peter, Chow, Amy, Markaki, Yolanda, Thai, Jasmine, Plath, Kathrin, Guttman, Mitchell

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Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes di Gupta, Nitin, Benhamida, Jamal, Bhargava, Vipul, Goodman, Daniel, Kain, Elisabeth, Kerman, Ian, Nguyen, Ngan, Ollikainen, Noah, Rodriguez, Jesse, Wang, Jian, Lipton, Mary S., Romine, Margaret, Bafna, Vineet, Smith, Richard D., Pevzner, Pavel A.

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Systems-level effects of allosteric perturbations to a model molecular switch di Perica, Tina, Mathy, Christopher J. P., Xu, Jiewei, Jang, Gwendolyn M., Zhang, Yang, Kaake, Robyn, Ollikainen, Noah, Braberg, Hannes, Swaney, Danielle L., Lambright, David G., Kelly, Mark J. S., Krogan, Nevan J., Kortemme, Tanja

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Computational design of a modular protein sense/response system di Glasgow, Anum A., Huang, Yao-Ming, Mandell, Daniel J., Thompson, Michael, Ritterson, Ryan, Loshbaugh, Amanda L., Pellegrino, Jenna, Krivacic, Cody, Pache, Roland A., Barlow, Kyle A., Ollikainen, Noah, Jeon, Deborah, Kelly, Mark J. S., Fraser, James S., Kortemme, Tanja

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Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus di Quinodoz, Sofia A., Ollikainen, Noah, Tabak, Barbara, Palla, Ali, Schmidt, Jan Marten, Detmar, Elizabeth, Lai, Mason M., Shishkin, Alexander A., Bhat, Prashant, Takei, Yodai, Trinh, Vickie, Aznauryan, Erik, Russell, Pamela, Cheng, Christine, Jovanovic, Marko, Chow, Amy, Cai, Long, McDonel, Patrick, Garber, Manuel, Guttman, Mitchell

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SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses di Banerjee, Abhik K., Blanco, Mario R., Bruce, Emily A., Honson, Drew D., Chen, Linlin M., Chow, Amy, Bhat, Prashant, Ollikainen, Noah, Quinodoz, Sofia A., Loney, Colin, Thai, Jasmine, Miller, Zachary D., Lin, Aaron E., Schmidt, Madaline M., Stewart, Douglas G., Goldfarb, Daniel, De Lorenzo, Giuditta, Rihn, Suzannah J., Voorhees, Rebecca M., Botten, Jason W., Majumdar, Devdoot, Guttman, Mitchell

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Macromolecular modeling and design in Rosetta: recent methods and frameworks di Koehler Leman, Julia, Weitzner, Brian D, Lewis, Steven M, Adolf-Bryfogle, Jared, Alam, Nawsad, Alford, Rebecca F, Aprahamian, Melanie, Baker, David, Barlow, Kyle A, Barth, Patrick, Basanta, Benjamin, Bender, Brian J, Blacklock, Kristin, Bonet, Jaume, Boyken, Scott, Bradley, Phil, Bystroff, Chris, Conway, Patrick, Cooper, Seth, Correia, Bruno E, Coventry, Brian, Das, Rhiju, De Jong, René M, DiMaio, Frank, Dsilva, Lorna, Dunbrack, Roland, Ford, Alex, Frenz, Brandon, Fu, Darwin Y, Geniesse, Caleb, Goldschmidt, Lukasz, Gowthaman, Ragul, Gray, Jeffrey J, Gront, Dominik, Guffy, Sharon, Horowitz, Scott, Huang, Po-Ssu, Huber, Thomas, Jacobs, Tim M, Jeliazkov, Jeliazko R, Johnson, David K, Kappel, Kalli, Karanicolas, John, Khakzad, Hamed, Khar, Karen R, Khare, Sagar D, Khatib, Firas, Khramushin, Alisa, King, Indigo C, Kleffner, Robert, Koepnick, Brian, Kortemme, Tanja, Kuenze, Georg, Kuhlman, Brian, Kuroda, Daisuke, Labonte, Jason W, Lai, Jason K, Lapidoth, Gideon, Leaver-Fay, Andrew, Lindert, Steffen, Linsky, Thomas, London, Nir, Lubin, Joseph H, Lyskov, Sergey, Maguire, Jack, Malmström, Lars, Marcos, Enrique, Marcu, Orly, Marze, Nicholas A, Meiler, Jens, Moretti, Rocco, Mulligan, Vikram Khipple, Nerli, Santrupti, Norn, Christoffer, Ó’Conchúir, Shane, Ollikainen, Noah, Ovchinnikov, Sergey, Pacella, Michael S, Pan, Xingjie, Park, Hahnbeom, Pavlovicz, Ryan E, Pethe, Manasi, Pierce, Brian G, Pilla, Kala Bharath, Raveh, Barak, Renfrew, P Douglas, Roy Burman, Shourya S, Rubenstein, Aliza, Sauer, Marion F, Scheck, Andreas, Schief, William, Schueler-Furman, Ora, Sedan, Yuval, Sevy, Alexander M, Sgourakis, Nikolaos G, Shi, Lei, Siegel, Justin, Silva, Daniel-Adriano, Smith, Shannon, Song, Yifan, Stein, Amelie, Szegedy, Maria, Teets, Frank D, Thyme, Summer B, Wang, Ray Yu-Ruei, Watkins, Andrew, Zimmerman, Lior, Bonneau, Richard

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