Výsledky vyhledávání - Naveed Ishaque

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  1. 1
    EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations

    EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations Autor Zuguang Gu, Roland Eils, Matthias Schlesner, Naveed Ishaque

    Vydáno 2018
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  2. 2
    A mini-review on perturbation modelling across single-cell omic modalities

    A mini-review on perturbation modelling across single-cell omic modalities Autor George Gavriilidis, Vasileios Vasileiou, Aspasia Orfanou, Naveed Ishaque, Fotis Psomopoulos

    Vydáno 2024
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  3. 3
    Integrative Analysis of Multi-omics Data Identified EGFR and PTGS2 as Key Nodes in a Gene Regulatory Network Related to Immune Phenotypes in Head and Neck Cancer

    Integrative Analysis of Multi-omics Data Identified EGFR and PTGS2 as Key Nodes in a Gene Regulatory Network Related to Immune Phenotypes in Head and Neck Cancer Autor Bohai Feng, Ying Shen, Xavier Pastor Hostench, Matthias Bieg, Michaela Plath, Naveed Ishaque, Roland Eils, Kolja Freier, Wilko Weichert, Karim Zaoui, Jochen Heß

    Vydáno 2020
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  4. 4
    Single-cell analysis of patient-derived PDAC organoids reveals cell state heterogeneity and a conserved developmental hierarchy

    Single-cell analysis of patient-derived PDAC organoids reveals cell state heterogeneity and a conserved developmental hierarchy Autor Teresa G. Krieger, Solange Le Blanc, Julia Jabs, Foo Wei Ten, Naveed Ishaque, Katharina Jechow, Olivia Debnath, Carl-Stephan Leonhardt, Anamika Giri, Roland Eils, Oliver Strobel, Christian Conrad

    Vydáno 2021
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  5. 5
    Cell segmentation-free inference of cell types from in situ transcriptomics data

    Cell segmentation-free inference of cell types from in situ transcriptomics data Autor Jeongbin Park, Wonyl Choi, Sebastian Tiesmeyer, Brian Long, Lars E. Borm, Emma Garren, Thuc Nghi Nguyen, Bosiljka Tasic, Simone Codeluppi, Tobias Graf, Matthias Schlesner, Oliver Stegle, Roland Eils, Naveed Ishaque

    Vydáno 2021
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  6. 6
    Follicular T helper cells shape the HCV-specific CD4+ T cell repertoire after virus elimination

    Follicular T helper cells shape the HCV-specific CD4+ T cell repertoire after virus elimination Autor M Smits, Katharina Zoldan, Naveed Ishaque, Zuguang Gu, Katharina Jechow, Dominik Wieland, Christian Conrad, Roland Eils, Catherine Fauvelle, Thomas F. Baumert, Florian Emmerich, Bertram Bengsch, Christoph Neumann–Haefelin, Maike Hofmann, Robert Thimme, Tobias Boettler

    Vydáno 2019
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  7. 7
    2D, or not 2D? Investigating Vertical Signal Integrity of Tissue Slices

    2D, or not 2D? Investigating Vertical Signal Integrity of Tissue Slices Autor Sebastian Tiesmeyer, Niklas Müller‐Bötticher, Alexander Malt, Brian Long, Sergio Marco Salas, Paul Kießling, Paul Horn, Adrien Guillot, Louis Kümmerle, L.L. Ma, Frank Tacke, Fabian J. Theis, Christoph Kuppe, Mats Nilsson, Roland Eils, Naveed Ishaque

    Vydáno 2025
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  8. 8
    Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows

    Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows Autor Sergio Marco Salas, Paulo Czarnewski, Louis B. Kuemmerle, Saga Helgadóttir, Christoffer Mattsson Langseth, Sebastian Tismeyer, Christophe Avenel, Habib Rehman, Katarína Tiklová, Axel Andersson, Maria Chatzinikolaou, Fabian J. Theis, Malte D. Luecken, Carolina Wählby, Naveed Ishaque, Mats Nilsson

    Vydáno 2023
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  9. 9
    Single-Nucleus and In Situ RNA–Sequencing Reveal Cell Topographies in the Human Pancreas

    Single-Nucleus and In Situ RNA–Sequencing Reveal Cell Topographies in the Human Pancreas Autor Luca Tosti, Yan Hang, Olivia Debnath, Sebastian Tiesmeyer, Timo B. Trefzer, Katja Steiger, Foo Wei Ten, Soeren Lukassen, Simone Ballke, Anja A. Kühl, Simone Spieckermann, Rita Bottino, Naveed Ishaque, Wilko Weichert, Seung K. Kim, Roland Eils, Christian Conrad

    Vydáno 2020
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  10. 10
    Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows

    Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows Autor Sergio Marco Salas, Louis B. Kuemmerle, Christoffer Mattsson-Langseth, Sebastian Tismeyer, Christophe Avenel, Taobo Hu, Habib Rehman, Marco Grillo, Paulo Czarnewski, Saga Helgadóttir, Katarína Tiklová, Axel Andersson, Nima Rafati, Maria Chatzinikolaou, Fabian J. Theis, Malte D. Luecken, Carolina Wählby, Naveed Ishaque, Mats Nilsson

    Vydáno 2025
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  11. 11
    Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands

    Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands Autor Florian Haller, Matthias Bieg, Rainer Will, Cindy Körner, Dieter Weichenhan, Alexander Bott, Naveed Ishaque, Pavlo Lutsik, Evgeny A. Moskalev, Sarina K. Mueller, Marion Bähr, Angelika Woerner, Birgit Kaiser, Claudia Scherl, Marlen Haderlein, Kortine Kleinheinz, Rainer Fietkau, Heinrich Iro, Roland Eils, Arndt Hartmann, Christoph Plass, Stefan Wiemann, Abbas Agaimy

    Vydáno 2019
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  12. 12
    Robust methylation‐based classification of brain tumours using nanopore sequencing

    Robust methylation‐based classification of brain tumours using nanopore sequencing Autor Luis P. Kuschel, Jürgen Hench, Stephan Frank, Ivana Bratić Hench, Elodie Girard, Maud Blanluet, Julien Masliah‐Planchon, Martin Misch, Julia Onken, Marcus Czabanka, Dongsheng Yuan, Soeren Lukassen, Philipp Karau, Naveed Ishaque, Elisabeth G. Hain, Frank L. Heppner, Ahmed Idbaïh, Nikolaus Behr, Christoph Harms, David Capper, Philipp Euskirchen

    Vydáno 2022
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  13. 13
    Increased vitamin D levels at birth and in early infancy increase offspring allergy risk—evidence for involvement of epigenetic mechanisms

    Increased vitamin D levels at birth and in early infancy increase offspring allergy risk—evidence for involvement of epigenetic mechanisms Autor Kristin M. Junge, Tobias Bauer, Stefanie Geißler, Frank Hirche, Loreen Thürmann, Mario Bauer, Saskia Trump, Matthias Bieg, Dieter Weichenhan, Lei Gu, Jan‐Philipp Mallm, Naveed Ishaque, Oliver Mücke, Stefan Röder, Gunda Herberth, Ulrike Diez, Michael Borte, Karsten Rippe, Christoph Plass, Carl Hermann, Gabriele I. Stangl, Roland Eils, Irina Lehmann

    Vydáno 2015
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  14. 14
    Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks

    Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks Autor Jan‐Philipp Mallm, Murat Iskar, Naveed Ishaque, Lara C. Klett, Sabrina J. Kugler, José M. Muiño, Vladimir B. Teif, Alexandra M. Poos, Sebastian Großmann, Fabian Erdel, Daniele Tavernari, Sandra D. Koser, Sabrina Schumacher, Benedikt Brors, Rainer König, Daniel Remondini, Martin Vingron, Stephan Stilgenbauer, Peter Lichter, Marc Zapatka, Daniel Mertens, Karsten Rippe

    Vydáno 2019
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  15. 15
    Gene Expression in Solitary Fibrous Tumors (SFTs) Correlates with Anatomic Localization and NAB2-STAT6 Gene Fusion Variants

    Gene Expression in Solitary Fibrous Tumors (SFTs) Correlates with Anatomic Localization and NAB2-STAT6 Gene Fusion Variants Autor Matthias Bieg, Evgeny A. Moskalev, Rainer Will, Simone Hebele, Matthias Schwarzbach, Sanja Schmeck, Peter Hohenberger, Jens Jakob, Bernd Kasper, Timo Gaiser, Philip Ströbel, Eva Wardelmann, Udo Kontny, Till Braunschweig, Horia Sı̂rbu, Robert Grützmann, Norbert Meidenbauer, Naveed Ishaque, Roland Eils, Stefan Wiemann, Arndt Hartmann, Abbas Agaimy, Karen Fritchie, Caterina Giannini, Florian Haller

    Vydáno 2021
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  16. 16
    Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation

    Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation Autor Saskia Trump, Matthias Bieg, Zuguang Gu, Loreen Thürmann, Tobias Bauer, Mario Bauer, Naveed Ishaque, Stefan Röder, Lei Gu, Gunda Herberth, Christian Lawerenz, Michael Borte, Matthias Schlesner, Christoph Plass, Nicolle Diessl, Markus Eszlinger, Oliver Mücke, Horst-Dietrich Elvers, Dirk K. Wissenbach, Martin von Bergen�, Carl Herrmann, Dieter Weichenhan, Rosalind J. Wright, Irina Lehmann, Roland Eils

    Vydáno 2016
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  17. 17
    Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer

    Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer Autor Naveed Ishaque, Mohammed Abba, Christine Hauser, Nitin Patil, Nagarajan Paramasivam, Daniel Hüebschmann, Jörg H. Leupold, Gnana Prakash Balasubramanian, Kortine Kleinheinz, Umut H. Toprak, Barbara Hutter, Axel Benner, Anna Shavinskaya, Chan Zhou, Zuguang Gu, Jules N. A. Kerssemakers, Alexander Marx, Marcin Moniuszko, Mirosław Kozłowski, Joanna Reszeć, Jacek Nikliński, Roland Eils, Matthias Schlesner, Roland Eils, Benedikt Brors, Heike Allgayer

    Vydáno 2018
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  18. 18
    crossNN is an explainable framework for cross-platform DNA methylation-based classification of tumors

    crossNN is an explainable framework for cross-platform DNA methylation-based classification of tumors Autor Dongsheng Yuan, Robin Jugas, Petra Pokorná, Jaroslav Štěrba, Ondřej Slabý, Simone Schmid, Christin Siewert, Brendan Osberg, David Capper, Skarphéðinn Halldórsson, Einar Osland Vik-Mo, Pia S. Zeiner, Katharina J. Weber, Patrick N. Harter, Christian Thomas, Anne Albers, Markus Rechsteiner, Regina Reimann, Anton Appelt, Ulrich Schüller, Nabil Jabareen, Sebastian D. Mackowiak, Naveed Ishaque, Roland Eils, Soeren Lukassen, Philipp Euskirchen

    Vydáno 2025
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  19. 19
    CATCH: A Prospective Precision Oncology Trial in Metastatic Breast Cancer

    CATCH: A Prospective Precision Oncology Trial in Metastatic Breast Cancer Autor Mario Hlevnjak, Markus Schulze, Shaymaa Elgaafary, Carlo Fremd, Laura L. Michel, Katja Beck, Katrin Pfütze, Daniela Richter, Stephan Wolf, Peter Horak, Simon Kreutzfeldt, Constantin Pixberg, Barbara Hutter, Naveed Ishaque, Steffen Hirsch, Laura Gieldon, Albrecht Stenzinger, Christoph Springfeld, Katharina Smetanay, Julia Seitz, Athanasios Mavratzas, Benedikt Brors, Romy Kirsten, Florian Schuetz, Stefan Fröhling, Hans‐Peter Sinn, Dirk Jäger, Verena Thewes, Marc Zapatka, Peter Lichter, Andreas Schneeweiß

    Vydáno 2021
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  20. 20
    Environment‐induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children

    Environment‐induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children Autor Tobias Bauer, Saskia Trump, Naveed Ishaque, Loreen Thürmann, Lei Gu, Mario Bauer, Matthias Bieg, Zuguang Gu, Dieter Weichenhan, Jan‐Philipp Mallm, Stefan Röder, Gunda Herberth, Eiko Takada, Oliver Mücke, Marcus Winter, Kristin M. Junge, Konrad Grützmann, Ulrike Rolle‐Kampczyk, Qi Wang, Christian Lawerenz, Michael Borte, Tobias Polte, Matthias Schlesner, Michaela Schanné, Stefan Wiemann, Christina Geörg, Hendrik G. Stunnenberg, Christoph Plass, Karsten Rippe, Junichiro Mizuguchi, Carl Herrmann, Roland Eils, Irina Lehmann

    Vydáno 2016
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