Search Results - Nicholas D. Sanderson

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  1. 1
    Metagenomic Sequencing as a Pathogen-Agnostic Clinical Diagnostic Tool for Infectious Diseases: a Systematic Review and Meta-analysis of Diagnostic Test Accuracy Studies

    Metagenomic Sequencing as a Pathogen-Agnostic Clinical Diagnostic Tool for Infectious Diseases: a Systematic Review and Meta-analysis of Diagnostic Test Accuracy Studies by Kumeren Govender, Teresa Street, Nicholas D. Sanderson, David W. Eyre

    Published 2021
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  2. 2
    Nanopore adaptive sampling for bacterial identification from periprosthetic joint replacement tissue

    Nanopore adaptive sampling for bacterial identification from periprosthetic joint replacement tissue by Teresa L. Street, Philip Bejon, Laura Leach, Sarah Oakley, Bernadette C. Young, Nicholas D. Sanderson

    Published 2025
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  3. 3
    Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing

    Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing by Nicholas D. Sanderson, Katie M.V. Hopkins, Matthew Colpus, Melody Parker, Samuel Lipworth, Derrick Crook, Nicole Stoesser

    Published 2024
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  4. 4
    Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing

    Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing by Nicholas D. Sanderson, Katie M.V. Hopkins, Matthew Colpus, Melody Parker, Samuel Lipworth, Derrick W. Crook, Nicole Stoesser

    Published 2024
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  5. 5
    High precision <i>Neisseria gonorrhoeae</i> variant and antimicrobial resistance calling from metagenomic Nanopore sequencing

    High precision <i>Neisseria gonorrhoeae</i> variant and antimicrobial resistance calling from metagenomic Nanopore sequencing by Nicholas D. Sanderson, Jeremy Swann, Leanne Barker, James Kavanagh, Sarah Hoosdally, Derrick W. Crook, Teresa Street, David W. Eyre

    Published 2020
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  6. 6
    Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction

    Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction by Nicholas D. Sanderson, Natalia Kapel, Gillian Rodger, Hermione J. Webster, Samuel Lipworth, Teresa Street, Tim Peto, Derrick W. Crook, Nicole Stoesser

    Published 2023
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  7. 7
    Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices

    Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices by Nicholas D. Sanderson, Teresa L. Street, Dona Foster, Jeremy Swann, Bridget L. Atkins, Andrew Brent, Martin McNally, Sarah Oakley, Adrian Taylor, Tim Peto, Derrick W. Crook, David W. Eyre

    Published 2018
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  8. 8
    Optimizing DNA Extraction Methods for Nanopore Sequencing of Neisseria gonorrhoeae Directly from Urine Samples

    Optimizing DNA Extraction Methods for Nanopore Sequencing of Neisseria gonorrhoeae Directly from Urine Samples by Teresa Street, Leanne Barker, Nicholas D. Sanderson, James Kavanagh, Sarah Hoosdally, Kevin Cole, Robert Newnham, Mathyruban Selvaratnam, Monique Andersson, Martin Llewelyn, Justin O’Grady, Derrick W. Crook, David W. Eyre

    Published 2019
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  9. 9
    Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid by Metagenomic Sequencing

    Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid by Metagenomic Sequencing by Teresa Street, Nicholas D. Sanderson, Bridget L. Atkins, Andrew Brent, Kevin Cole, Dona Foster, Martin McNally, Sarah Oakley, Leon Peto, Adrian Taylor, Tim Peto, Derrick W. Crook, David W. Eyre

    Published 2017
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  10. 10
    Gonorrhoea treatment failure caused by a Neisseria gonorrhoeae strain with combined ceftriaxone and high-level azithromycin resistance, England, February 2018

    Gonorrhoea treatment failure caused by a Neisseria gonorrhoeae strain with combined ceftriaxone and high-level azithromycin resistance, England, February 2018 by David W. Eyre, Nicholas D. Sanderson, Emily Lord, Natasha Regisford-Reimmer, Kevin Chau, Leanne Barker, Markus Morgan, Robert Newnham, Daniel Golparian, Magnus Unemo, Derrick W. Crook, Tim Peto, Gwenda Hughes, Michelle Cole, Helen Fifer, Anne Edwards, Monique Andersson

    Published 2018
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  11. 11
    Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection

    Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection by Teresa L. Street, Nicholas D. Sanderson, Camille Kolenda, James Kavanagh, Hayleah Pickford, Sarah Hoosdally, Jack Cregan, Carol Taunt, Emma Jones, Sarah Oakley, Bridget L. Atkins, Maria Dudareva, Martin McNally, Justin O’Grady, Derrick W. Crook, David W. Eyre

    Published 2022
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  12. 12
    Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

    Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples by Antonina A. Votintseva, Phelim Bradley, Louise Pankhurst, Carlos del Ojo Elías, Matthew Loose, Kayzad Nilgiriwala, Anirvan Chatterjee, E. Grace Smith, Nicholas D. Sanderson, Timothy M. Walker, Marcus Morgan, David Wyllie, Timothy M. Walker, Tim Peto, Derrick W. Crook, Zamin Iqbal

    Published 2017
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  13. 13
    Detection in the United Kingdom of the Neisseria gonorrhoeae FC428 clone, with ceftriaxone resistance and intermediate resistance to azithromycin, October to December 2018

    Detection in the United Kingdom of the Neisseria gonorrhoeae FC428 clone, with ceftriaxone resistance and intermediate resistance to azithromycin, October to December 2018 by David W. Eyre, Katy Town, Teresa Street, Leanne Barker, Nicholas D. Sanderson, Michelle Cole, Hamish Mohammed, Rachel Pitt, Maya Gobin, Charles Irish, Daniel Gardiner, James Sedgwick, Charles Beck, John Saunders, Deborah Turbitt, Clare Cook, Nick Phin, Bavithra Nathan, Paddy Horner, Helen Fifer

    Published 2019
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  14. 14
    Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

    Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes by Nicola De Maio, Liam P. Shaw, Alasdair T. M. Hubbard, Sophie George, Nicholas D. Sanderson, Jeremy Swann, Ryan R. Wick, Manal AbuOun, Emma Stubberfield, Sarah Hoosdally, Derrick W. Crook, Tim Peto, Anna E. Sheppard, Mark Bailey, Daniel S. Read, Muna F. Anjum, Timothy M. Walker, Nicole Stoesser

    Published 2019
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  15. 15
    Panton–Valentine leucocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial GWAS

    Panton–Valentine leucocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial GWAS by Bernadette C. Young, Sarah G. Earle, Sona Soeng, Poda Sar, Varun Kumar, Songly Hor, Vuthy Sar, Rachel Bousfield, Nicholas D. Sanderson, Leanne Barker, Nicole Stoesser, Katherine R. W. Emary, Christopher M. Parry, Emma K. Nickerson, Paul Turner, Rory Bowden, Derrick W. Crook, David Wyllie, Nicholas Day, Daniel J. Wilson, Catrin E. Moore

    Published 2019
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  16. 16
    Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

    Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny by Martin Hunt, Angie S. Hinrichs, D.P. Anderson, Lily Karim, Bethany L. Dearlove, Jeff Knaggs, Bede Constantinides, P. W. Fowler, Gillian Rodger, Teresa Street, Sheila Lumley, Hermione J. Webster, Theo Sanderson, Christopher Ruis, Nicola De Maio, Lucas Amenga–Etego, Dominic S. Y. Amuzu, Martín Avaro, Gordon A. Awandare, Reuben Ayivor-Djanie, Matthew Bashton, Elizabeth M. Batty, Yaw Bediako, Denise De Belder, Estefanía Benedetti, Andreas Bergthaler, Stefan A. Boers, Josefina Campos, Rosina Carr, Facundo Cuba, María Elena Dattero, Wanwisa Dejnirattisai, Alexander Dilthey, Kwabena Obeng Duedu, Lukas Endler, Ilka Engelmann, Ngiambudulu M. Francisco, Jonas Fuchs, Etienne Z. Gnimpiéba, Soraya Groc, Jones Gyamfi, Dennis Heemskerk, Torsten Houwaart, Marvin Hsiao, Matthew R. Huska, Martin Hölzer, Arash Iranzadeh, Hanna Jarva, Chandima Jeewandara, Bani Jolly, R Joseph, Ravi Kant, Karrie Kwan Ki Ko, Satu Kurkela, Maija Lappalainen, Marie Lataretu, Chang Liu, Gathsaurie Neelika Malavige, Tapfumanei Mashe, Juthathip Mongkolsapaya, Brigitte Montès, José Arturo Molina-Mora, Collins M. Morang’a, Bernard Mvula, Niranjan Nagarajan, Andrew Nelson, Joyce M. Ngoi, Joana Paixão, Marcus Panning, Tomás Poklépovich, Peter K. Quashie, D.M.S.H.K. Ranasinghe, Mara Russo, James Emmanuel San, Nicholas D. Sanderson, Vinod Scaria, Gavin Screaton, Tarja Sironen, Abay Sisay, Darren Smith, Teemu Smura, Piyada Supasa, Chayaporn Suphavilai, Jeremy Swann, Houriiyah Tegally, Bryan Tegomoh, Olli Vapalahti, Andreas Walker, Robert J. Wilkinson, Carolyn Williamson, Túlio de Oliveira, Tim Peto, Derrick W. Crook, Russell Corbett‐Detig, Zamin Iqbal

    Published 2024
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