Søgeresultater - Ollikainen, Noah

Computational Protein Design Quantifies Structural Constraints on Amino Acid Covariation af Ollikainen, Noah, Kortemme, Tanja

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Structural analysis of the evolution of steroid specificity in the mineralocorticoid and glucocorticoid receptors af Baker, Michael E, Chandsawangbhuwana, Charlie, Ollikainen, Noah

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Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity af Ollikainen, Noah, de Jong, René M., Kortemme, Tanja

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Methods in Enzymology: “Flexible backbone sampling methods to model and design protein alternative conformations” af Ollikainen, Noah, Smith, Colin A., Fraser, James S., Kortemme, Tanja

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Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition af Melero, Cristina, Ollikainen, Noah, Harwood, Ian, Karpiak, Joel, Kortemme, Tanja

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Amino-acid site variability among natural and designed proteins af Jackson, Eleisha L., Ollikainen, Noah, Covert, Arthur W., Kortemme, Tanja, Wilke, Claus O.

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Widespread Protein Aggregation as an Inherent Part of Aging in C. elegans af David, Della C., Ollikainen, Noah, Trinidad, Jonathan C., Cary, Michael P., Burlingame, Alma L., Kenyon, Cynthia

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A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design af Ó Conchúir, Shane, Barlow, Kyle A., Pache, Roland A., Ollikainen, Noah, Kundert, Kale, O'Meara, Matthew J., Smith, Colin A., Kortemme, Tanja

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Integrated spatial genomics reveals global architecture of single nuclei af Takei, Yodai, Yun, Jina, Zheng, Shiwei, Ollikainen, Noah, Pierson, Nico, White, Jonathan, Shah, Sheel, Thomassie, Julian, Suo, Shengbao, Eng, Chee-Huat Linus, Guttman, Mitchell, Yuan, Guo-Cheng, Cai, Long

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RNA promotes the formation of spatial compartments in the nucleus af Quinodoz, Sofia A., Jachowicz, Joanna W., Bhat, Prashant, Ollikainen, Noah, Banerjee, Abhik K., Goronzy, Isabel N., Blanco, Mario R., Chovanec, Peter, Chow, Amy, Markaki, Yolanda, Thai, Jasmine, Plath, Kathrin, Guttman, Mitchell

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Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes af Gupta, Nitin, Benhamida, Jamal, Bhargava, Vipul, Goodman, Daniel, Kain, Elisabeth, Kerman, Ian, Nguyen, Ngan, Ollikainen, Noah, Rodriguez, Jesse, Wang, Jian, Lipton, Mary S., Romine, Margaret, Bafna, Vineet, Smith, Richard D., Pevzner, Pavel A.

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Systems-level effects of allosteric perturbations to a model molecular switch af Perica, Tina, Mathy, Christopher J. P., Xu, Jiewei, Jang, Gwendolyn M., Zhang, Yang, Kaake, Robyn, Ollikainen, Noah, Braberg, Hannes, Swaney, Danielle L., Lambright, David G., Kelly, Mark J. S., Krogan, Nevan J., Kortemme, Tanja

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Computational design of a modular protein sense/response system af Glasgow, Anum A., Huang, Yao-Ming, Mandell, Daniel J., Thompson, Michael, Ritterson, Ryan, Loshbaugh, Amanda L., Pellegrino, Jenna, Krivacic, Cody, Pache, Roland A., Barlow, Kyle A., Ollikainen, Noah, Jeon, Deborah, Kelly, Mark J. S., Fraser, James S., Kortemme, Tanja

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Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus af Quinodoz, Sofia A., Ollikainen, Noah, Tabak, Barbara, Palla, Ali, Schmidt, Jan Marten, Detmar, Elizabeth, Lai, Mason M., Shishkin, Alexander A., Bhat, Prashant, Takei, Yodai, Trinh, Vickie, Aznauryan, Erik, Russell, Pamela, Cheng, Christine, Jovanovic, Marko, Chow, Amy, Cai, Long, McDonel, Patrick, Garber, Manuel, Guttman, Mitchell

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SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses af Banerjee, Abhik K., Blanco, Mario R., Bruce, Emily A., Honson, Drew D., Chen, Linlin M., Chow, Amy, Bhat, Prashant, Ollikainen, Noah, Quinodoz, Sofia A., Loney, Colin, Thai, Jasmine, Miller, Zachary D., Lin, Aaron E., Schmidt, Madaline M., Stewart, Douglas G., Goldfarb, Daniel, De Lorenzo, Giuditta, Rihn, Suzannah J., Voorhees, Rebecca M., Botten, Jason W., Majumdar, Devdoot, Guttman, Mitchell

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Macromolecular modeling and design in Rosetta: recent methods and frameworks af Koehler Leman, Julia, Weitzner, Brian D, Lewis, Steven M, Adolf-Bryfogle, Jared, Alam, Nawsad, Alford, Rebecca F, Aprahamian, Melanie, Baker, David, Barlow, Kyle A, Barth, Patrick, Basanta, Benjamin, Bender, Brian J, Blacklock, Kristin, Bonet, Jaume, Boyken, Scott, Bradley, Phil, Bystroff, Chris, Conway, Patrick, Cooper, Seth, Correia, Bruno E, Coventry, Brian, Das, Rhiju, De Jong, René M, DiMaio, Frank, Dsilva, Lorna, Dunbrack, Roland, Ford, Alex, Frenz, Brandon, Fu, Darwin Y, Geniesse, Caleb, Goldschmidt, Lukasz, Gowthaman, Ragul, Gray, Jeffrey J, Gront, Dominik, Guffy, Sharon, Horowitz, Scott, Huang, Po-Ssu, Huber, Thomas, Jacobs, Tim M, Jeliazkov, Jeliazko R, Johnson, David K, Kappel, Kalli, Karanicolas, John, Khakzad, Hamed, Khar, Karen R, Khare, Sagar D, Khatib, Firas, Khramushin, Alisa, King, Indigo C, Kleffner, Robert, Koepnick, Brian, Kortemme, Tanja, Kuenze, Georg, Kuhlman, Brian, Kuroda, Daisuke, Labonte, Jason W, Lai, Jason K, Lapidoth, Gideon, Leaver-Fay, Andrew, Lindert, Steffen, Linsky, Thomas, London, Nir, Lubin, Joseph H, Lyskov, Sergey, Maguire, Jack, Malmström, Lars, Marcos, Enrique, Marcu, Orly, Marze, Nicholas A, Meiler, Jens, Moretti, Rocco, Mulligan, Vikram Khipple, Nerli, Santrupti, Norn, Christoffer, Ó’Conchúir, Shane, Ollikainen, Noah, Ovchinnikov, Sergey, Pacella, Michael S, Pan, Xingjie, Park, Hahnbeom, Pavlovicz, Ryan E, Pethe, Manasi, Pierce, Brian G, Pilla, Kala Bharath, Raveh, Barak, Renfrew, P Douglas, Roy Burman, Shourya S, Rubenstein, Aliza, Sauer, Marion F, Scheck, Andreas, Schief, William, Schueler-Furman, Ora, Sedan, Yuval, Sevy, Alexander M, Sgourakis, Nikolaos G, Shi, Lei, Siegel, Justin, Silva, Daniel-Adriano, Smith, Shannon, Song, Yifan, Stein, Amelie, Szegedy, Maria, Teets, Frank D, Thyme, Summer B, Wang, Ray Yu-Ruei, Watkins, Andrew, Zimmerman, Lior, Bonneau, Richard

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