Search Results - Oliver Hofmann

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  1. 1
    Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls

    Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls by Justin M. Zook, Brad Chapman, Jason Wang, David Mittelman, Oliver Hofmann, Yoshihide Hayashizaki, Marc Salit

    Published 2014
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  2. 2
    Integrating sequencing datasets to form highly confident SNP and indel genotype calls for a whole human genome

    Integrating sequencing datasets to form highly confident SNP and indel genotype calls for a whole human genome by Justin M. Zook, Brad Chapman, Jason Wang, David Mittelman, Oliver Hofmann, Yoshihide Hayashizaki, Marc Salit

    Published 2013
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  3. 3
    Sequencing of Captive Target Transcripts Identifies the Network of Regulated Genes and Functions of Primate-Specific miR-522

    Sequencing of Captive Target Transcripts Identifies the Network of Regulated Genes and Functions of Primate-Specific miR-522 by Shen Mynn Tan, Rory Kirchner, Jingmin Jin, Oliver Hofmann, Larry McReynolds, Yoshihide Hayashizaki, Judy Lieberman

    Published 2014
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  4. 4
    Clonal dynamics of native haematopoiesis

    Clonal dynamics of native haematopoiesis by Jianlong Sun, Azucena Ramos, Brad Chapman, Jonathan B. Johnnidis, Linda Le, Yu-Jui Ho, Allon M. Klein, Oliver Hofmann, Fernando D. Camargo

    Published 2014
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  5. 5
    Aberrant lipid metabolism disrupts calcium homeostasis causing liver endoplasmic reticulum stress in obesity

    Aberrant lipid metabolism disrupts calcium homeostasis causing liver endoplasmic reticulum stress in obesity by Suneng Fu, Ling Yang, Ping Li, Oliver Hofmann, Lee H. Dicker, Yoshihide Hayashizaki, Xihong Lin, Steven M. Watkins, Alexander R. Ivanov, Gökhan S. Hotamışlıgil

    Published 2011
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  6. 6
    VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research

    VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research by Zhongwu Lai, Aleksandra Markovets, Miika Ahdesmäki, Brad Chapman, Oliver Hofmann, Robert McEwen, Justin Johnson, Brian Dougherty, J. Carl Barrett, Jonathan R. Dry

    Published 2016
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  7. 7
    Whole‐genome sequencing reveals new Alzheimer's disease–associated rare variants in loci related to synaptic function and neuronal development

    Whole‐genome sequencing reveals new Alzheimer's disease–associated rare variants in loci related to synaptic function and neuronal development by Dmitry Prokopenko, Sarah Morgan, Kristina Mullin, Oliver Hofmann, Brad Chapman, Rory Kirchner, Sandeep Amberkar, Inken Wohlers, Christoph Lange, Yoshihide Hayashizaki, Lars Bertram, Rudolph E. Tanzi

    Published 2021
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  8. 8
    Cell-specific translational profiling in acute kidney injury

    Cell-specific translational profiling in acute kidney injury by Jing Liu, A. Michaela Krautzberger, Shannan Ho Sui, Oliver Hofmann, Ying Chen, Manfred Baetscher, Ivica Grgic, Sanjeev Kumar, Benjamin D. Humphreys, Yoshihide Hayashizaki, Andrew P. McMahon

    Published 2014
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  9. 9
    HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay

    HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay by Sara Sunshine, Rory Kirchner, Sami S. Amr, Leandra Mansur, Rimma Shakhbatyan, Michelle Kim, Alberto Bosque, Robert F. Siliciano, Vicente Planelles, Oliver Hofmann, Shannan Ho Sui, Jonathan Z. Li

    Published 2016
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  10. 10
    ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

    ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level by Philippe Rocca‐Serra, Marco Brandizi, Eamonn Maguire, Nataliya Sklyar, Chris Taylor, Kimberly Begley, Dawn Field, Stephen Harris, Yoshihide Hayashizaki, Oliver Hofmann, Steffen Neumann, Peter Sterk, Weida Tong, Susanna‐Assunta Sansone

    Published 2010
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  11. 11
    Mice and Men: Their Promoter Properties

    Mice and Men: Their Promoter Properties by Vladimir B. Bajić, Sin Lam Tan, Alan Christoffels, Christian Schönbach, Leonard Lipovich, Liang Yang, Oliver Hofmann, Adéle Kruger, Yoshihide Hayashizaki, Chikatoshi Kai, Jun Kawai, David Hume, Piero Carninci, Yoshihide Hayashizaki

    Published 2006
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  12. 12
    A network of epigenetic regulators guides developmental haematopoiesis in vivo

    A network of epigenetic regulators guides developmental haematopoiesis in vivo by Hsuan-Ting Huang, Katie L. Kathrein, Abby Barton, Zachary Gitlin, Yuehua Huang, Thomas P. Ward, Oliver Hofmann, Anthony DiBiase, Anhua Song, Svitlana Tyekucheva, Yoshihide Hayashizaki, Yi Zhou, Leonard I. Zon

    Published 2013
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  13. 13
    miR-24 Inhibits Cell Proliferation by Targeting E2F2, MYC, and Other Cell-Cycle Genes via Binding to “Seedless” 3′UTR MicroRNA Recognition Elements

    miR-24 Inhibits Cell Proliferation by Targeting E2F2, MYC, and Other Cell-Cycle Genes via Binding to “Seedless” 3′UTR MicroRNA Recognition Elements by Ashish Lal, Francisco Navarro, Christopher A. Maher, Laura Maliszewski, Nan Yan, Elizabeth O’Day, Dipanjan Chowdhury, Derek M. Dykxhoorn, Perry Tsai, Oliver Hofmann, Kevin G. Becker, Myriam Gorospe, Yoshihide Hayashizaki, Judy Lieberman

    Published 2009
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  14. 14
    A functional genomic screen reveals novel host genes that mediate interferon-alpha’s effects against hepatitis C virus

    A functional genomic screen reveals novel host genes that mediate interferon-alpha’s effects against hepatitis C virus by Hong Zhao, Wenyu Lin, Kattareeya Kumthip, Cheng Du, Dahlene N. Fusco, Oliver Hofmann, Nikolaus Jilg, Andrew W. Tai, Kaku Goto, Leiliang Zhang, Yoshihide Hayashizaki, Jae Young Jang, Lee F. Peng, Raymond T. Chung

    Published 2011
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  15. 15
    Prioritisation of Structural Variant Calls in Cancer Genomes

    Prioritisation of Structural Variant Calls in Cancer Genomes by Miika Ahdesmäki, Brad Chapman, Pablo E. Cingolani, Oliver Hofmann, Aleksandr Sidoruk, Zhongwu Lai, Г. А. Захаров, Mikhail Rodichenko, Mikhail Alperovich, David F. Jenkins, T. Hedley Carr, Daniel Stetson, Brian Dougherty, J. Carl Barrett, Justin Johnson

    Published 2016
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  16. 16
    Capture of MicroRNA–Bound mRNAs Identifies the Tumor Suppressor miR-34a as a Regulator of Growth Factor Signaling

    Capture of MicroRNA–Bound mRNAs Identifies the Tumor Suppressor miR-34a as a Regulator of Growth Factor Signaling by Ashish Lal, Marshall P. Thomas, Gabriel Altschuler, Francisco Navarro, Elizabeth O’Day, Xiao Ling Li, Carla P. Concepcion, Yoon-Chi Han, Jérôme Thiery, Danielle K. Rajani, Aaron J. Deutsch, Oliver Hofmann, Andrea Ventura, Yoshihide Hayashizaki, Judy Lieberman

    Published 2011
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  17. 17
    RNA Sequencing Identifies Novel Translational Biomarkers of Kidney Fibrosis

    RNA Sequencing Identifies Novel Translational Biomarkers of Kidney Fibrosis by Florin L. Craciun, Vanesa Bijol, Amrendra K. Ajay, Poornima Rao, Ramya K. Kumar, John N. Hutchinson, Oliver Hofmann, Nikita Joshi, James P. Luyendyk, Ulrike Kusebauch, Christopher L. Moss, Anand Srivastava, Jonathan Himmelfarb, Sushrut S. Waikar, Robert L. Moritz, Vishal S. Vaidya

    Published 2015
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  18. 18
    Genome-wide analysis of cancer/testis gene expression

    Genome-wide analysis of cancer/testis gene expression by Oliver Hofmann, Otávia L. Caballero, Brian J. Stevenson, Yao-Tseng Chen, Tzeela Cohen, Ramon Chua, Christopher A. Maher, Sumir Panji, Ulf Schaefer, Adéle Kruger, Minna Lehväslaiho, Piero Carninci, Yoshihide Hayashizaki, C. Victor Jongeneel, Andrew J.G. Simpson, Lloyd J. Old, Yoshihide Hayashizaki

    Published 2008
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  19. 19
    ASTD: The Alternative Splicing and Transcript Diversity database

    ASTD: The Alternative Splicing and Transcript Diversity database by Gautier Koscielny, Vincent Le Texier, Chellappa Gopalakrishnan, Vasudev Kumanduri, Jean-Jack M. Riethoven, Francesco Nardone, Eleanor Stanley, Christine Fallsehr, Oliver Hofmann, Meelis Kull, Eoghan Harrington, Stéphanie Boué, Eduardo Eyras, Mireya Plass, Fabrice Lopez, William Ritchie, Virginie Moucadel, Takeshi Ara, Heike Pospisil, Alexander Herrmann, J. Reich, Roderic Guigó, Peer Bork, Magnus von Knebel Doeberitz, Jaak Vilo, Yoshihide Hayashizaki, Rolf Apweiler, Thangavel Alphonse Thanaraj, Daniel Gautheret

    Published 2008
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  20. 20
    RAF1 rearrangements are common in pancreatic acinar cell carcinomas

    RAF1 rearrangements are common in pancreatic acinar cell carcinomas by Owen W.J. Prall, Violeta Nastevski, Huiling Xu, Christopher R. McEvoy, Joseph H.A. Vissers, David J. Byrne, Elena A. Takano, Satwica Yerneni, Sarah Ellis, Thomas Green, Catherine Mitchell, William K. Murray, Clare L. Scott, Sean M. Grimmond, Oliver Hofmann, Anthony T. Papenfuss, Damien Kee, Andrew Fellowes, Ian Brown, Gregory Miller, M. Priyanthi Kumarasinghe, Aurel Perren, Christopher B. Nahm, Anubhav Mittal, Jaswinder S. Samra, Mahsa Ahadi, Stephen B. Fox, Angela Chou, Anthony J. Gill

    Published 2020
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